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BRAIN AMYGDALA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA MIDBRAIN
OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
Amygdala
AMYGDALA - Expression summary
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:1151.9 nTPM
HPA:1151.9 nTPM
GTEx:630.9 nTPM
FANTOM5:685.5 Scaled Tags Per Million
Pig:187.0 nTPM
Mouse:2089.4 nTPM

AMYGDALA - HPA Brain RNA-seq
Max nTPM 1151.9
Sample id Sample description nTPM
Amygdala
nTPM: 1151.9
1987 Female, age 91, left hemisphere 1221.5
2814 Male, age 76, right hemisphere 1163.1
2514 Male, age 75, right hemisphere 1157.8
2695 Female, age 67, right hemisphere 1124.8
2517 Female, age 94, left hemisphere 1092.3
Basal amygdala
nTPM: 1055.6
2609 Male, age 75, right hemisphere 1098.9
2110 Male, age 80, left hemisphere 1096.3
1955 Male, age 76, both hemispheres 1084.1
2243 Female, age 91, right hemisphere 1068.8
2685 Female, age 94, left hemisphere 995.2
2827 Female, age 67, right hemisphere 990.3
Central amygdala
nTPM: 1084.0
2515 Male, age 75, right hemisphere 1157.2
1905 Male, age 76, both hemispheres 1095.0
2239 Male, age 80, left hemisphere 1066.5
2826 Female, age 94, left hemisphere 1066.3
2701 Female, age 91, right hemisphere 1035.0
Corticomedial amygdala
nTPM: 1070.2
2428 Male, age 75, right hemisphere 1125.0
2242 Female, age 91, right hemisphere 1087.8
2829 Male, age 80, left hemisphere 1086.2
2429 Female, age 94, left hemisphere 1073.3
2240 Male, age 76, both hemispheres 1065.4
2535 Female, age 67, right hemisphere 983.2
Lateral amygdala
nTPM: 1071.3
1883 Male, age 76, both hemispheres 1138.4
2534 Female, age 94, left hemisphere 1094.4
2516 Male, age 75, right hemisphere 1093.4
2256 Male, age 80, left hemisphere 1043.4
2255 Female, age 91, right hemisphere 1036.5
2830 Female, age 67, right hemisphere 1021.9
Stria terminalis, bed nucleus
nTPM: 1098.6
1974 Female, age 91, both hemispheres 1161.4
2201 Male, age 74, unknown 1075.0
2486 Female, age 94, both hemispheres 1059.3

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 630.9
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 630.9
Samples: 152

Max nTPM: 2976.6
Min nTPM: 330.2
Std nTPM: 300.8
Median nTPM: 548.3
GTEX-X4EP-0011-R4B-SM-3P627 60-69 years, female 2976.6
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 1977.1
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 1771.5
GTEX-15DDE-0011-R4b-SM-7KULI 50-59 years, female 1330.6
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 1238.5
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 1234.8
GTEX-145MI-0011-R4b-SM-5PNZH 60-69 years, female 1203.4
GTEX-1CB4J-0011-R4b-SM-9WG5P 60-69 years, male 1112.2
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 1063.3
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 1061.9
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 947.9
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 890.9
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 890.3
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 885.0
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 861.1
GTEX-NL3H-0011-R4a-SM-2I3GK 60-69 years, male 844.1
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 839.5
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 833.8
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 811.9
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 806.7
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 803.9
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 802.1
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 801.1
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 775.8
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 749.0
GTEX-1JJEA-0011-R4a-SM-EXUTC 60-69 years, male 746.8
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 729.8
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 728.3
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 727.4
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 727.0
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 724.1
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 716.1
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 713.6
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 712.3
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 711.9
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 710.2
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 706.7
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 706.2
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 685.1
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 684.6
GTEX-1H2FU-0011-R4a-SM-CL551 60-69 years, female 684.1
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 676.0
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 672.1
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 668.2
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 664.5
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 663.6
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 661.8
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 650.7
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 645.9
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 643.7
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 620.6
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 617.9
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 616.9
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 616.5
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 606.8
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 605.4
GTEX-T5JC-0011-R4A-SM-32PLT 20-29 years, male 597.0
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 596.9
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 589.9
GTEX-1JN6P-0011-R4a-SM-EZ6MS 60-69 years, male 585.6
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 583.8
GTEX-P44G-0011-R4A-SM-2I3FB 30-39 years, male 583.6
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 581.6
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 581.0
GTEX-T6MN-0011-R4A-SM-32QPG 50-59 years, male 579.0
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 574.1
GTEX-P44H-0011-R4A-SM-2XCEW 40-49 years, male 569.6
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 567.2
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 565.7
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 560.5
GTEX-R55E-0011-R4A-SM-2TC5H 20-29 years, male 558.6
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 555.8
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 554.0
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 550.6
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 550.3
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 548.7
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 547.9
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 547.9
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 540.2
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 538.5
GTEX-QMR6-0011-R4A-SM-32PKU 50-59 years, male 538.5
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 538.2
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 537.3
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 536.6
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 534.9
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 533.9
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 530.1
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 529.9
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 526.5
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 525.8
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 525.6
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 525.2
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 523.3
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 520.7
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 518.2
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 515.9
GTEX-N7MS-0011-R4a-SM-2HMKW 60-69 years, male 509.9
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 509.5
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 503.3
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 501.9
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 501.7
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 499.5
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 499.4
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 499.1
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 497.8
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 497.2
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 492.8
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 491.7
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 489.4
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 488.9
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 488.8
GTEX-183WM-0011-R4a-SM-7LG6S 70-79 years, female 488.1
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 483.3
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 483.0
GTEX-18464-0011-R4a-SM-7LG6T 50-59 years, male 479.1
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 479.0
GTEX-QDT8-0011-R4A-SM-32PKM 30-39 years, female 478.3
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 476.5
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 473.4
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 471.6
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 468.9
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 466.9
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 466.0
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 464.7
GTEX-UTHO-0011-R4A-SM-3GIJP 60-69 years, male 459.6
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 454.5
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 447.8
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 444.4
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 443.2
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 442.6
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 442.6
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 440.7
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 440.4
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 433.3
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 433.2
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 430.1
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 428.5
GTEX-Y8DK-0011-R4A-SM-EXUR1 60-69 years, male 422.2
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 418.7
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 418.1
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 414.9
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 409.7
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 409.3
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 407.2
GTEX-ZE9C-0011-R4a-SM-4WKH6 60-69 years, male 404.3
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 393.6
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 376.3
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 370.3
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 368.2
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 365.9
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 365.9
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 330.2
Show allShow less

AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 685.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 685.5
FF:10151-102I7 76 years, female 685.5

AMYGDALA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 187.0
Pig sample Sample description nTPM
Amygdala
nTPM: 187.0
Samples: 4

Max nTPM: 259.3
Min nTPM: 158.2
Sample A Female 259.3
Sample B Female 158.2
Sample C Male 163.4
Sample D Male 166.9

AMYGDALA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 2089.4
Mouse sample Sample description nTPM
Amygdala
nTPM: 2089.4
Samples: 4

Max nTPM: 2246.9
Min nTPM: 1900.1
Sample A Male 2246.9
Sample B Male 1900.1
Sample C Female 2086.9
Sample D Female 2123.6

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