BASAL GANGLIA - Expression summary
Protein expression
Caudatei
h
m
l
n
Glial cells: Not detected
Neuronal cells: Low
Protein profiling
Multiplex tissuei
RNA expressioni
Consensus:67.7 nTPM
HPA:67.7 nTPM
GTEx:71.2 nTPM
FANTOM5:201.9 Scaled Tags Per Million
Pig:34.5 nTPM
Mouse:126.4 nTPM
Allen mouse:2.9 Expression energy

CAUDATE - Antibody stainingi
Antibody HPA043778Antibody HPA061659
Glial cells Not detectedNot detected
Neuronal cells LowLow





BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 67.7
Sample id Sample description nTPM
Caudate nucleus
nTPM: 61.1
2846 Female, age 79, unknown 71.7
1857 Female, age 85, left hemisphere 68.6
2290 Female, age 72, unknown 67.1
1854 Male, age 80, left hemisphere 64.9
1781 Male, age 74, unknown 58.5
2288 Male, age 75, left hemisphere 54.4
2481 Female, age 94, left hemisphere 52.5
2289 Male, age 61, right hemisphere 51.4
Claustrum
nTPM: 55.7
2568 Male, age 61, both hemispheres 60.2
2198 Male, age 80, both hemispheres 59.6
2392 Female, age 94, both hemispheres 58.3
2491 Male, age 75, both hemispheres 58.2
2284 Female, age 91, both hemispheres 56.7
1956 Male, age 74, unknown 54.6
2645 Female, age 72, unknown 54.1
2196 Female, age 79, unknown 51.9
2292 Female, age 85, both hemispheres 47.7
Globus pallidus, externus
nTPM: 53.5
2395 Male, age 75, both hemispheres 57.7
2646 Male, age 61, right hemisphere 57.3
2567 Female, age 72, unknown 54.2
2772 Female, age 79, unknown 50.7
1996 Male, age 80, right hemisphere 47.3
Globus pallidus, internus
nTPM: 51.6
2483 Female, age 94, right hemisphere 61.4
2287 Male, age 75, right hemisphere 60.3
2778 Female, age 91, both hemispheres 50.8
1818 Male, age 74, unknown 49.6
2566 Female, age 72, unknown 49.4
2037 Male, age 80, right hemisphere 45.1
2111 Female, age 85, right hemisphere 44.9
Nucleus accumbens
nTPM: 56.7
1856 Female, age 91, right hemisphere 63.8
1783 Male, age 74, unknown 63.1
1806 Female, age 85, left hemisphere 61.6
2824 Male, age 61, right hemisphere 59.3
2698 Female, age 72, unknown 56.3
2286 Male, age 75, left hemisphere 53.5
2391 Female, age 94, left hemisphere 52.5
2732 Male, age 80, right hemisphere 43.2
Nucleus basalis of Meynert
nTPM: 58.3
2393 Male, age 80, right hemisphere 65.8
2569 Male, age 61, both hemispheres 59.7
2484 Female, age 94, left hemisphere 56.2
2821 Male, age 75, both hemispheres 51.5
Nucleus of the diagonal band
nTPM: 54.0
1812 Female, age 91, both hemispheres 59.9
2775 Male, age 80, right hemisphere 59.2
2029 Male, age 61, right hemisphere 55.2
2195 Female, age 85, both hemispheres 51.8
1979 Male, age 74, unknown 44.2
Olfactory tubercle
nTPM: 53.4
1846 Male, age 80, right hemisphere 57.7
1998 Female, age 91, both hemispheres 56.6
2856 Male, age 75, right hemisphere 50.4
2487 Female, age 94, left hemisphere 49.1
Putamen
nTPM: 67.7
1829 Male, age 74, unknown 80.1
2466 Female, age 79, unknown 75.2
1838 Male, age 80, right hemisphere 73.4
2647 Male, age 75, left hemisphere 65.6
2489 Female, age 72, unknown 64.0
1937 Female, age 91, right hemisphere 62.3
2482 Female, age 94, left hemisphere 52.9
Septal nuclei
nTPM: 48.8
2031 Female, age 72, unknown 59.2
1960 Male, age 74, unknown 53.2
2629 Female, age 94, right hemisphere 50.3
2009 Female, age 91, both hemispheres 49.3
2394 Male, age 61, left hemisphere 45.7
2059 Female, age 85, both hemispheres 43.9
2199 Male, age 80, right hemisphere 40.1

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 71.2
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 66.7
Samples: 246

Max nTPM: 116.6
Min nTPM: 38.9
Std nTPM: 15.3
Median nTPM: 63.9
GTEX-16YQH-0011-R5b-SM-7938U 30-39 years, male 116.6
GTEX-1J1OQ-0011-R5a-SM-D3L8K 40-49 years, female 111.0
GTEX-1EMGI-0011-R5a-SM-CJI2E 60-69 years, male 108.7
GTEX-1AX9I-0011-R5b-SM-793DI 60-69 years, male 105.4
GTEX-15ER7-0011-R5b-SM-6M46T 20-29 years, female 105.0
GTEX-14PN4-0011-R5a-SM-686ZV 50-59 years, male 104.0
GTEX-11DYG-0011-R5a-SM-DO928 60-69 years, male 102.9
GTEX-145MH-0011-R5a-SM-5P9JT 50-59 years, male 102.6
GTEX-T5JC-0011-R5A-SM-32PLK 20-29 years, male 101.3
GTEX-1313W-0011-R5b-SM-5L3EP 50-59 years, female 99.1
GTEX-1F75A-0011-R5a-SM-ARZMJ 50-59 years, male 98.9
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Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 63.3
Samples: 246

