BASAL GANGLIA - Expression summary
Protein expression
Caudatei
h
m
l
n
Glial cells: Low
Neuronal cells: Low
Protein profiling
Multiplex tissuei
RNA expressioni
Consensus:42.5 nTPM
HPA:42.5 nTPM
GTEx:44.2 nTPM
FANTOM5:47.6 Scaled Tags Per Million
Pig:8.5 nTPM
Mouse:22.8 nTPM
Allen mouse:0.0 Expression energy

CAUDATE - Antibody stainingi
Antibody HPA041353
Glial cells Low
Neuronal cells Low



BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 42.5
Sample id Sample description nTPM
Caudate nucleus
nTPM: 40.9
1854 Male, age 80, left hemisphere 42.3
2288 Male, age 75, left hemisphere 41.4
1781 Male, age 74, unknown 41.1
2290 Female, age 72, unknown 41.0
1857 Female, age 85, left hemisphere 40.7
2846 Female, age 79, unknown 40.6
2481 Female, age 94, left hemisphere 40.4
2289 Male, age 61, right hemisphere 39.7
Claustrum
nTPM: 40.5
1956 Male, age 74, unknown 42.3
2196 Female, age 79, unknown 41.9
2198 Male, age 80, both hemispheres 41.8
2491 Male, age 75, both hemispheres 41.3
2568 Male, age 61, both hemispheres 41.2
2292 Female, age 85, both hemispheres 40.4
2645 Female, age 72, unknown 38.8
2284 Female, age 91, both hemispheres 38.5
2392 Female, age 94, both hemispheres 38.1
Globus pallidus, externus
nTPM: 42.2
2772 Female, age 79, unknown 43.6
1996 Male, age 80, right hemisphere 43.2
2395 Male, age 75, both hemispheres 43.1
2646 Male, age 61, right hemisphere 42.7
2567 Female, age 72, unknown 38.5
Globus pallidus, internus
nTPM: 42.5
2287 Male, age 75, right hemisphere 47.1
2111 Female, age 85, right hemisphere 42.4
2778 Female, age 91, both hemispheres 42.2
2037 Male, age 80, right hemisphere 42.1
1818 Male, age 74, unknown 41.9
2483 Female, age 94, right hemisphere 41.6
2566 Female, age 72, unknown 40.3
Nucleus accumbens
nTPM: 41.3
1856 Female, age 91, right hemisphere 43.3
2286 Male, age 75, left hemisphere 42.4
2698 Female, age 72, unknown 42.4
1783 Male, age 74, unknown 41.1
1806 Female, age 85, left hemisphere 40.9
2391 Female, age 94, left hemisphere 40.8
2824 Male, age 61, right hemisphere 39.9
2732 Male, age 80, right hemisphere 39.6
Nucleus basalis of Meynert
nTPM: 40.6
2569 Male, age 61, both hemispheres 42.8
2393 Male, age 80, right hemisphere 40.3
2821 Male, age 75, both hemispheres 40.0
2484 Female, age 94, left hemisphere 39.2
Nucleus of the diagonal band
nTPM: 40.5
1812 Female, age 91, both hemispheres 42.1
2775 Male, age 80, right hemisphere 42.0
2029 Male, age 61, right hemisphere 40.8
2195 Female, age 85, both hemispheres 39.6
1979 Male, age 74, unknown 38.2
Olfactory tubercle
nTPM: 40.5
2487 Female, age 94, left hemisphere 41.6
1998 Female, age 91, both hemispheres 41.0
1846 Male, age 80, right hemisphere 40.7
2856 Male, age 75, right hemisphere 38.5
Putamen
nTPM: 40.8
1838 Male, age 80, right hemisphere 42.3
1937 Female, age 91, right hemisphere 41.7
2482 Female, age 94, left hemisphere 41.4
1829 Male, age 74, unknown 40.8
2466 Female, age 79, unknown 40.3
2647 Male, age 75, left hemisphere 39.9
2489 Female, age 72, unknown 38.9
Septal nuclei
nTPM: 39.6
1960 Male, age 74, unknown 41.2
2031 Female, age 72, unknown 41.2
2629 Female, age 94, right hemisphere 40.4
2009 Female, age 91, both hemispheres 39.7
2059 Female, age 85, both hemispheres 38.4
2199 Male, age 80, right hemisphere 38.4
2394 Male, age 61, left hemisphere 38.1

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 44.2
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 39.2
Samples: 246

Max nTPM: 75.3
Min nTPM: 17.2
Std nTPM: 8.7
Median nTPM: 38.2
GTEX-1H3O1-0011-R5b-SM-ADEH8 60-69 years, male 75.3
GTEX-1IL2U-0011-R5a-SM-CE6SN 60-69 years, male 72.9
GTEX-14JIY-0011-R5b-SM-62LE7 60-69 years, male 65.5
GTEX-1GN2E-0011-R5b-SM-CJI2M 60-69 years, male 58.6
GTEX-1RNSC-0011-R5a-SM-EZ6N5 60-69 years, male 57.4
GTEX-ZUA1-0011-R5b-SM-51MTG 40-49 years, male 56.7
GTEX-11DXW-0011-R5b-SM-DO11D 40-49 years, male 56.7
GTEX-1EN7A-0011-R5a-SM-9QEH6 40-49 years, male 56.6
GTEX-1HT8W-0011-R5b-SM-CJI3P 30-39 years, male 55.9
GTEX-1HCVE-0011-R5b-SM-CKZP7 50-59 years, male 55.2
GTEX-13X6K-0011-R5b-SM-5PNUE 60-69 years, female 54.8
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Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 42.6
Samples: 246

