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BRAIN SPINAL CORD Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA MIDBRAIN
OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
SPINAL CORD - Expression summary
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:1259.5 nTPM
HPA:1259.5 nTPM
GTEx:904.2 nTPM
FANTOM5:1146.1 Scaled Tags Per Million
Pig:476.4 nTPM

SPINAL CORD - HPA Brain RNA-seq
Max nTPM 1259.5
Sample id Sample description nTPM
Cervical spinal cord, central gray
nTPM: 1244.7
1981 Female, age 72, midline 1385.6
2194 Female, age 79, both hemispheres 1240.1
2048 Male, age 55, midline 1235.3
2816 Male, age 47, midline 1195.1
2565 Male, age 75, midline 1167.5
Cervical spinal cord, dorsal horn
nTPM: 1259.5
2296 Male, age 66, both hemispheres 1419.4
2173 Female, age 72, unknown 1387.8
2069 Male, age 47, both hemispheres 1342.3
1877 Male, age 55, unknown 1172.6
2721 Male, age 90, both hemispheres 1124.0
2297 Male, age 75, both hemispheres 1110.8
Cervical spinal cord, ventral horn
nTPM: 1234.0
2098 Female, age 72, unknown 1545.5
2068 Male, age 55, unknown 1229.9
2809 Male, age 90, both hemispheres 1216.6
2295 Male, age 66, both hemispheres 1185.7
2480 Male, age 75, both hemispheres 1119.2
2820 Female, age 79, both hemispheres 1106.8

SPINAL CORD - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 904.2
GTEx sample id Sample description nTPM
Brain - Spinal cord (cervical c-1)
Average nTPM: 904.2
Samples: 159

