BASAL GANGLIA - Expression summary
Protein expression
Caudatei
h
m
l
n
Glial cells: Not detected
Neuronal cells: Not detected
Protein profiling
Multiplex tissuei
RNA expressioni
Consensus:78.2 nTPM
HPA:78.2 nTPM
GTEx:58.1 nTPM
FANTOM5:125.4 Scaled Tags Per Million
Pig:28.4 nTPM
Mouse:54.2 nTPM
Allen mouse:2.0 Expression energy

CAUDATE - Antibody stainingi
Antibody HPA059297Antibody HPA069003Antibody CAB003434
Glial cells Not detectedNot detectedLow
Neuronal cells Not detectedNot detectedMedium






BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 78.2
Sample id Sample description nTPM
Caudate nucleus
nTPM: 59.9
2846 Female, age 79, unknown 64.1
1854 Male, age 80, left hemisphere 63.1
2290 Female, age 72, unknown 61.3
2288 Male, age 75, left hemisphere 61.0
2481 Female, age 94, left hemisphere 60.5
1857 Female, age 85, left hemisphere 58.3
2289 Male, age 61, right hemisphere 57.4
1781 Male, age 74, unknown 53.3
Claustrum
nTPM: 56.7
1956 Male, age 74, unknown 63.0
2292 Female, age 85, both hemispheres 63.0
2392 Female, age 94, both hemispheres 60.4
2196 Female, age 79, unknown 60.0
2645 Female, age 72, unknown 55.7
2568 Male, age 61, both hemispheres 53.6
2198 Male, age 80, both hemispheres 51.9
2491 Male, age 75, both hemispheres 51.8
2284 Female, age 91, both hemispheres 50.8
Globus pallidus, externus
nTPM: 72.7
1996 Male, age 80, right hemisphere 81.6
2395 Male, age 75, both hemispheres 71.8
2772 Female, age 79, unknown 71.2
2567 Female, age 72, unknown 70.0
2646 Male, age 61, right hemisphere 69.0
Globus pallidus, internus
nTPM: 78.2
2111 Female, age 85, right hemisphere 86.0
2778 Female, age 91, both hemispheres 82.3
2287 Male, age 75, right hemisphere 81.2
2037 Male, age 80, right hemisphere 79.1
1818 Male, age 74, unknown 78.9
2483 Female, age 94, right hemisphere 71.6
2566 Female, age 72, unknown 68.5
Nucleus accumbens
nTPM: 57.2
2391 Female, age 94, left hemisphere 65.3
2698 Female, age 72, unknown 64.6
2286 Male, age 75, left hemisphere 61.1
2732 Male, age 80, right hemisphere 57.3
1806 Female, age 85, left hemisphere 56.5
1783 Male, age 74, unknown 50.8
1856 Female, age 91, right hemisphere 50.8
2824 Male, age 61, right hemisphere 50.8
Nucleus basalis of Meynert
nTPM: 67.6
2821 Male, age 75, both hemispheres 72.5
2569 Male, age 61, both hemispheres 69.1
2393 Male, age 80, right hemisphere 66.4
2484 Female, age 94, left hemisphere 62.3
Nucleus of the diagonal band
nTPM: 49.6
1812 Female, age 91, both hemispheres 51.9
1979 Male, age 74, unknown 51.4
2195 Female, age 85, both hemispheres 49.0
2029 Male, age 61, right hemisphere 48.0
2775 Male, age 80, right hemisphere 47.9
Olfactory tubercle
nTPM: 53.7
2856 Male, age 75, right hemisphere 58.4
1846 Male, age 80, right hemisphere 56.8
2487 Female, age 94, left hemisphere 50.0
1998 Female, age 91, both hemispheres 49.7
Putamen
nTPM: 60.9
2489 Female, age 72, unknown 66.2
2482 Female, age 94, left hemisphere 64.4
1829 Male, age 74, unknown 61.7
2647 Male, age 75, left hemisphere 60.7
1838 Male, age 80, right hemisphere 59.7
2466 Female, age 79, unknown 57.2
1937 Female, age 91, right hemisphere 56.3
Septal nuclei
nTPM: 53.0
2199 Male, age 80, right hemisphere 62.5
2394 Male, age 61, left hemisphere 62.0
2031 Female, age 72, unknown 51.3
2059 Female, age 85, both hemispheres 51.2
2629 Female, age 94, right hemisphere 50.1
2009 Female, age 91, both hemispheres 49.5
1960 Male, age 74, unknown 44.8

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 58.1
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 49.2
Samples: 246

Max nTPM: 123.1
Min nTPM: 17.9
Std nTPM: 18.7
Median nTPM: 46.3
GTEX-1CAV2-0011-R5b-SM-9QEH4 40-49 years, female 123.1
GTEX-11UD1-0011-R5b-SM-5P9FP 40-49 years, female 120.2
GTEX-1HR9M-0011-R5a-SM-ARU72 60-69 years, male 98.7
GTEX-13OVJ-0011-R5a-SM-5P9H7 50-59 years, female 98.2
GTEX-1HCU6-0011-R5a-SM-ARU76 60-69 years, female 92.6
GTEX-1E1VI-0011-R5b-SM-9WG5V 50-59 years, male 91.0
GTEX-S7PM-0011-R5A-SM-3NM8G 60-69 years, male 90.0
GTEX-1EH9U-0011-R5a-SM-CJI2K 60-69 years, male 89.7
GTEX-17EVQ-0011-R5a-SM-7LT92 70-79 years, male 86.2
GTEX-17MF6-0011-R5a-SM-731BA 40-49 years, male 85.7
GTEX-13NZA-0011-R5b-SM-5KM4K 60-69 years, male 85.4
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Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 37.7
Samples: 246

