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BRAIN THALAMUS Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA MIDBRAIN
OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
Thalamus
THALAMUS - Expression summary
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:602.6 nTPM
HPA:602.6 nTPM
FANTOM5:925.1 Scaled Tags Per Million
Pig:209.0 nTPM
Mouse:509.4 nTPM
Allen mouse:11.0 Expression energy

THALAMUS - HPA Brain RNA-seq
Max nTPM 602.6
Sample id Sample description nTPM
Anterior thalamic nucleus, ventral
nTPM: 565.8
2032 Female, age 42, unknown 595.7
2497 Male, age 66, unknown 574.2
2396 Male, age 61, right hemisphere 527.6
Centromedial thalamic nucleus
nTPM: 503.6
2401 Male, age 76, right hemisphere 548.8
2279 Female, age 85, left hemisphere 458.4
Habenula
nTPM: 411.7
2203 Male, age 61, left hemisphere 484.1
2252 Male, age 62, unknown 399.8
1957 Male, age 80, both hemispheres 387.0
2276 Male, age 66, unknown 376.0
Lateral geniculate body
nTPM: 599.6
2575 Female, age 94, right hemisphere 684.3
2841 Male, age 80, both hemispheres 670.0
2035 Female, age 72, unknown 614.0
1953 Male, age 62, unknown 601.6
2399 Male, age 61, left hemisphere 578.3
2106 Female, age 67, right hemisphere 565.4
2659 Male, age 66, unknown 563.3
2857 Male, age 74, right hemisphere 519.7
Lateral thalamic nuclei
nTPM: 577.3
2765 Female, age 67, both hemispheres 673.2
2573 Female, age 94, left hemisphere 643.7
2661 Female, age 72, unknown 615.9
2577 Male, age 74, both hemispheres 552.7
1903 Male, age 76, left hemisphere 401.1
Medial dorsal thalamic nucleus
nTPM: 481.1
2660 Female, age 72, unknown 623.1
2572 Female, age 94, right hemisphere 595.6
2576 Male, age 74, both hemispheres 578.5
1859 Male, age 76, both hemispheres 491.9
2402 Female, age 67, both hemispheres 485.3
1930 Female, age 42, unknown 469.5
1971 Male, age 61, right hemisphere 447.4
2498 Male, age 66, unknown 432.8
2492 Male, age 75, right hemisphere 431.4
1810 Male, age 48, unknown 429.4
2283 Male, age 80, right hemisphere 428.2
2039 Female, age 72, unknown 422.6
2026 Male, age 62, unknown 418.5
Medial geniculate body
nTPM: 488.6
2217 Female, age 72, unknown 580.5
2207 Male, age 80, right hemisphere 512.9
2657 Male, age 74, right hemisphere 502.4
2650 Female, age 94, left hemisphere 500.0
2571 Male, age 75, right hemisphere 479.1
2049 Male, age 76, both hemispheres 425.2
1811 Female, age 42, unknown 420.3
Nucleus reuniens
nTPM: 602.6
2210 Female, age 85, left hemisphere 766.7
2205 Male, age 80, left hemisphere 624.3
2212 Female, age 67, left hemisphere 416.8
Nucleus rhomboideus
nTPM: 518.5
2280 Female, age 85, left hemisphere 693.0
2213 Female, age 67, left hemisphere 466.2
2206 Male, age 80, both hemispheres 396.3
Posterior thalamic nucleus
nTPM: 526.5
2649 Female, age 94, both hemispheres 686.0
2655 Male, age 74, right hemisphere 516.8
2266 Male, age 76, right hemisphere 483.1
2495 Female, age 67, right hemisphere 420.2
Pulvinar
nTPM: 537.0
2398 Male, age 61, left hemisphere 607.8
1899 Female, age 42, unknown 593.4
1972 Male, age 62, unknown 577.0
1932 Male, age 80, right hemisphere 556.9
2499 Male, age 66, unknown 549.5
2724 Male, age 74, right hemisphere 536.1
1929 Male, age 48, unknown 515.4
2582 Female, age 72, unknown 486.1
2214 Male, age 76, right hemisphere 477.7
2496 Female, age 67, right hemisphere 470.0
Subthalamic nucleus
nTPM: 588.7
2056 Female, age 72, unknown 721.9
2658 Male, age 74, both hemispheres 701.1
2124 Male, age 62, unknown 647.1
2282 Male, age 61, both hemispheres 635.1
2216 Male, age 48, unknown 585.4
2779 Female, age 42, unknown 527.5
2275 Male, age 66, unknown 496.9
2406 Female, age 72, unknown 394.9
Ventral posterolateral thalamic nucleus
nTPM: 533.4
2740 Male, age 76, right hemisphere 576.7
2578 Male, age 74, both hemispheres 568.6
2581 Female, age 72, unknown 558.2
2397 Male, age 61, right hemisphere 531.4
2570 Male, age 75, right hemisphere 527.1
2197 Male, age 80, both hemispheres 438.2
Ventral posteromedial thalamic nucleus
nTPM: 520.1
2653 Male, age 74, both hemispheres 599.9
2281 Male, age 75, right hemisphere 561.7
2127 Male, age 76, right hemisphere 543.9
2202 Male, age 61, left hemisphere 459.6
2758 Male, age 80, both hemispheres 435.4
Ventral thalamic nuclei
nTPM: 567.8
2858 Female, age 72, unknown 652.3
1845 Male, age 48, unknown 642.1
2652 Male, age 74, left hemisphere 616.7
2580 Male, age 66, unknown 592.7
2291 Female, age 72, unknown 588.5
1860 Male, age 76, both hemispheres 541.5
2204 Male, age 80, both hemispheres 505.8
2285 Male, age 62, unknown 490.8
1912 Female, age 42, unknown 479.5
Ventromedial nucleus
nTPM: 348.3
1982 Female, age 72, unknown 360.9
1822 Female, age 42, unknown 335.7
Zona incerta
nTPM: 569.1
2822 Male, age 74, right hemisphere 665.5
2215 Male, age 66, unknown 640.5
2403 Male, age 62, unknown 567.2
2663 Female, age 72, unknown 545.2
2208 Male, age 80, right hemisphere 427.2

THALAMUS - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 925.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Thalamus
Scaled Tags Per Million: 925.1
FF:10154-103A1 76 years, female 925.1

THALAMUS - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 209.0
Pig sample Sample description nTPM
Thalamus
nTPM: 209.0
Samples: 4

Max nTPM: 305.3
Min nTPM: 143.3
Sample A Female 196.0
Sample B Female 143.3
Sample C Male 191.3
Sample D Male 305.3

THALAMUS - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 509.4
Mouse sample Sample description nTPM
Thalamus
nTPM: 509.4
Samples: 4

Max nTPM: 572.3
Min nTPM: 435.9
Sample A Male 572.3
Sample B Male 502.3
Sample C Female 527.2
Sample D Female 435.9

THALAMUS - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Read more
Max Expression energy 11.0
Allen experiment id Experiment description Expression energy
Thalamus
Expression energy: 11.0
75042261 Antisense, RP_060412_02_D03, Mouse strain C57BL/6J (56 days, male) 13.6
631703 Antisense, RP_040907_01_A03, Mouse strain C57BL/6J (56 days, male) 8.4

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