Max nTPM: 2620.3
Min nTPM: 466.0
Std nTPM: 364.1
Median nTPM: 800.1
GTEX-OXRO-0011-R9A-SM-3NB1X 60-69 years, female 2620.3
GTEX-1HSMO-0011-R9b-SM-CM2T2 60-69 years, male 2402.3
GTEX-T5JC-0011-R9A-SM-32PLV 20-29 years, male 2054.4
GTEX-13CIG-0011-R9a-SM-5K7VU 50-59 years, male 2017.1
GTEX-ZE9C-0011-R9a-SM-4WWCY 60-69 years, male 1746.0
GTEX-13NYS-0011-R9b-SM-5MR44 60-69 years, male 1705.0
GTEX-1H1DF-0011-R9b-SM-CM2RN 40-49 years, female 1641.6
GTEX-13OW5-0011-R9b-SM-5O9CL 60-69 years, male 1629.2
GTEX-1LB8K-0011-R9a-SM-EZ6MP 50-59 years, male 1571.5
GTEX-TSE9-0011-R9A-SM-3DB7Q 60-69 years, female 1533.9
GTEX-1R46S-0011-R9a-SM-EZ6N7 60-69 years, female 1506.4
GTEX-139T4-0011-R9b-SM-5HL6S 50-59 years, female 1498.6
GTEX-15DCD-0011-R9b-SM-7KUED 70-79 years, female 1465.7
GTEX-ZF28-0011-R9a-SM-4WWDY 60-69 years, male 1450.0
GTEX-13NZA-0011-R9b-SM-5MR5I 60-69 years, male 1440.1
GTEX-15G19-0011-R9b-SM-7KUEE 60-69 years, male 1422.3
GTEX-13CZV-0011-R9a-SM-5LZXT 60-69 years, male 1410.6
GTEX-15CHQ-0011-R9a-SM-6LLHX 60-69 years, male 1390.3
GTEX-1I19N-0011-R9a-SM-CMKHN 70-79 years, male 1357.3
GTEX-12WSH-0011-R9b-SM-5LZUG 50-59 years, male 1350.6
GTEX-13O1R-0011-R9b-SM-5KM33 60-69 years, male 1346.7
GTEX-XMD1-0011-R9A-SM-4AT49 60-69 years, male 1277.8
GTEX-14PJO-0011-R9b-SM-62LE9 60-69 years, male 1275.3
GTEX-1JJ6O-0011-R9a-SM-EYYXP 60-69 years, male 1263.1
GTEX-15DDE-0011-R9b-SM-6M46U 50-59 years, female 1246.0
GTEX-11EMC-0011-R9b-SM-DO921 60-69 years, female 1231.2
GTEX-18464-0011-R9a-SM-731BK 50-59 years, male 1221.9
GTEX-11UD2-0011-R9b-SM-DO926 50-59 years, male 1172.4
GTEX-1HBPM-0011-R9b-SM-ARL7C 60-69 years, female 1150.2
GTEX-RU72-0011-R9A-SM-2TF67 50-59 years, female 1148.0
GTEX-1H2FU-0011-R9b-SM-CE6S4 60-69 years, female 1140.9
GTEX-13PVQ-0011-R9b-SM-5LU3B 50-59 years, male 1117.3
GTEX-16XZZ-0011-R9b-SM-7DHKX 60-69 years, male 1114.5
GTEX-1CB4H-0011-R9a-SM-CKZNL 60-69 years, female 1110.2
GTEX-1J8JJ-0011-R9a-SM-ACKVF 60-69 years, female 1101.8
GTEX-1F52S-0011-R9a-SM-9WG62 60-69 years, female 1095.0
GTEX-1BAJH-0011-R9b-SM-7EPIQ 70-79 years, male 1083.7
GTEX-13FLV-0011-R9b-SM-5L3DA 50-59 years, male 1072.2
GTEX-1GN1U-0011-R9b-SM-CMKFW 50-59 years, female 1034.7
GTEX-16NPV-0011-R9b-SM-79ONF 50-59 years, female 1028.8
GTEX-1EH9U-0011-R9b-SM-9WG5T 60-69 years, male 1012.6
GTEX-13N2G-0011-R9b-SM-5MR4E 60-69 years, male 1009.3
GTEX-1EKGG-0011-R9a-SM-CMKFV 60-69 years, male 1006.1
GTEX-131XW-0011-R9a-SM-5N9EO 50-59 years, female 1001.7
GTEX-13N1W-0011-R9b-SM-5MR4R 70-79 years, male 989.9
GTEX-1LSNL-0011-R9b-SM-EYYWK 50-59 years, male 986.6
GTEX-1MJK2-0011-R9b-SM-EZ6MZ 50-59 years, male 981.3
GTEX-NPJ8-0011-R9a-SM-2YUN5 40-49 years, male 977.9
GTEX-1HBPH-0011-R9a-SM-CMKH3 40-49 years, female 974.6
GTEX-T6MN-0011-R9A-SM-32QOZ 50-59 years, male 969.4
GTEX-1F88F-0011-R9b-SM-9WG7L 60-69 years, female 950.3
GTEX-14E6C-0011-R9a-SM-6EU33 40-49 years, male 937.8
GTEX-QDT8-0011-R9A-SM-CYPRD 30-39 years, female 930.9
GTEX-1C6VS-0011-R9b-SM-9WG5W 60-69 years, male 927.7
GTEX-1C6VQ-0011-R9a-SM-7SB85 50-59 years, male 923.3
GTEX-1A32A-0011-R9b-SM-7MGXD 50-59 years, female 918.7
