We use cookies to enhance the usability of our website. If you continue, we'll assume that you are happy to receive all cookies. More information. Don't show this again.
QDPR
SECTIONS
  • TISSUE
  • BRAIN
  • SINGLE CELL TYPE
  • TISSUE CELL TYPE
  • PATHOLOGY
  • DISEASE
  • IMMUNE CELL
  • BLOOD PROTEIN
  • SUBCELLULAR
  • CELL LINE
  • STRUCTURE
  • METABOLIC
ABOUT
  • INTRODUCTION
  • HISTORY
  • ORGANIZATION
  • PUBLICATIONS
  • ANTIBODY SUBMISSION
  • ANTIBODY AVAILABILITY
  • ACKNOWLEDGMENTS
  • CONTACT
NEWS
  • NEWS ARTICLES
  • PRESS ROOM
LEARN
  • DICTIONARY
  • PROTEIN CLASSES
  • PROTEIN EVIDENCE
  • METHODS
  • EDUCATIONAL VIDEOS
DATA
  • DOWNLOADABLE DATA
  • PUBLICATION DATA
  • RELEASE HISTORY
  • SARS-COV-2
HELP
  • ANTIBODY VALIDATION
  • ASSAYS & ANNOTATION
  • DISCLAIMER
  • HELP & FAQ
  • PRIVACY STATEMENT
  • LICENCE & CITATION
Fields »
Search result

Field
Term
Gene name
Class
Subclass
Class
Keyword
Chromosome
External id
Tissue
Cell type
Expression
Patient ID
Tissue
Category
Cluster
Reliability
Brain region
Category
Brain region
Category
Brain region
Category
Reliability
Cell type
Category
Cluster
Tissue
Cell type
Enrichment
Cancer
Prognosis
Cancer
Category
Cell type
Category
Cell lineage
Category
Cluster
Annotation
Disease
Location
Searches
Location
Cell line
Type
Phase
Reliability
Cancer type
Category
Cluster
Pathway
Category
Score
Score
Score
Validation
Validation
Validation
Validation
Antibodies
Protein structure
In atlas
Column


  • SUMMARY

  • TISSUE

  • BRAIN

  • SINGLE CELL

  • TISSUE CELL

  • PATHOLOGY

  • DISEASE

  • IMMUNE

  • BLOOD

  • SUBCELL

  • CELL LINE

  • STRUCTURE

  • METABOLIC

  • QDPR
BRAIN AMYGDALA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA MIDBRAIN
OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
Amygdala
AMYGDALA - Expression summary
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:515.1 nTPM
HPA:515.1 nTPM
GTEx:420.9 nTPM
FANTOM5:316.3 Scaled Tags Per Million
Pig:103.3 nTPM
Mouse:152.8 nTPM
Allen mouse:8.6 Expression energy

AMYGDALA - HPA Brain RNA-seq
Max nTPM 515.1
Sample id Sample description nTPM
Amygdala
nTPM: 472.1
2695 Female, age 67, right hemisphere 564.7
2814 Male, age 76, right hemisphere 554.5
2517 Female, age 94, left hemisphere 434.2
2514 Male, age 75, right hemisphere 421.0
1987 Female, age 91, left hemisphere 385.9
Basal amygdala
nTPM: 460.4
2827 Female, age 67, right hemisphere 592.2
2110 Male, age 80, left hemisphere 498.2
2685 Female, age 94, left hemisphere 455.4
1955 Male, age 76, both hemispheres 430.8
2609 Male, age 75, right hemisphere 416.0
2243 Female, age 91, right hemisphere 369.5
Central amygdala
nTPM: 477.6
2826 Female, age 94, left hemisphere 602.7
1905 Male, age 76, both hemispheres 520.1
2239 Male, age 80, left hemisphere 446.5
2701 Female, age 91, right hemisphere 409.5
2515 Male, age 75, right hemisphere 409.3
Corticomedial amygdala
nTPM: 393.2
2535 Female, age 67, right hemisphere 455.5
2429 Female, age 94, left hemisphere 416.2
2829 Male, age 80, left hemisphere 389.1
2428 Male, age 75, right hemisphere 385.7
2240 Male, age 76, both hemispheres 384.2
2242 Female, age 91, right hemisphere 328.6
Lateral amygdala
nTPM: 515.1
2830 Female, age 67, right hemisphere 682.6
2516 Male, age 75, right hemisphere 527.9
1883 Male, age 76, both hemispheres 510.5
2534 Female, age 94, left hemisphere 499.2
2256 Male, age 80, left hemisphere 469.5
2255 Female, age 91, right hemisphere 401.1
Stria terminalis, bed nucleus
nTPM: 393.1
1974 Female, age 91, both hemispheres 408.3
2201 Male, age 74, unknown 390.6
2486 Female, age 94, both hemispheres 380.5

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 420.9
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 420.9
Samples: 152

