MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:80.6 nTPM
HPA:80.6 nTPM
GTEx:81.2 nTPM
FANTOM5:135.8 Scaled Tags Per Million
Pig:45.7 nTPM
Mouse:56.4 nTPM
Allen mouse:1.8 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 80.6
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 68.1
2019 Male, age 18, unknown 79.0
1830 Male, age 51, unknown 78.6
1870 Female, age 42, unknown 77.7
1833 Male, age 53, unknown 74.2
2666 Male, age 74, left hemisphere 71.2
2411 Female, age 72, unknown 70.0
2828 Female, age 72, unknown 65.4
1827 Male, age 72, unknown 57.4
2219 Male, age 76, both hemispheres 57.4
2586 Male, age 75, left hemisphere 50.5
Dorsal raphe nucleus
nTPM: 66.1
2750 Male, age 76, both hemispheres 73.7
1828 Male, age 53, unknown 71.2
2047 Male, age 72, unknown 67.6
2016 Female, age 72, unknown 63.3
2298 Female, age 72, unknown 54.7
Inferior colliculus
nTPM: 64.3
1848 Female, age 42, unknown 65.8
1890 Male, age 53, unknown 65.1
2849 Male, age 72, unknown 63.6
2097 Female, age 72, unknown 62.8
Median raphe nucleus
nTPM: 69.7
2220 Male, age 76, midline 69.7
Pedunculopontine tegmental nucleus
nTPM: 74.9
2338 Male, age 61, both hemispheres 86.6
2334 Male, age 80, both hemispheres 75.4
1921 Female, age 85, both hemispheres 62.7
Periaquaductal grey, anterior
nTPM: 60.3
2502 Female, age 75, unknown 64.7
1947 Male, age 18, unknown 64.5
1795 Male, age 51, unknown 51.8
Periaquaductal grey, dorsal
nTPM: 60.9
2850 Male, age 76, both hemispheres 68.6
2464 Female, age 72, unknown 63.7
1831 Male, age 72, unknown 59.9
1840 Male, age 53, unknown 51.3
Periaquaductal grey, lateral
nTPM: 59.9
2140 Male, age 76, both hemispheres 60.7
2053 Male, age 18, unknown 59.8
2272 Male, age 74, both hemispheres 59.1
Pretectal area
nTPM: 59.2
1815 Male, age 53, unknown 65.6
1817 Female, age 42, unknown 62.4
1944 Female, age 72, unknown 62.2
2316 Male, age 76, right hemisphere 62.2
2224 Female, age 72, unknown 59.3
2007 Male, age 72, unknown 59.2
2825 Male, age 18, unknown 58.6
2667 Female, age 75, unknown 57.7
2273 Male, age 74, both hemispheres 56.2
1816 Male, age 51, unknown 54.1
2407 Male, age 75, both hemispheres 53.6
Red nucleus
nTPM: 80.6
1865 Male, age 51, unknown 92.7
1954 Female, age 42, unknown 92.2
1904 Male, age 53, unknown 89.8
1821 Female, age 72, unknown 88.2
2823 Male, age 76, right hemisphere 82.1
2227 Male, age 72, unknown 81.5
2769 Male, age 72, unknown 80.2
2503 Female, age 72, unknown 78.6
2785 Male, age 18, unknown 74.8
2725 Female, age 75, unknown 73.1
2588 Male, age 74, left hemisphere 71.1
2584 Male, age 75, left hemisphere 62.4
Substantia nigra
nTPM: 67.9
2409 Female, age 72, unknown 73.0
2699 Male, age 18, unknown 72.3
2665 Male, age 74, both hemispheres 71.9
2241 Male, age 72, unknown 71.5
2590 Female, age 75, unknown 68.9
1851 Male, age 51, unknown 68.0
1889 Female, age 72, unknown 66.3
1916 Female, age 42, unknown 65.3
1941 Male, age 53, unknown 62.9
2583 Male, age 75, right hemisphere 59.1
Superior colliculus
nTPM: 62.9
1913 Female, age 42, unknown 74.4
2587 Male, age 74, left hemisphere 70.5
1895 Male, age 76, right hemisphere 69.0
1995 Male, age 72, unknown 66.8
2087 Female, age 72, unknown 64.6
1839 Male, age 51, unknown 64.2
2668 Female, age 75, unknown 63.0
1796 Male, age 53, unknown 54.9
2664 Male, age 75, both hemispheres 50.9
2261 Male, age 18, unknown 50.3
Ventral tegmental area
nTPM: 68.4
2223 Female, age 72, unknown 76.4
2218 Male, age 76, both hemispheres 70.1
2410 Female, age 72, unknown 67.3
1915 Female, age 42, unknown 67.0
2021 Male, age 53, unknown 66.3
1942 Male, age 51, unknown 63.0

MIDBRAIN - GTEx RNA-seqi
Average nTPM 81.2
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 81.2
Samples: 139

Max nTPM: 168.0
Min nTPM: 32.4
Std nTPM: 26.1
Median nTPM: 75.3
GTEX-1H23P-0011-R2a-SM-CKZP3 60-69 years, male 168.0
GTEX-YFC4-0011-R2a-SM-4V6DZ 40-49 years, female 165.9
GTEX-1J1OQ-0011-R2b-SM-ARU88 40-49 years, female 155.2
GTEX-UTHO-0011-R2A-SM-3GIKC 60-69 years, male 149.1
GTEX-ZDXO-0011-R2b-SM-4WKFG 60-69 years, male 141.8
GTEX-OXRO-0011-R2A-SM-3NB1W 60-69 years, female 137.3
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 135.4
GTEX-1F75B-0011-R2a-SM-ARL8I 50-59 years, male 130.6
GTEX-1IL2U-0011-R2a-SM-ARU6V 60-69 years, male 125.9
GTEX-139TS-0011-R2b-SM-5J1MX 60-69 years, male 124.7
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 123.6
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 135.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 135.8
FF:10158-103A5 76 years, female 135.8

MIDBRAIN - Pig RNA-seqi
Average nTPM 45.7
Pig sample Sample description nTPM
Midbrain
nTPM: 32.5
Samples: 4

Max nTPM: 54.4
Min nTPM: 22.6
Sample A Female 54.4
Sample B Female 28.4
Sample C Male 24.6
Sample D Male 22.6
Periaqueductal gray
nTPM: 26.6
Samples: 3

Max nTPM: 30.8
Min nTPM: 24.2
Sample B Female 24.9
Sample C Male 30.8
Sample D Male 24.2
Substantia nigra
nTPM: 45.6
Samples: 4

Max nTPM: 57.9
Min nTPM: 29.2
Sample A Female 54.0
Sample B Female 57.9
Sample C Male 41.4
Sample D Male 29.2
Superior colliculi
nTPM: 40.2
Samples: 4

Max nTPM: 65.6
Min nTPM: 25.5
Sample A Female 41.9
Sample B Female 65.6
Sample C Male 25.5
Sample D Male 27.8

MIDBRAIN - Mouse RNA-seqi
Average nTPM 56.4
Mouse sample Sample description nTPM
Midbrain
nTPM: 56.5
Samples: 4

Max nTPM: 58.8
Min nTPM: 53.8
Sample A Male 54.5
Sample B Male 53.8
Sample C Female 58.8
Sample D Female 58.7

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 1.8
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 1.8
76115730 Antisense, RP_060620_02_B09, Mouse strain C57BL/6J (56 days, male) 2.2
69735616 Antisense, RP_050503_03_B07, Mouse strain C57BL/6J (56 days, male) 1.5

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The Human Protein Atlas

The Human Protein Atlas project is funded
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