GTEX-1JN1M-0011-R9a-SM-EZ6MR 60-69 years, female 917.7
GTEX-14PJM-0011-R9b-SM-6EU35 50-59 years, female 909.2
GTEX-13SLX-0011-R9b-SM-5SI6X 50-59 years, female 905.6
GTEX-147GR-0011-R9a-SM-5S2UY 60-69 years, male 905.1
GTEX-11GSP-0011-R9b-SM-5NQ77 60-69 years, female 897.5
GTEX-14JIY-0011-R9a-SM-6EU34 60-69 years, male 890.6
GTEX-QVUS-0011-R9A-SM-3GIJA 60-69 years, female 884.5
GTEX-1J1OQ-0011-R9b-SM-ARZMK 40-49 years, female 879.8
GTEX-15ER7-0011-R9b-SM-6PALF 20-29 years, female 874.4
GTEX-13PLJ-0011-R9b-SM-5O9DV 60-69 years, female 862.7
GTEX-11ONC-0011-R9b-SM-5NQ8J 60-69 years, male 857.0
GTEX-13FXS-0011-R9a-SM-5K7UI 50-59 years, male 851.0
GTEX-1EU9M-0011-R9a-SM-9WG61 60-69 years, male 847.2
GTEX-1H23P-0011-R9a-SM-CM2T1 60-69 years, male 838.5
GTEX-14ABY-0011-R9a-SM-5PNZK 50-59 years, male 830.2
GTEX-1EWIQ-0011-R9a-SM-ARL8L 70-79 years, female 829.6
GTEX-YFC4-0011-R9a-SM-4SOK4 40-49 years, female 828.8
GTEX-13FTY-0011-R9b-SM-5KM2U 40-49 years, female 821.2
GTEX-1GN2E-0011-R9b-SM-9WG7F 60-69 years, male 810.6
GTEX-15DYW-0011-R9b-SM-6PALB 60-69 years, female 808.8
GTEX-14BIL-0011-R9a-SM-5SI7A 50-59 years, male 805.9
GTEX-1HBPI-0011-R9b-SM-ARL76 50-59 years, male 804.9
GTEX-ZAB4-0011-R9a-SM-4SOKG 40-49 years, male 804.2
GTEX-1CAMQ-0011-R9a-SM-9WG5Z 40-49 years, male 800.1
GTEX-NPJ7-0011-R9a-SM-2TC5R 60-69 years, female 789.6
GTEX-13VXU-0011-R9b-SM-5SI73 50-59 years, male 788.0
GTEX-1IDJH-0011-R9a-SM-ADEIN 70-79 years, male 781.8
GTEX-13OVJ-0011-R9b-SM-5L3GD 50-59 years, female 778.9
GTEX-1I1HK-0011-R9a-SM-CMKHK 60-69 years, male 769.4
GTEX-1GTWX-0011-R9a-SM-ADEH4 60-69 years, male 768.2
GTEX-145LU-0011-R9b-SM-5SI66 50-59 years, male 767.0
GTEX-1GF9V-0011-R9a-SM-CL53K 60-69 years, male 765.2
GTEX-1I1GS-0011-R9b-SM-CMKHF 60-69 years, male 757.1
GTEX-1H1ZS-0011-R9a-SM-CM2SO 70-79 years, male 751.2
GTEX-1LVA9-0011-R9a-SM-EYYWF 50-59 years, male 750.4
GTEX-1A8G7-0011-R9b-SM-7IGQH 60-69 years, male 748.1
GTEX-1IGQW-0011-R9b-SM-D4P25 60-69 years, male 744.3
GTEX-11ZTS-0011-R9b-SM-DO93Q 60-69 years, female 741.6
GTEX-13RTJ-0011-R9a-SM-5Q5AY 60-69 years, male 739.5
GTEX-131YS-0011-R9b-SM-5EQLY 60-69 years, female 733.4
GTEX-1KANB-0011-R9b-SM-EZ6MO 50-59 years, male 732.0
GTEX-1B933-0011-R9a-SM-79OOR 50-59 years, female 723.2
GTEX-14BIM-0011-R9a-SM-6LLJL 60-69 years, female 720.7
GTEX-11WQK-0011-R9b-SM-5BC6N 50-59 years, male 714.8
GTEX-1RQEC-0011-R9a-SM-EZ6N3 60-69 years, male 712.7
GTEX-NL4W-0011-R9a-SM-2I3G1 50-59 years, male 712.2
GTEX-1GN73-0011-R9a-SM-CKZO5 60-69 years, male 702.6
GTEX-15EO6-0011-R9a-SM-6PALG 50-59 years, male 702.5
GTEX-1HR98-0011-R9b-SM-ARL79 60-69 years, male 702.1
GTEX-1GZ2Q-0011-R9a-SM-9WG7A 40-49 years, male 689.0
GTEX-148VJ-0011-R9b-SM-5SI77 70-79 years, male 687.5
GTEX-1IKJJ-0011-R9a-SM-ARZLI 60-69 years, male 685.6
GTEX-RNOR-0011-R9A-SM-2TF52 50-59 years, female 684.9
GTEX-1I1CD-0011-R9a-SM-CMKHB 60-69 years, female 683.6
GTEX-13JUV-0011-R9a-SM-5LZX3 40-49 years, female 682.8
GTEX-12126-0011-R9b-SM-5BC6P 20-29 years, male 677.3
GTEX-13S7M-0011-R9a-SM-5O9DW 60-69 years, female 668.9
GTEX-1H3O1-0011-R9b-SM-CM2SQ 60-69 years, male 667.7
