BASAL GANGLIA - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:46.5 nTPM
HPA:46.5 nTPM
GTEx:43.3 nTPM
FANTOM5:88.8 Scaled Tags Per Million
Pig:32.3 nTPM
Mouse:14.2 nTPM
Allen mouse:9.7 Expression energy

BASAL GANGLIA - Annotated protein expression
Pending normal tissue analysis

BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 46.5
Sample id Sample description nTPM
Caudate nucleus
nTPM: 42.1
2846 Female, age 79, unknown 51.2
2288 Male, age 75, left hemisphere 50.8
1854 Male, age 80, left hemisphere 45.4
1857 Female, age 85, left hemisphere 43.6
2289 Male, age 61, right hemisphere 41.5
1781 Male, age 74, unknown 38.2
2290 Female, age 72, unknown 37.4
2481 Female, age 94, left hemisphere 28.3
Claustrum
nTPM: 36.8
1956 Male, age 74, unknown 43.4
2392 Female, age 94, both hemispheres 42.9
2568 Male, age 61, both hemispheres 39.4
2196 Female, age 79, unknown 36.8
2292 Female, age 85, both hemispheres 36.1
2491 Male, age 75, both hemispheres 35.8
2284 Female, age 91, both hemispheres 34.0
2198 Male, age 80, both hemispheres 33.5
2645 Female, age 72, unknown 29.4
Globus pallidus, externus
nTPM: 39.6
2567 Female, age 72, unknown 47.3
2646 Male, age 61, right hemisphere 39.4
1996 Male, age 80, right hemisphere 39.1
2395 Male, age 75, both hemispheres 38.8
2772 Female, age 79, unknown 33.2
Globus pallidus, internus
nTPM: 45.5
2778 Female, age 91, both hemispheres 53.6
2111 Female, age 85, right hemisphere 51.3
2287 Male, age 75, right hemisphere 50.3
2566 Female, age 72, unknown 47.8
1818 Male, age 74, unknown 42.5
2037 Male, age 80, right hemisphere 40.1
2483 Female, age 94, right hemisphere 32.7
Nucleus accumbens
nTPM: 39.7
2286 Male, age 75, left hemisphere 46.1
2824 Male, age 61, right hemisphere 46.1
2391 Female, age 94, left hemisphere 43.3
2698 Female, age 72, unknown 42.0
1783 Male, age 74, unknown 35.7
1806 Female, age 85, left hemisphere 35.2
2732 Male, age 80, right hemisphere 34.6
1856 Female, age 91, right hemisphere 34.5
Nucleus basalis of Meynert
nTPM: 39.4
2393 Male, age 80, right hemisphere 47.0
2821 Male, age 75, both hemispheres 45.9
2484 Female, age 94, left hemisphere 33.0
2569 Male, age 61, both hemispheres 31.9
Nucleus of the diagonal band
nTPM: 39.8
2029 Male, age 61, right hemisphere 44.8
2775 Male, age 80, right hemisphere 43.4
2195 Female, age 85, both hemispheres 41.3
1812 Female, age 91, both hemispheres 40.9
1979 Male, age 74, unknown 28.7
Olfactory tubercle
nTPM: 40.4
1846 Male, age 80, right hemisphere 43.1
2856 Male, age 75, right hemisphere 42.6
1998 Female, age 91, both hemispheres 39.3
2487 Female, age 94, left hemisphere 36.7
Putamen
nTPM: 46.5
1829 Male, age 74, unknown 57.8
1838 Male, age 80, right hemisphere 48.8
2466 Female, age 79, unknown 48.8
2647 Male, age 75, left hemisphere 48.2
2489 Female, age 72, unknown 46.5
1937 Female, age 91, right hemisphere 40.6
2482 Female, age 94, left hemisphere 34.9
Septal nuclei
nTPM: 36.1
2629 Female, age 94, right hemisphere 43.9
1960 Male, age 74, unknown 41.6
2009 Female, age 91, both hemispheres 36.8
2031 Female, age 72, unknown 35.2
2199 Male, age 80, right hemisphere 32.6
2059 Female, age 85, both hemispheres 32.5
2394 Male, age 61, left hemisphere 29.8

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 43.3
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 43.2
Samples: 246

Max nTPM: 109.7
Min nTPM: 13.1
Std nTPM: 13.2
Median nTPM: 41.0
GTEX-T2IS-0011-R5A-SM-32QP4 20-29 years, female 109.7
GTEX-ZAB4-0011-R5a-SM-4SOKC 40-49 years, male 84.0
GTEX-1HCVE-0011-R5b-SM-CKZP7 50-59 years, male 78.2
GTEX-PVOW-0011-R5A-SM-32PL7 40-49 years, male 77.4
GTEX-1AX9I-0011-R5b-SM-793DI 60-69 years, male 75.9
GTEX-P44H-0011-R5A-SM-2XCEX 40-49 years, male 74.0
GTEX-UTHO-0011-R5A-SM-3GIJD 60-69 years, male 73.9
GTEX-QVJO-0011-R5A-SM-2S1QM 60-69 years, female 73.6
GTEX-13O3O-0011-R5b-SM-5KM44 60-69 years, female 72.3
GTEX-1F7RK-0011-R5b-SM-9WG5S 20-29 years, female 70.4
GTEX-Z93S-0011-R5b-SM-4RGNI 50-59 years, male 70.2
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Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 38.5
Samples: 246

