MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:1215.6 nTPM
HPA:1215.6 nTPM
GTEx:734.6 nTPM
FANTOM5:857.0 Scaled Tags Per Million
Pig:367.3 nTPM
Mouse:2967.0 nTPM

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 1215.6
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 1126.9
2019 Male, age 18, unknown 1217.0
2411 Female, age 72, unknown 1168.4
1870 Female, age 42, unknown 1167.7
1827 Male, age 72, unknown 1143.4
2828 Female, age 72, unknown 1132.1
1833 Male, age 53, unknown 1116.0
2219 Male, age 76, both hemispheres 1102.5
1830 Male, age 51, unknown 1100.3
2586 Male, age 75, left hemisphere 1077.0
2666 Male, age 74, left hemisphere 1044.4
Dorsal raphe nucleus
nTPM: 1170.5
2298 Female, age 72, unknown 1252.3
2016 Female, age 72, unknown 1191.5
1828 Male, age 53, unknown 1177.6
2047 Male, age 72, unknown 1152.0
2750 Male, age 76, both hemispheres 1079.3
Inferior colliculus
nTPM: 1142.4
2097 Female, age 72, unknown 1202.2
1848 Female, age 42, unknown 1153.2
1890 Male, age 53, unknown 1129.8
2849 Male, age 72, unknown 1084.4
Median raphe nucleus
nTPM: 1152.8
2220 Male, age 76, midline 1152.8
Pedunculopontine tegmental nucleus
nTPM: 1215.6
2338 Male, age 61, both hemispheres 1291.1
2334 Male, age 80, both hemispheres 1191.7
1921 Female, age 85, both hemispheres 1164.1
Periaquaductal grey, anterior
nTPM: 1143.9
1795 Male, age 51, unknown 1169.9
1947 Male, age 18, unknown 1146.1
2502 Female, age 75, unknown 1115.6
Periaquaductal grey, dorsal
nTPM: 1147.4
2850 Male, age 76, both hemispheres 1221.1
1840 Male, age 53, unknown 1164.6
1831 Male, age 72, unknown 1118.7
2464 Female, age 72, unknown 1085.0
Periaquaductal grey, lateral
nTPM: 1208.6
2272 Male, age 74, both hemispheres 1263.1
2140 Male, age 76, both hemispheres 1231.7
2053 Male, age 18, unknown 1130.9
Pretectal area
nTPM: 1181.8
2273 Male, age 74, both hemispheres 1283.9
1944 Female, age 72, unknown 1232.2
1817 Female, age 42, unknown 1229.5
2007 Male, age 72, unknown 1213.3
2224 Female, age 72, unknown 1189.1
1816 Male, age 51, unknown 1183.8
2667 Female, age 75, unknown 1165.3
2407 Male, age 75, both hemispheres 1158.7
1815 Male, age 53, unknown 1152.1
2825 Male, age 18, unknown 1099.2
2316 Male, age 76, right hemisphere 1092.9
Red nucleus
nTPM: 1148.2
1821 Female, age 72, unknown 1214.2
2785 Male, age 18, unknown 1212.7
2503 Female, age 72, unknown 1181.6
1954 Female, age 42, unknown 1173.0
1865 Male, age 51, unknown 1168.3
2769 Male, age 72, unknown 1163.7
2227 Male, age 72, unknown 1157.7
1904 Male, age 53, unknown 1151.3
2725 Female, age 75, unknown 1115.9
2823 Male, age 76, right hemisphere 1112.1
2588 Male, age 74, left hemisphere 1072.6
2584 Male, age 75, left hemisphere 1055.2
Substantia nigra
nTPM: 1165.9
1916 Female, age 42, unknown 1265.4
2590 Female, age 75, unknown 1203.2
1889 Female, age 72, unknown 1198.9
2409 Female, age 72, unknown 1187.6
1851 Male, age 51, unknown 1184.2
2241 Male, age 72, unknown 1169.9
1941 Male, age 53, unknown 1152.9
2699 Male, age 18, unknown 1129.5
2583 Male, age 75, right hemisphere 1099.4
2665 Male, age 74, both hemispheres 1067.5
Superior colliculus
nTPM: 1135.9
1796 Male, age 53, unknown 1183.5
2587 Male, age 74, left hemisphere 1178.9
2668 Female, age 75, unknown 1167.2
2261 Male, age 18, unknown 1163.3
2087 Female, age 72, unknown 1161.5
1995 Male, age 72, unknown 1144.5
1913 Female, age 42, unknown 1132.7
1839 Male, age 51, unknown 1102.7
2664 Male, age 75, both hemispheres 1072.7
1895 Male, age 76, right hemisphere 1051.5
Ventral tegmental area
nTPM: 1152.5
2410 Female, age 72, unknown 1215.2
1915 Female, age 42, unknown 1195.8
2223 Female, age 72, unknown 1137.0
1942 Male, age 51, unknown 1134.8
2021 Male, age 53, unknown 1118.1
2218 Male, age 76, both hemispheres 1114.2