GTEX-PWO3-0011-R9A-SM-EVR2V 60-69 years, female 662.3
GTEX-1CAV2-0011-R9b-SM-9WG5M 40-49 years, female 660.2
GTEX-1192X-0011-R9b-SM-DO934 50-59 years, male 654.6
GTEX-139UW-0011-R9b-SM-5LZYT 60-69 years, male 654.1
GTEX-1ICLZ-0011-R9a-SM-ARL7E 60-69 years, male 651.8
GTEX-OHPN-0011-R9A-SM-5TDEJ 60-69 years, female 647.8
GTEX-14E7W-0011-R9a-SM-62LE6 70-79 years, male 647.5
GTEX-13QJC-0011-R9b-SM-5PNX3 60-69 years, female 647.2
GTEX-Q2AG-0011-R9A-SM-2HMJ6 40-49 years, female 645.4
GTEX-11ZVC-0011-R9a-SM-57WC5 50-59 years, female 644.8
GTEX-17EVQ-0011-R9b-SM-79OJY 70-79 years, male 643.3
GTEX-1IY9M-0011-R9b-SM-D3L8J 60-69 years, male 641.8
GTEX-1GF9W-0011-R9b-SM-9WG7J 60-69 years, male 640.4
GTEX-ZVZQ-0011-R9a-SM-51MRH 60-69 years, female 640.3
GTEX-16Z82-0011-R9a-SM-7DUFA 60-69 years, male 637.2
GTEX-14BMV-0011-R9b-SM-5ZZUA 50-59 years, male 635.4
GTEX-1JMLX-0011-R9a-SM-EYYXM 50-59 years, male 623.1
GTEX-13OVL-0011-R9a-SM-5P9GX 50-59 years, male 618.9
GTEX-1J8EW-0011-R9b-SM-D4P2F 60-69 years, female 614.5
GTEX-XLM4-0011-R9A-SM-4AT45 60-69 years, male 614.3
GTEX-14BIN-0011-R9a-SM-5SI76 50-59 years, female 604.2
GTEX-R55E-0011-R9A-SM-2TC6C 20-29 years, male 599.6
GTEX-1I1GV-0011-R9b-SM-ARZLE 60-69 years, male 597.9
GTEX-14PN4-0011-R9a-SM-6LLH9 50-59 years, male 588.9
GTEX-13SLW-0011-R9a-SM-5O9BT 70-79 years, male 587.0
GTEX-1GZHY-0011-R9a-SM-9WG5R 50-59 years, female 580.7
GTEX-13PL6-0011-R9b-SM-5O9CH 40-49 years, female 579.3
GTEX-1B8L1-0011-R9b-SM-9WG5U 60-69 years, male 579.3
GTEX-1HGF4-0011-R9a-SM-ADEH9 60-69 years, male 576.5
GTEX-1H3NZ-0011-R9a-SM-ADEH7 60-69 years, male 571.6
GTEX-1GZ4I-0011-R9b-SM-B2LY8 50-59 years, male 570.8
GTEX-13X6I-0011-R9b-SM-5PNZJ 60-69 years, male 555.2
GTEX-1F6I4-0011-R9a-SM-CMKFU 60-69 years, male 552.8
GTEX-12WSD-0011-R9a-SM-5GU6W 60-69 years, female 549.8
GTEX-12WSC-0011-R9a-SM-5GU4U 50-59 years, male 547.2
GTEX-1LVAO-0011-R9a-SM-EZ6MY 60-69 years, male 545.4
GTEX-13NYB-0011-R9b-SM-5MR5P 40-49 years, male 542.0
GTEX-YJ89-0011-R9a-SM-4SOK7 60-69 years, male 532.8
GTEX-11DZ1-0011-R9a-SM-DO933 50-59 years, male 531.5
GTEX-1H1DG-0011-R9b-SM-ACKVB 70-79 years, male 528.2
GTEX-QVJO-0011-R9A-SM-2S1QH 60-69 years, female 522.2
GTEX-WL46-0011-R9A-SM-3MJFP 50-59 years, male 510.6
GTEX-1HFI6-0011-R9b-SM-CMKH4 40-49 years, male 500.0
GTEX-1OJC4-0011-R9a-SM-EZ6N1 50-59 years, female 483.4
GTEX-11ZUS-0011-R9b-SM-5BC76 30-39 years, male 466.0
Show allShow less

SPINAL CORD - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 1146.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Spinal cord
Scaled Tags Per Million: 1146.1
FF:10159-103A6 76 years, female 1496.7
FF:10181-103D1 60 years, female 795.5

SPINAL CORD - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 476.4
Pig sample Sample description nTPM
Dorsal spinal cord
nTPM: 433.3
Samples: 4

Max nTPM: 609.6
Min nTPM: 334.8
Sample A Female 334.8
Sample B Female 392.3
Sample C Male 609.6
Sample D Male 396.3
Ventral spinal cord
nTPM: 476.4
Samples: 4

Max nTPM: 537.4
Min nTPM: 420.8
Sample A Female 420.8
Sample B Female 483.8
Sample C Male 537.4
Sample D Male 463.7

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