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BRAIN AMYGDALA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA MIDBRAIN
OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
Amygdala
AMYGDALA - Expression summary
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:55.5 nTPM
HPA:55.5 nTPM
GTEx:56.5 nTPM
FANTOM5:115.8 Scaled Tags Per Million
Pig:32.9 nTPM
Mouse:119.0 nTPM
Allen mouse:5.1 Expression energy

AMYGDALA - HPA Brain RNA-seq
Max nTPM 55.5
Sample id Sample description nTPM
Amygdala
nTPM: 53.4
2695 Female, age 67, right hemisphere 59.9
2814 Male, age 76, right hemisphere 58.6
2517 Female, age 94, left hemisphere 51.0
2514 Male, age 75, right hemisphere 50.5
1987 Female, age 91, left hemisphere 46.8
Basal amygdala
nTPM: 52.9
2827 Female, age 67, right hemisphere 57.4
2609 Male, age 75, right hemisphere 57.3
2685 Female, age 94, left hemisphere 55.1
2110 Male, age 80, left hemisphere 50.7
1955 Male, age 76, both hemispheres 49.7
2243 Female, age 91, right hemisphere 47.1
Central amygdala
nTPM: 55.1
2826 Female, age 94, left hemisphere 67.1
2515 Male, age 75, right hemisphere 58.0
1905 Male, age 76, both hemispheres 56.4
2239 Male, age 80, left hemisphere 48.2
2701 Female, age 91, right hemisphere 45.9
Corticomedial amygdala
nTPM: 49.8
2829 Male, age 80, left hemisphere 55.6
2428 Male, age 75, right hemisphere 55.3
2240 Male, age 76, both hemispheres 48.6
2429 Female, age 94, left hemisphere 47.8
2535 Female, age 67, right hemisphere 46.1
2242 Female, age 91, right hemisphere 45.5
Lateral amygdala
nTPM: 55.5
2830 Female, age 67, right hemisphere 63.2
2516 Male, age 75, right hemisphere 60.0
2534 Female, age 94, left hemisphere 59.7
1883 Male, age 76, both hemispheres 57.3
2256 Male, age 80, left hemisphere 47.8
2255 Female, age 91, right hemisphere 44.9
Stria terminalis, bed nucleus
nTPM: 49.4
1974 Female, age 91, both hemispheres 55.0
2486 Female, age 94, both hemispheres 48.9
2201 Male, age 74, unknown 44.4

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 56.5
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 56.5
Samples: 152

Max nTPM: 87.7
Min nTPM: 15.3
Std nTPM: 10.1
Median nTPM: 56.6
GTEX-R55E-0011-R4A-SM-2TC5H 20-29 years, male 87.7
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 84.0
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 79.6
GTEX-N7MS-0011-R4a-SM-2HMKW 60-69 years, male 78.1
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 76.9
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 76.0
GTEX-P44H-0011-R4A-SM-2XCEW 40-49 years, male 74.8
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 74.0
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 73.3
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 72.5
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 72.0
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 71.3
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 70.4
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 69.6
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 69.2
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 69.0
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 68.0
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 67.8
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 67.5
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 67.2
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 67.1
GTEX-Y8DK-0011-R4A-SM-EXUR1 60-69 years, male 66.9
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 66.8
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 66.5
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 66.3
GTEX-1JJEA-0011-R4a-SM-EXUTC 60-69 years, male 66.1
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 65.3
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 64.9
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 64.8
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 64.7
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 64.3
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 64.2
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 63.9
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 63.4
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 63.2
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 63.0
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 62.9
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 62.8
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 62.6
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 62.4
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 62.3
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 62.2
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 62.1
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 61.9
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 61.8
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 61.3
GTEX-ZE9C-0011-R4a-SM-4WKH6 60-69 years, male 61.3
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 61.2
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 60.9
GTEX-145MI-0011-R4b-SM-5PNZH 60-69 years, female 60.7
GTEX-QMR6-0011-R4A-SM-32PKU 50-59 years, male 60.7
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 60.5
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 60.2
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 60.2
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 60.0
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 60.0
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 59.8
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 59.8
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 59.8
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 59.4
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 59.0
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 58.9
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 58.5
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 58.3
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 58.0
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 57.9
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 57.8
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 57.6
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 57.6
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 57.4
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 57.3
GTEX-P44G-0011-R4A-SM-2I3FB 30-39 years, male 57.1
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 57.0
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 56.8
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 56.8
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 56.7
GTEX-QDT8-0011-R4A-SM-32PKM 30-39 years, female 56.4
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 56.0
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 55.8
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 55.1
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 54.6
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 54.5
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 54.4
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 54.4
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 53.9
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 53.9
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 53.8
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 53.7
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 53.3
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 53.1
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 52.8
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 52.4
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 52.4
GTEX-UTHO-0011-R4A-SM-3GIJP 60-69 years, male 52.2
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 51.8
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 51.8
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 51.7
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 51.6
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 51.4
GTEX-T5JC-0011-R4A-SM-32PLT 20-29 years, male 51.4
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 51.3
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 51.2
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 51.1
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 50.9
GTEX-1H2FU-0011-R4a-SM-CL551 60-69 years, female 50.8
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 50.7
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 50.6
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 50.4
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 50.2
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 49.8
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 49.8
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 49.6
GTEX-NL3H-0011-R4a-SM-2I3GK 60-69 years, male 49.5
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 49.4
GTEX-T6MN-0011-R4A-SM-32QPG 50-59 years, male 49.3
GTEX-18464-0011-R4a-SM-7LG6T 50-59 years, male 49.2
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 49.2
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 48.8
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 48.6
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 48.4
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 48.1
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 48.1
GTEX-1JN6P-0011-R4a-SM-EZ6MS 60-69 years, male 48.0
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 47.9
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 47.5
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 47.5
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 47.5
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 47.4
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 47.3
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 47.1
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 47.1
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 47.0
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 46.9
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 46.7
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 45.6
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 45.5
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 45.0
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 44.5
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 44.3
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 44.0
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 43.9
GTEX-15DDE-0011-R4b-SM-7KULI 50-59 years, female 43.8
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 43.6
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 43.0
GTEX-183WM-0011-R4a-SM-7LG6S 70-79 years, female 42.2
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 40.9
GTEX-1CB4J-0011-R4b-SM-9WG5P 60-69 years, male 40.2
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 39.9
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 39.5
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 39.0
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 38.4
GTEX-X4EP-0011-R4B-SM-3P627 60-69 years, female 15.3
Show allShow less

AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 115.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 115.8
FF:10151-102I7 76 years, female 115.8

AMYGDALA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 32.9
Pig sample Sample description nTPM
Amygdala
nTPM: 32.9
Samples: 4

Max nTPM: 38.7
Min nTPM: 29.5
Sample A Female 38.7
Sample B Female 31.1
Sample C Male 29.5
Sample D Male 32.1

AMYGDALA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 119.0
Mouse sample Sample description nTPM
Amygdala
nTPM: 119.0
Samples: 4

Max nTPM: 127.9
Min nTPM: 114.4
Sample A Male 114.4
Sample B Male 116.4
Sample C Female 127.9
Sample D Female 117.4

AMYGDALA - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Read more
Max Expression energy 5.1
Allen experiment id Experiment description Expression energy
Cortical subplate
Expression energy: 5.1
69529119 Antisense, RP_050421_03_E11, Mouse strain C57BL/6J (56 days, male) 5.1

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