Max nTPM: 92.4
Min nTPM: 20.4
Std nTPM: 10.3
Median nTPM: 41.7
GTEX-14753-0011-R6b-SM-5S2UD 60-69 years, male 92.4
GTEX-1RLM8-0011-R6a-SM-EYYXS 50-59 years, male 80.8
GTEX-1IGQW-0011-R6a-SM-CM2TC 60-69 years, male 76.5
GTEX-1LVAO-0011-R6b-SM-EZ6MX 60-69 years, male 72.8
GTEX-1LC47-0011-R6b-SM-EZ6MI 60-69 years, male 71.1
GTEX-1H3VE-0011-R6b-SM-A9G1M 40-49 years, male 70.4
GTEX-13FHO-0011-R6b-SM-5LZX1 60-69 years, male 69.2
GTEX-17EVQ-0011-R6a-SM-7189U 70-79 years, male 67.2
GTEX-12584-0011-R6a-SM-5NQ7C 40-49 years, male 66.5
GTEX-1HUB1-0011-R6b-SM-ARU6W 60-69 years, male 63.8
GTEX-18A6Q-0011-R6a-SM-7LG6R 60-69 years, male 61.4
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Brain - Putamen (basal ganglia)
Average nTPM: 44.2
Samples: 205

Max nTPM: 70.2
Min nTPM: 20.9
Std nTPM: 9.3
Median nTPM: 43.2
GTEX-1IKOH-0011-R7b-SM-CKZPH 60-69 years, female 70.2
GTEX-17F97-0011-R7b-SM-7MGVY 50-59 years, male 69.1
GTEX-15CHQ-0011-R7b-SM-D4P1Q 60-69 years, male 63.6
GTEX-132Q8-0011-R7b-SM-5N9F1 60-69 years, male 62.5
GTEX-1R46S-0011-R7b-SM-EXUTH 60-69 years, female 62.2
GTEX-1LH75-0011-R7a-SM-EXOIF 50-59 years, female 60.9
GTEX-1I1GQ-0011-R7a-SM-CJI41 50-59 years, male 60.8
GTEX-12WSF-0011-R7b-SM-5HL99 70-79 years, male 60.4
GTEX-S7SE-0011-R7A-SM-2XCDI 50-59 years, male 60.4
GTEX-1HCVE-0011-R7b-SM-A9G1I 50-59 years, male 60.1
GTEX-1LVAO-0011-R7a-SM-EYYWZ 60-69 years, male 60.1
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BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 47.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 35.6
FF:10164-103B2 76 years, female 35.6
Globus pallidus
Scaled Tags Per Million: 38.9
FF:10175-103C4 60 years, female 44.2
FF:10161-103A8 76 years, female 33.6
Nucleus accumbens
Scaled Tags Per Million: 42.0
FF:10037-101F1 23-56 years, mixed 42.0
Putamen
Scaled Tags Per Million: 47.6
FF:10176-103C5 60 years, female 47.6

BASAL GANGLIA - Pig RNA-seqi
Average nTPM 8.5
Pig sample Sample description nTPM
Caudate
nTPM: 7.2
Samples: 4

Max nTPM: 7.7
Min nTPM: 6.5
Sample A Female 6.5
Sample B Female 7.7
Sample C Male 7.4
Sample D Male 7.1
Putamen
nTPM: 8.1
Samples: 4

Max nTPM: 10.1
Min nTPM: 6.9
Sample A Female 10.1
Sample B Female 6.9
Sample C Male 7.0
Sample D Male 8.4
Septum
nTPM: 8.5
Samples: 4

Max nTPM: 9.6
Min nTPM: 8.1
Sample A Female 8.1
Sample B Female 8.1
Sample C Male 8.3
Sample D Male 9.6
Ventral pallidum
nTPM: 7.9
Samples: 4

Max nTPM: 8.6
Min nTPM: 6.3
Sample A Female 6.3
Sample B Female 8.6
Sample C Male 8.6
Sample D Male 8.0

BASAL GANGLIA - Mouse RNA-seqi
Average nTPM 22.8
Mouse sample Sample description nTPM
Caudate putamen
nTPM: 22.8
Samples: 4

Max nTPM: 27.2
Min nTPM: 20.1
Sample A Male 21.2
Sample B Male 27.2
Sample C Female 20.1
Sample D Female 22.7
Septum
nTPM: 18.4
Samples: 4

Max nTPM: 22.7
Min nTPM: 13.6
Sample A Male 13.6
Sample B Male 19.0
Sample C Female 18.2
Sample D Female 22.7
Ventral forebrain
nTPM: 16.0
Samples: 4

Max nTPM: 17.1
Min nTPM: 14.1
Sample A Male 14.1
Sample B Male 16.6
Sample C Female 16.1
Sample D Female 17.1

BASAL GANGLIA - Allen Mouse ISHi
Max Expression energy 0.0
Allen experiment id Experiment description Expression energy
Striatum
Expression energy: 0.0
69549178 Antisense, RP_050118_02_H10, Mouse strain C57BL/6J (56 days, male) 0.0
Pallidum
Expression energy: 0.0
69549178 Antisense, RP_050118_02_H10, Mouse strain C57BL/6J (56 days, male) 0.0

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