MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:53.6 nTPM
HPA:53.6 nTPM
GTEx:56.3 nTPM
FANTOM5:89.1 Scaled Tags Per Million
Pig:42.8 nTPM
Mouse:117.3 nTPM
Allen mouse:4.2 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 53.6
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 53.6
2586 Male, age 75, left hemisphere 72.2
2666 Male, age 74, left hemisphere 59.6
2019 Male, age 18, unknown 59.1
1827 Male, age 72, unknown 54.9
2828 Female, age 72, unknown 51.2
1870 Female, age 42, unknown 50.9
2411 Female, age 72, unknown 49.4
1830 Male, age 51, unknown 48.3
1833 Male, age 53, unknown 47.2
2219 Male, age 76, both hemispheres 43.3
Dorsal raphe nucleus
nTPM: 44.9
1828 Male, age 53, unknown 48.5
2047 Male, age 72, unknown 45.8
2016 Female, age 72, unknown 44.1
2750 Male, age 76, both hemispheres 43.3
2298 Female, age 72, unknown 42.9
Inferior colliculus
nTPM: 50.4
1890 Male, age 53, unknown 51.0
2097 Female, age 72, unknown 50.8
1848 Female, age 42, unknown 50.2
2849 Male, age 72, unknown 49.7
Median raphe nucleus
nTPM: 41.2
2220 Male, age 76, midline 41.2
Pedunculopontine tegmental nucleus
nTPM: 43.9
1921 Female, age 85, both hemispheres 46.6
2334 Male, age 80, both hemispheres 45.2
2338 Male, age 61, both hemispheres 39.8
Periaquaductal grey, anterior
nTPM: 49.9
2502 Female, age 75, unknown 51.2
1947 Male, age 18, unknown 49.9
1795 Male, age 51, unknown 48.7
Periaquaductal grey, dorsal
nTPM: 44.1
1840 Male, age 53, unknown 47.1
2464 Female, age 72, unknown 45.5
1831 Male, age 72, unknown 44.9
2850 Male, age 76, both hemispheres 38.8
Periaquaductal grey, lateral
nTPM: 40.7
2053 Male, age 18, unknown 45.8
2272 Male, age 74, both hemispheres 38.4
2140 Male, age 76, both hemispheres 37.9
Pretectal area
nTPM: 52.9
2007 Male, age 72, unknown 63.9
1816 Male, age 51, unknown 63.7
1817 Female, age 42, unknown 60.2
1944 Female, age 72, unknown 59.4
2407 Male, age 75, both hemispheres 56.8
1815 Male, age 53, unknown 55.2
2667 Female, age 75, unknown 48.8
2825 Male, age 18, unknown 48.1
2224 Female, age 72, unknown 42.5
2316 Male, age 76, right hemisphere 42.2
2273 Male, age 74, both hemispheres 40.6
Red nucleus
nTPM: 52.6
2584 Male, age 75, left hemisphere 61.5
2588 Male, age 74, left hemisphere 58.5
1821 Female, age 72, unknown 56.3
2785 Male, age 18, unknown 55.7
2503 Female, age 72, unknown 51.6
1865 Male, age 51, unknown 51.4
2725 Female, age 75, unknown 51.4
1954 Female, age 42, unknown 49.9
2227 Male, age 72, unknown 49.7
2769 Male, age 72, unknown 49.6
1904 Male, age 53, unknown 49.1
2823 Male, age 76, right hemisphere 47.0
Substantia nigra
nTPM: 52.9
2583 Male, age 75, right hemisphere 63.2
2665 Male, age 74, both hemispheres 58.8
1889 Female, age 72, unknown 56.6
1941 Male, age 53, unknown 55.1
2590 Female, age 75, unknown 53.7
1851 Male, age 51, unknown 51.5
2409 Female, age 72, unknown 49.7
1916 Female, age 42, unknown 49.2
2241 Male, age 72, unknown 47.8
2699 Male, age 18, unknown 43.4
Superior colliculus
nTPM: 52.8
2664 Male, age 75, both hemispheres 66.0
2087 Female, age 72, unknown 54.6
2668 Female, age 75, unknown 54.5
2587 Male, age 74, left hemisphere 51.8
2261 Male, age 18, unknown 51.2
1895 Male, age 76, right hemisphere 51.0
1796 Male, age 53, unknown 50.1
1839 Male, age 51, unknown 50.0
1995 Male, age 72, unknown 49.4
1913 Female, age 42, unknown 49.2
Ventral tegmental area
nTPM: 46.9
2410 Female, age 72, unknown 51.9
1915 Female, age 42, unknown 47.8
2223 Female, age 72, unknown 47.4
1942 Male, age 51, unknown 47.1
2021 Male, age 53, unknown 44.9
2218 Male, age 76, both hemispheres 42.3

MIDBRAIN - GTEx RNA-seqi
Average nTPM 56.3
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 56.3
Samples: 139

Max nTPM: 90.0
Min nTPM: 38.2
Std nTPM: 11.5
Median nTPM: 53.7
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 90.0
GTEX-ZDXO-0011-R2b-SM-4WKFG 60-69 years, male 89.1
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 86.0
GTEX-1HT8W-0011-R2a-SM-CMKH9 30-39 years, male 83.8
GTEX-17HG3-0011-R2a-SM-7MGVX 30-39 years, female 82.4
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 81.2
GTEX-YJ89-0011-R2b-SM-4RGLT 60-69 years, male 80.2
GTEX-1GN1U-0011-R2a-SM-CL53A 50-59 years, female 79.6
GTEX-12WSD-0011-R2a-SM-5LZWB 60-69 years, female 79.0
GTEX-139TS-0011-R2b-SM-5J1MX 60-69 years, male 78.9
GTEX-Q2AG-0011-R2A-SM-2HMIT 40-49 years, female 77.8
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 89.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 89.1
FF:10158-103A5 76 years, female 89.1

MIDBRAIN - Pig RNA-seqi
Average nTPM 42.8
Pig sample Sample description nTPM
Midbrain
nTPM: 42.8
Samples: 4

Max nTPM: 53.5
Min nTPM: 34.7
Sample A Female 42.1
Sample B Female 34.7
Sample C Male 53.5
Sample D Male 40.9
Periaqueductal gray
nTPM: 32.6
Samples: 3

Max nTPM: 34.8
Min nTPM: 29.8
Sample B Female 33.3
Sample C Male 34.8
Sample D Male 29.8
Substantia nigra
nTPM: 35.5
Samples: 4

Max nTPM: 41.1
Min nTPM: 30.9
Sample A Female 41.1
Sample B Female 30.9
Sample C Male 38.8
Sample D Male 31.2
Superior colliculi
nTPM: 42.0
Samples: 4

Max nTPM: 51.4
Min nTPM: 30.4
Sample A Female 43.0
Sample B Female 30.4
Sample C Male 51.4
Sample D Male 43.0

MIDBRAIN - Mouse RNA-seqi
Average nTPM 117.3
Mouse sample Sample description nTPM
Midbrain
nTPM: 117.3
Samples: 4

Max nTPM: 123.4
Min nTPM: 111.6
Sample A Male 111.6
Sample B Male 117.8
Sample C Female 123.4
Sample D Female 116.5

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 4.2
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 4.2
69529119 Antisense, RP_050421_03_E11, Mouse strain C57BL/6J (56 days, male) 4.2

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.