Max nTPM: 115.8
Min nTPM: 32.8
Std nTPM: 15.1
Median nTPM: 60.2
GTEX-16YQH-0011-R6b-SM-7938T 30-39 years, male 115.8
GTEX-WHSE-0011-R6A-SM-3P5ZP 20-29 years, male 108.4
GTEX-Q2AG-0011-R6A-SM-2HML7 40-49 years, female 104.3
GTEX-13X6J-0011-R6a-SM-5PNUB 50-59 years, male 100.5
GTEX-1F7RK-0011-R6b-SM-ARZMG 20-29 years, female 98.4
GTEX-R55E-0011-R6A-SM-2TC5T 20-29 years, male 97.7
GTEX-XLM4-0011-R6A-SM-4AT4B 60-69 years, male 95.9
GTEX-11NV4-0011-R6a-SM-57WD5 60-69 years, male 94.0
GTEX-1I1GR-0011-R6a-SM-CMKHI 60-69 years, male 94.0
GTEX-QVJO-0011-R6A-SM-2S1QN 60-69 years, female 92.9
GTEX-11OF3-0011-R6b-SM-57WBG 60-69 years, male 91.8
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Brain - Putamen (basal ganglia)
Average nTPM: 71.2
Samples: 205

Max nTPM: 146.1
Min nTPM: 45.5
Std nTPM: 15.1
Median nTPM: 66.9
GTEX-14C5O-0011-R7b-SM-5YYAH 60-69 years, male 146.1
GTEX-16YQH-0011-R7a-SM-79ON1 30-39 years, male 124.6
GTEX-WHSE-0011-R7A-SM-3P5YZ 20-29 years, male 116.8
GTEX-RNOR-0011-R7A-SM-2TF4V 50-59 years, female 114.6
GTEX-WL46-0011-R7A-SM-3LK7X 50-59 years, male 102.2
GTEX-XLM4-0011-R7A-SM-4AT5L 60-69 years, male 99.9
GTEX-ZE7O-0011-R7a-SM-57WCU 50-59 years, female 99.9
GTEX-13O3Q-0011-R7a-SM-5KM38 50-59 years, male 99.6
GTEX-11PRG-0011-R7a-SM-DNZZT 50-59 years, male 98.9
GTEX-QVJO-0011-R7A-SM-2S1QO 60-69 years, female 97.5
GTEX-13G51-0011-R7b-SM-5LZXG 60-69 years, male 96.7
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BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 201.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 145.2
FF:10164-103B2 76 years, female 145.2
Globus pallidus
Scaled Tags Per Million: 112.8
FF:10175-103C4 60 years, female 122.3
FF:10161-103A8 76 years, female 103.3
Nucleus accumbens
Scaled Tags Per Million: 177.2
FF:10037-101F1 23-56 years, mixed 177.2
Putamen
Scaled Tags Per Million: 201.9
FF:10176-103C5 60 years, female 201.9

BASAL GANGLIA - Pig RNA-seqi
Average nTPM 34.5
Pig sample Sample description nTPM
Caudate
nTPM: 31.9
Samples: 4

Max nTPM: 36.7
Min nTPM: 28.3
Sample A Female 28.3
Sample B Female 32.5
Sample C Male 36.7
Sample D Male 30.0
Putamen
nTPM: 34.5
Samples: 4

Max nTPM: 42.3
Min nTPM: 29.3
Sample A Female 32.5
Sample B Female 29.3
Sample C Male 42.3
Sample D Male 33.8
Septum
nTPM: 33.4
Samples: 4

Max nTPM: 36.6
Min nTPM: 28.8
Sample A Female 33.9
Sample B Female 34.1
Sample C Male 36.6
Sample D Male 28.8
Ventral pallidum
nTPM: 34.0
Samples: 4

Max nTPM: 42.4
Min nTPM: 28.7
Sample A Female 28.7
Sample B Female 34.4
Sample C Male 42.4
Sample D Male 30.6

BASAL GANGLIA - Mouse RNA-seqi
Average nTPM 126.4
Mouse sample Sample description nTPM
Caudate putamen
nTPM: 126.5
Samples: 4

Max nTPM: 131.1
Min nTPM: 123.0
Sample A Male 123.0
Sample B Male 123.3
Sample C Female 131.1
Sample D Female 128.4
Septum
nTPM: 92.9
Samples: 4

Max nTPM: 100.3
Min nTPM: 87.5
Sample A Male 93.3
Sample B Male 90.5
Sample C Female 87.5
Sample D Female 100.3
Ventral forebrain
nTPM: 113.9
Samples: 4

Max nTPM: 121.4
Min nTPM: 107.2
Sample A Male 116.7
Sample B Male 110.1
Sample C Female 107.2
Sample D Female 121.4

BASAL GANGLIA - Allen Mouse ISHi
Max Expression energy 2.9
Allen experiment id Experiment description Expression energy
Striatum
Expression energy: 2.9
69529119 Antisense, RP_050421_03_E11, Mouse strain C57BL/6J (56 days, male) 2.9
Pallidum
Expression energy: 2.8
69529119 Antisense, RP_050421_03_E11, Mouse strain C57BL/6J (56 days, male) 2.8

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The Human Protein Atlas

The Human Protein Atlas project is funded
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