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BRAIN PONS Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA MIDBRAIN
OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
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VALIDATION
Brain proteome
Pons
PONS - Expression summary
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

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No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
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Consensus:1231.8 nTPM
HPA:1231.8 nTPM
FANTOM5:1202.1 Scaled Tags Per Million
Pig:358.8 nTPM

PONS - HPA Brain RNA-seq
Max nTPM 1231.8
Sample id Sample description nTPM
Anterior cochlear nucleus, ventral
nTPM: 1164.1
2188 Female, age 91, both hemispheres 1202.8
2090 Male, age 80, both hemispheres 1164.3
1984 Male, age 76, both hemispheres 1149.7
2301 Female, age 85, both hemispheres 1139.4
Dorsal cochlear nucleus
nTPM: 1119.8
2187 Female, age 91, both hemispheres 1175.1
2802 Male, age 74, right hemisphere 1132.9
2370 Male, age 61, both hemispheres 1114.3
2058 Male, age 76, both hemispheres 1106.4
2378 Male, age 80, both hemispheres 1070.0
Dorsal tegmental nucleus
nTPM: 1218.6
2358 Male, age 61, both hemispheres 1330.4
2083 Male, age 80, both hemispheres 1262.0
2326 Male, age 74, both hemispheres 1159.9
1936 Male, age 76, left hemisphere 1122.0
Dorsolateral tegmental area
nTPM: 1218.8
2337 Male, age 61, both hemispheres 1378.4
2654 Male, age 80, both hemispheres 1219.9
2751 Female, age 85, both hemispheres 1207.0
2360 Male, age 74, both hemispheres 1178.6
2141 Male, age 76, both hemispheres 1110.1
Kolliker-Fuse nucleus
nTPM: 1210.9
2315 Male, age 76, right hemisphere 1277.6
2163 Male, age 80, both hemispheres 1208.4
2793 Female, age 91, left hemisphere 1146.5
Lateral lemniscal nuclei
nTPM: 1140.8
2036 Male, age 80, both hemispheres 1220.0
2746 Female, age 85, left hemisphere 1195.2
2453 Male, age 74, right hemisphere 1136.1
2320 Female, age 91, left hemisphere 1081.3
2169 Male, age 76, both hemispheres 1071.5
Lateral parabrachial nucleus
nTPM: 1195.7
2139 Female, age 85, right hemisphere 1256.1
2792 Male, age 76, both hemispheres 1186.4
2790 Male, age 61, both hemispheres 1171.2
2013 Male, age 80, both hemispheres 1169.3
Lateral vestibular nucleus
nTPM: 1144.9
2311 Male, age 80, both hemispheres 1162.0
2184 Male, age 76, both hemispheres 1127.8
Locus coeruleus
nTPM: 1202.7
2123 Female, age 91, both hemispheres 1378.3
2014 Male, age 55, unknown 1258.3
2788 Male, age 74, unknown 1203.0
2317 Female, age 72, unknown 1187.1
2162 Male, age 80, both hemispheres 1141.8
1980 Male, age 76, both hemispheres 1125.7
2720 Male, age 74, both hemispheres 1124.4
Medial olivary nucleus
nTPM: 1231.8
1943 Male, age 61, both hemispheres 1328.6
2138 Female, age 91, both hemispheres 1289.9
1962 Male, age 76, both hemispheres 1176.4
2851 Male, age 80, both hemispheres 1132.5
Medial parabrachial nucleus
nTPM: 1196.5
2170 Female, age 91, both hemispheres 1250.0
2156 Male, age 61, both hemispheres 1241.4
2463 Female, age 85, right hemisphere 1228.4
2854 Male, age 80, both hemispheres 1163.1
2786 Male, age 76, both hemispheres 1099.7
Medial periolivary nuclei
nTPM: 1157.3
2791 Male, age 74, right hemisphere 1246.9
2171 Female, age 85, both hemispheres 1177.5
2081 Male, age 80, both hemispheres 1152.8
2063 Male, age 76, both hemispheres 1128.2
2458 Female, age 91, both hemispheres 1081.3
Motor facial nucleus
nTPM: 1139.3
2365 Male, age 74, right hemisphere 1244.5
2126 Male, age 61, both hemispheres 1178.0
2062 Male, age 76, both hemispheres 1132.4
2697 Female, age 85, both hemispheres 1116.4
2795 Female, age 91, both hemispheres 1111.8
2327 Male, age 80, both hemispheres 1052.8
Motor trigeminal nucleus
nTPM: 1140.6
2335 Male, age 61, both hemispheres 1232.0
2560 Male, age 74, both hemispheres 1166.8
2079 Male, age 80, both hemispheres 1158.3
2321 Female, age 91, both hemispheres 1081.4
2309 Male, age 76, both hemispheres 1064.3
Nuclei of the trapezoid body
nTPM: 1131.8
2735 Female, age 85, both hemispheres 1191.6
1983 Male, age 76, both hemispheres 1147.7
2159 Male, age 61, both hemispheres 1131.7