Max nTPM: 132.6
Min nTPM: 12.4
Std nTPM: 20.9
Median nTPM: 31.5
GTEX-X4EP-0011-R6A-SM-3P629 60-69 years, female 132.6
GTEX-16XZZ-0011-R6a-SM-7IGNE 60-69 years, male 123.0
GTEX-145MI-0011-R6a-SM-5PNZA 60-69 years, female 119.2
GTEX-1E2YA-0011-R6b-SM-CE6R2 50-59 years, male 108.6
GTEX-1HFI6-0011-R6b-SM-CM2SR 40-49 years, male 108.5
GTEX-1CB4J-0011-R6b-SM-9WG7B 60-69 years, male 107.8
GTEX-11DYG-0011-R6a-SM-DO936 60-69 years, male 101.9
GTEX-X4XY-0011-R6B-SM-46MVB 60-69 years, male 98.5
GTEX-ZUA1-0011-R6b-SM-4YCDD 40-49 years, male 90.8
GTEX-ZF28-0011-R6a-SM-4WKHI 60-69 years, male 88.8
GTEX-1LC47-0011-R6b-SM-EZ6MI 60-69 years, male 85.3
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Brain - Putamen (basal ganglia)
Average nTPM: 58.1
Samples: 205

Max nTPM: 150.8
Min nTPM: 22.7
Std nTPM: 22.5
Median nTPM: 54.2
GTEX-1E2YA-0011-R7a-SM-CJI1Z 50-59 years, male 150.8
GTEX-12WSE-0011-R7a-SM-5PNWF 20-29 years, male 139.8
GTEX-1F75B-0011-R7a-SM-ARU84 50-59 years, male 123.6
GTEX-14LZ3-0011-R7a-SM-69LQN 60-69 years, female 117.3
GTEX-144GO-0011-R7b-SM-5S2TT 60-69 years, male 114.2
GTEX-ZXG5-0011-R7b-SM-57WCC 60-69 years, male 108.1
GTEX-NPJ7-0011-R7a-SM-EV79B 60-69 years, female 106.7
GTEX-1H4P4-0011-R7b-SM-ARU77 50-59 years, male 104.5
GTEX-11WQC-0011-R7b-SM-5BC7A 60-69 years, male 98.6
GTEX-X261-0011-R7A-SM-4E3JJ 50-59 years, male 97.9
GTEX-13JUV-0011-R7b-SM-5LZZG 40-49 years, female 96.1
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BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 125.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 52.7
FF:10164-103B2 76 years, female 52.7
Globus pallidus
Scaled Tags Per Million: 125.4
FF:10175-103C4 60 years, female 128.6
FF:10161-103A8 76 years, female 122.3
Nucleus accumbens
Scaled Tags Per Million: 64.8
FF:10037-101F1 23-56 years, mixed 64.8
Putamen
Scaled Tags Per Million: 51.6
FF:10176-103C5 60 years, female 51.6

BASAL GANGLIA - Pig RNA-seqi
Average nTPM 28.4
Pig sample Sample description nTPM
Caudate
nTPM: 19.5
Samples: 4

Max nTPM: 20.8
Min nTPM: 17.4
Sample A Female 20.8
Sample B Female 17.4
Sample C Male 19.9
Sample D Male 19.7
Putamen
nTPM: 23.6
Samples: 4

Max nTPM: 27.3
Min nTPM: 18.8
Sample A Female 27.0
Sample B Female 18.8
Sample C Male 27.3
Sample D Male 21.3
Septum
nTPM: 28.4
Samples: 4

Max nTPM: 42.5
Min nTPM: 20.4
Sample A Female 28.8
Sample B Female 20.4
Sample C Male 42.5
Sample D Male 21.8
Ventral pallidum
nTPM: 23.0
Samples: 4

Max nTPM: 28.0
Min nTPM: 19.8
Sample A Female 23.0
Sample B Female 21.1
Sample C Male 28.0
Sample D Male 19.8

BASAL GANGLIA - Mouse RNA-seqi
Average nTPM 54.2
Mouse sample Sample description nTPM
Caudate putamen
nTPM: 50.7
Samples: 4

Max nTPM: 56.4
Min nTPM: 47.6
Sample A Male 47.8
Sample B Male 47.6
Sample C Female 51.1
Sample D Female 56.4
Septum
nTPM: 54.2
Samples: 4

Max nTPM: 61.0
Min nTPM: 48.7
Sample A Male 48.7
Sample B Male 53.0
Sample C Female 54.1
Sample D Female 61.0
Ventral forebrain
nTPM: 48.6
Samples: 4

Max nTPM: 52.8
Min nTPM: 44.7
Sample A Male 44.7
Sample B Male 50.3
Sample C Female 52.8
Sample D Female 46.6

BASAL GANGLIA - Allen Mouse ISHi
Max Expression energy 2.0
Allen experiment id Experiment description Expression energy
Striatum
Expression energy: 1.6
76115730 Antisense, RP_060620_02_B09, Mouse strain C57BL/6J (56 days, male) 2.0
69735616 Antisense, RP_050503_03_B07, Mouse strain C57BL/6J (56 days, male) 1.3
Pallidum
Expression energy: 2.0
76115730 Antisense, RP_060620_02_B09, Mouse strain C57BL/6J (56 days, male) 2.4
69735616 Antisense, RP_050503_03_B07, Mouse strain C57BL/6J (56 days, male) 1.7

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The Human Protein Atlas

The Human Protein Atlas project is funded
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