MIDBRAIN - GTEx RNA-seqi
Average nTPM 734.6
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 734.6
Samples: 139

Max nTPM: 2187.8
Min nTPM: 402.9
Std nTPM: 270.6
Median nTPM: 676.4
GTEX-OXRO-0011-R2A-SM-3NB1W 60-69 years, female 2187.8
GTEX-13NYS-0011-R2b-SM-5MR4G 60-69 years, male 2016.4
GTEX-13PDP-0011-R2b-SM-5O9DH 60-69 years, male 1672.1
GTEX-1HSMO-0011-R2a-SM-CL553 60-69 years, male 1613.1
GTEX-WHSE-0011-R2A-SM-3P5ZL 20-29 years, male 1516.3
GTEX-14C5O-0011-R2a-SM-5ZZV2 60-69 years, male 1315.3
GTEX-1HB9E-0011-R2b-SM-A96RW 50-59 years, male 1274.7
GTEX-13OVJ-0011-R2b-SM-5L3GP 50-59 years, female 1264.6
GTEX-11GSP-0011-R2b-SM-9QEGE 60-69 years, female 1129.3
GTEX-1B8SG-0011-R2b-SM-79OOT 50-59 years, male 1106.2
GTEX-12WSH-0011-R2a-SM-5GU68 50-59 years, male 1093.1
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 857.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 857.0
FF:10158-103A5 76 years, female 857.0

MIDBRAIN - Pig RNA-seqi
Average nTPM 367.3
Pig sample Sample description nTPM
Midbrain
nTPM: 355.5
Samples: 4

Max nTPM: 511.7
Min nTPM: 275.0
Sample A Female 511.7
Sample B Female 278.2
Sample C Male 357.0
Sample D Male 275.0
Periaqueductal gray
nTPM: 268.5
Samples: 3

Max nTPM: 310.3
Min nTPM: 226.7
Sample B Female 268.6
Sample C Male 310.3
Sample D Male 226.7
Substantia nigra
nTPM: 325.1
Samples: 4

Max nTPM: 367.1
Min nTPM: 273.3
Sample A Female 367.1
Sample B Female 273.3
Sample C Male 352.2
Sample D Male 307.9
Superior colliculi
nTPM: 367.3
Samples: 4

Max nTPM: 409.0
Min nTPM: 314.0
Sample A Female 378.8
Sample B Female 367.5
Sample C Male 409.0
Sample D Male 314.0

MIDBRAIN - Mouse RNA-seqi
Average nTPM 2967.0
Mouse sample Sample description nTPM
Midbrain
nTPM: 2967.1
Samples: 4

Max nTPM: 3146.1
Min nTPM: 2790.6
Sample A Male 2790.6
Sample B Male 2818.8
Sample C Female 3146.1
Sample D Female 3112.7

Contact

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.