2166 Male, age 80, both hemispheres 1126.2
2368 Female, age 91, both hemispheres 1061.8
Paramedian reticular nucleus
nTPM: 1189.6
2057 Male, age 80, both hemispheres 1240.3
2050 Female, age 85, both hemispheres 1219.9
2313 Male, age 61, both hemispheres 1178.5
2052 Male, age 76, both hemispheres 1119.7
Pontine nuclei
nTPM: 1199.4
2787 Female, age 85, both hemispheres 1322.8
1863 Male, age 55, unknown 1296.1
2454 Male, age 74, left hemisphere 1243.0
2109 Female, age 72, unknown 1223.6
2319 Female, age 91, both hemispheres 1146.1
2727 Male, age 61, right hemisphere 1144.7
2115 Male, age 80, left hemisphere 1135.7
1968 Male, age 76, left hemisphere 1083.0
Pontine raphe nucleus
nTPM: 1141.6
2122 Female, age 85, midline 1208.3
2853 Male, age 76, midline 1074.9
Posteroventral cochlear nucleus
nTPM: 1175.7
2135 Female, age 91, both hemispheres 1243.2
2752 Female, age 85, both hemispheres 1202.3
2341 Male, age 80, both hemispheres 1187.0
2371 Male, age 61, both hemispheres 1130.3
2070 Male, age 76, both hemispheres 1115.6
Principal sensory trigeminal nucleus
nTPM: 1132.2
2008 Male, age 80, left hemisphere 1173.2
2158 Male, age 61, both hemispheres 1132.6
2324 Male, age 76, both hemispheres 1115.4
2367 Female, age 91, left hemisphere 1107.5
Reticular pontine nucleus, caudal
nTPM: 1131.6
2559 Male, age 74, both hemispheres 1171.7
2332 Male, age 80, right hemisphere 1133.6
2092 Male, age 76, both hemispheres 1126.3
2457 Female, age 91, both hemispheres 1094.8
Reticular pontine nucleus, oral
nTPM: 1185.0
2361 Male, age 74, both hemispheres 1251.0
1939 Male, age 80, both hemispheres 1244.9
2012 Female, age 85, both hemispheres 1199.7
2366 Female, age 91, both hemispheres 1128.5
2167 Male, age 76, both hemispheres 1100.9
Reticulotegmental nucleus
nTPM: 1122.3
2333 Male, age 80, both hemispheres 1145.1
2322 Female, age 91, both hemispheres 1140.7
2452 Male, age 74, both hemispheres 1124.2
2325 Male, age 76, both hemispheres 1079.1
Spinal trigeminal nucleus, oral
nTPM: 1124.3
2737 Female, age 85, both hemispheres 1165.9
2164 Male, age 80, both hemispheres 1142.1
1978 Male, age 76, both hemispheres 1064.8
Subcoeruleus area
nTPM: 1129.2
1958 Male, age 80, both hemispheres 1197.4
2369 Female, age 85, left hemisphere 1171.4
2323 Female, age 91, left hemisphere 1140.0
2451 Male, age 74, both hemispheres 1079.1
2089 Male, age 76, left hemisphere 1057.9
Superior olive
nTPM: 1153.7
2364 Male, age 74, right hemisphere 1250.3
1875 Female, age 85, both hemispheres 1217.2
2020 Male, age 76, both hemispheres 1114.2
2329 Male, age 80, right hemisphere 1096.6
2561 Female, age 91, both hemispheres 1090.1
Superior vestibular nucleus
nTPM: 1229.2
2383 Male, age 74, both hemispheres 1273.7
2015 Male, age 80, both hemispheres 1237.6
2061 Male, age 76, both hemispheres 1176.3
Ventral periolivary nuclei
nTPM: 1124.3
2130 Female, age 85, both hemispheres 1168.7
2165 Male, age 80, both hemispheres 1162.2
2023 Male, age 76, both hemispheres 1133.3
2794 Female, age 91, left hemisphere 1033.0
Ventrolateral tegmental area, A5 NE cell group
nTPM: 1198.1
2359 Male, age 61, both hemispheres 1555.1
2449 Male, age 74, both hemispheres 1184.8
2840 Female, age 85, both hemispheres 1175.9
2161 Male, age 80, both hemispheres 1117.5
1959 Male, age 76, both hemispheres 1093.6
2456 Female, age 91, both hemispheres 1061.6

PONS - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

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Max Scaled Tags Per Million 1202.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Locus coeruleus
Scaled Tags Per Million: 826.2
FF:10165-103B3 76 years, female 899.9
FF:10182-103D2 60 years, female 752.5
Pons
Scaled Tags Per Million: 1202.1
FF:10033-101E6 18-54 years, mixed 1202.1

PONS - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
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Average nTPM 358.8
Pig sample Sample description nTPM
Pons
nTPM: 358.8
Samples: 4

Max nTPM: 421.6
Min nTPM: 255.1
Sample A Female 373.2
Sample B Female 255.1
Sample C Male 421.6
Sample D Male 385.4

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The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.