Max nTPM: 72.8
Min nTPM: 10.5
Std nTPM: 9.8
Median nTPM: 38.6
GTEX-UTHO-0011-R6A-SM-3GIJW 60-69 years, male 72.8
GTEX-1HFI6-0011-R6b-SM-CM2SR 40-49 years, male 71.8
GTEX-QVJO-0011-R6A-SM-2S1QN 60-69 years, female 68.4
GTEX-1F7RK-0011-R6b-SM-ARZMG 20-29 years, female 60.6
GTEX-1LH75-0011-R6a-SM-EXURS 50-59 years, female 57.9
GTEX-16YQH-0011-R6b-SM-7938T 30-39 years, male 57.5
GTEX-ZUA1-0011-R6b-SM-4YCDD 40-49 years, male 57.2
GTEX-NL3H-0011-R6a-SM-2I3G8 60-69 years, male 56.9
GTEX-1I1HK-0011-R6b-SM-CM2T9 60-69 years, male 56.4
GTEX-NPJ7-0011-R6a-SM-2I3G7 60-69 years, female 56.1
GTEX-14BIN-0011-R6a-SM-5S2RH 50-59 years, female 55.4
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Brain - Putamen (basal ganglia)
Average nTPM: 43.3
Samples: 205

Max nTPM: 98.6
Min nTPM: 16.4
Std nTPM: 13.7
Median nTPM: 41.4
GTEX-14C5O-0011-R7b-SM-5YYAH 60-69 years, male 98.6
GTEX-1HB9E-0011-R7b-SM-A9G1Q 50-59 years, male 83.6
GTEX-QVJO-0011-R7A-SM-2S1QO 60-69 years, female 82.4
GTEX-RNOR-0011-R7A-SM-2TF4V 50-59 years, female 79.9
GTEX-13RTJ-0011-R7b-SM-5P9JS 60-69 years, male 74.4
GTEX-QDT8-0011-R7A-SM-32PKF 30-39 years, female 73.9
GTEX-1AX9I-0011-R7b-SM-7P8Q3 60-69 years, male 73.2
GTEX-15CHQ-0011-R7b-SM-D4P1Q 60-69 years, male 72.1
GTEX-1EMGI-0011-R7b-SM-9QEH5 60-69 years, male 72.1
GTEX-1I1CD-0011-R7a-SM-CMKHA 60-69 years, female 71.1
GTEX-1B933-0011-R7a-SM-7DUGX 50-59 years, female 70.1
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BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 88.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 68.3
FF:10164-103B2 76 years, female 68.3
Globus pallidus
Scaled Tags Per Million: 76.6
FF:10175-103C4 60 years, female 77.3
FF:10161-103A8 76 years, female 75.8
Nucleus accumbens
Scaled Tags Per Million: 86.7
FF:10037-101F1 23-56 years, mixed 86.7
Putamen
Scaled Tags Per Million: 88.8
FF:10176-103C5 60 years, female 88.8

BASAL GANGLIA - Pig RNA-seqi
Average nTPM 32.3
Pig sample Sample description nTPM
Caudate
nTPM: 29.7
Samples: 4

Max nTPM: 30.9
Min nTPM: 27.4
Sample A Female 27.4
Sample B Female 30.9
Sample C Male 30.5
Sample D Male 30.0
Putamen
nTPM: 30.1
Samples: 4

Max nTPM: 33.8
Min nTPM: 25.9
Sample A Female 25.9
Sample B Female 30.9
Sample C Male 33.8
Sample D Male 29.9
Septum
nTPM: 32.3
Samples: 4

Max nTPM: 35.5
Min nTPM: 30.4
Sample A Female 32.3
Sample B Female 35.5
Sample C Male 30.9
Sample D Male 30.4
Ventral pallidum
nTPM: 31.9
Samples: 4

Max nTPM: 33.5
Min nTPM: 29.6
Sample A Female 33.5
Sample B Female 31.0
Sample C Male 33.3
Sample D Male 29.6

BASAL GANGLIA - Mouse RNA-seqi
Average nTPM 14.2
Mouse sample Sample description nTPM
Caudate putamen
nTPM: 14.2
Samples: 4

Max nTPM: 15.8
Min nTPM: 13.3
Sample A Male 13.3
Sample B Male 13.5
Sample C Female 15.8
Sample D Female 14.1
Septum
nTPM: 13.0
Samples: 4

Max nTPM: 13.8
Min nTPM: 11.2
Sample A Male 13.3
Sample B Male 13.5
Sample C Female 11.2
Sample D Female 13.8
Ventral forebrain
nTPM: 13.3
Samples: 4

Max nTPM: 15.5
Min nTPM: 10.9
Sample A Male 15.5
Sample B Male 13.5
Sample C Female 10.9
Sample D Female 13.2

BASAL GANGLIA - Allen Mouse ISHi
Max Expression energy 9.7
Allen experiment id Experiment description Expression energy
Striatum
Expression energy: 9.7
70302111 Antisense, RP_050607_03_F04, Mouse strain C57BL/6J (56 days, male) 12.4
74988334 Antisense, RP_060315_05_D02, Mouse strain C57BL/6J (56 days, male) 7.1
Pallidum
Expression energy: 7.0
70302111 Antisense, RP_050607_03_F04, Mouse strain C57BL/6J (56 days, male) 9.5
74988334 Antisense, RP_060315_05_D02, Mouse strain C57BL/6J (56 days, male) 4.5

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The Human Protein Atlas

The Human Protein Atlas project is funded
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