Max nTPM: 1664.5
Min nTPM: 31.5
Std nTPM: 255.8
Median nTPM: 340.8
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 1664.5
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 1401.2
GTEX-145MI-0011-R4b-SM-5PNZH 60-69 years, female 1286.7
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 1167.8
GTEX-UTHO-0011-R4A-SM-3GIJP 60-69 years, male 1103.8
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 1090.1
GTEX-N7MS-0011-R4a-SM-2HMKW 60-69 years, male 1067.0
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 998.1
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 968.5
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 963.9
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 858.3
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 838.3
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 770.2
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 765.0
GTEX-ZE9C-0011-R4a-SM-4WKH6 60-69 years, male 757.3
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 710.0
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 637.2
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 636.9
GTEX-1JJEA-0011-R4a-SM-EXUTC 60-69 years, male 635.3
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 622.3
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 605.7
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 600.2
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 590.2
GTEX-183WM-0011-R4a-SM-7LG6S 70-79 years, female 589.5
GTEX-15DDE-0011-R4b-SM-7KULI 50-59 years, female 579.6
GTEX-1JN6P-0011-R4a-SM-EZ6MS 60-69 years, male 579.6
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 579.3
GTEX-18464-0011-R4a-SM-7LG6T 50-59 years, male 577.7
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 575.8
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 570.6
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 563.7
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 556.3
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 543.3
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 539.2
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 532.0
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 519.8
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 516.0
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 512.3
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 510.5
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 501.4
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 499.3
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 494.1
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 484.6
GTEX-Y8DK-0011-R4A-SM-EXUR1 60-69 years, male 481.2
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 477.9
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 471.2
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 457.6
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 448.5
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 444.4
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 433.9
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 432.9
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 431.9
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 422.9
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 414.1
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 413.6
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 413.3
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 403.8
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 399.1
GTEX-1H2FU-0011-R4a-SM-CL551 60-69 years, female 394.6
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 394.3
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 393.9
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 392.2
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 390.7
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 388.8
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 386.2
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 383.7
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 377.6
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 376.7
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 371.9
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 370.7
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 364.0
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 359.4
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 350.2
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 347.2
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 346.8
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 343.3
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 338.3
GTEX-T5JC-0011-R4A-SM-32PLT 20-29 years, male 331.4
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 331.2
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 326.7
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 325.7
GTEX-T6MN-0011-R4A-SM-32QPG 50-59 years, male 325.6
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 325.3
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 324.5
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 319.2
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 318.5
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 316.7
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 315.7
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 313.7
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 311.4
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 309.3
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 306.6
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 302.5
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 302.4
GTEX-QMR6-0011-R4A-SM-32PKU 50-59 years, male 298.6
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 295.0
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 294.4
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 291.1
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 289.5
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 288.7
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 287.0
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 286.9
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 281.5
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 279.6
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 277.3
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 274.5
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 271.4
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 271.2
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 270.3
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 269.5
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 266.2
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 262.4
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 262.1
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 261.6
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 260.1
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 253.0
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 252.6
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 251.6
GTEX-1CB4J-0011-R4b-SM-9WG5P 60-69 years, male 250.8
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 250.5
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 248.9
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 248.0
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 246.2
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 240.1
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 231.5
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 231.3
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 228.7
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 224.3
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 223.8
GTEX-QDT8-0011-R4A-SM-32PKM 30-39 years, female 222.4
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 221.0
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 219.2
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 216.3
GTEX-R55E-0011-R4A-SM-2TC5H 20-29 years, male 215.7
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 207.2
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 204.9
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 203.0
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 198.8
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 193.4
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 193.2
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 190.1
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 188.2
GTEX-P44G-0011-R4A-SM-2I3FB 30-39 years, male 184.7
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 176.4
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 173.8
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 173.4
GTEX-NL3H-0011-R4a-SM-2I3GK 60-69 years, male 161.6
GTEX-P44H-0011-R4A-SM-2XCEW 40-49 years, male 157.5
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 154.4
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 150.0
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 131.7
GTEX-X4EP-0011-R4B-SM-3P627 60-69 years, female 31.5
Show allShow less

AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 316.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 316.3
FF:10151-102I7 76 years, female 316.3

AMYGDALA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 103.3
Pig sample Sample description nTPM
Amygdala
nTPM: 103.3
Samples: 4

Max nTPM: 123.7
Min nTPM: 72.1
Sample A Female 104.9
Sample B Female 123.7
Sample C Male 112.6
Sample D Male 72.1

AMYGDALA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 152.8
Mouse sample Sample description nTPM
Amygdala
nTPM: 152.9
Samples: 4

Max nTPM: 190.4
Min nTPM: 130.0
Sample A Male 150.4
Sample B Male 140.6
Sample C Female 190.4
Sample D Female 130.0

AMYGDALA - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Read more
Max Expression energy 8.6
Allen experiment id Experiment description Expression energy
Cortical subplate
Expression energy: 8.6
75042261 Antisense, RP_060412_02_D03, Mouse strain C57BL/6J (56 days, male) 9.7
631703 Antisense, RP_040907_01_A03, Mouse strain C57BL/6J (56 days, male) 7.5

Contact

  • NEWS ARTICLES
  • PRESS ROOM
  • contact@proteinatlas.org

The Project

  • INTRODUCTION
  • ORGANIZATION
  • PUBLICATIONS

The Human Protein Atlas

  • DOWNLOADABLE DATA
  • LICENCE & CITATION
  • HELP & FAQ
The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.