MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:20.8 nTPM
HPA:20.8 nTPM
GTEx:24.9 nTPM
FANTOM5:84.4 Scaled Tags Per Million
Pig:54.0 nTPM
Mouse:57.2 nTPM
Allen mouse:14.3 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 20.8
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 17.7
1833 Male, age 53, unknown 23.5
2666 Male, age 74, left hemisphere 21.4
1830 Male, age 51, unknown 20.6
1870 Female, age 42, unknown 20.2
2586 Male, age 75, left hemisphere 19.5
2019 Male, age 18, unknown 17.0
1827 Male, age 72, unknown 14.5
2219 Male, age 76, both hemispheres 13.7
2828 Female, age 72, unknown 13.3
2411 Female, age 72, unknown 13.2
Dorsal raphe nucleus
nTPM: 12.7
2750 Male, age 76, both hemispheres 17.8
2047 Male, age 72, unknown 14.5
1828 Male, age 53, unknown 14.4
2016 Female, age 72, unknown 12.4
2298 Female, age 72, unknown 4.5
Inferior colliculus
nTPM: 15.0
2849 Male, age 72, unknown 26.7
1848 Female, age 42, unknown 15.5
1890 Male, age 53, unknown 10.8
2097 Female, age 72, unknown 7.2
Median raphe nucleus
nTPM: 19.9
2220 Male, age 76, midline 19.9
Pedunculopontine tegmental nucleus
nTPM: 20.8
2338 Male, age 61, both hemispheres 26.7
2334 Male, age 80, both hemispheres 21.5
1921 Female, age 85, both hemispheres 14.2
Periaquaductal grey, anterior
nTPM: 14.3
2502 Female, age 75, unknown 18.6
1947 Male, age 18, unknown 15.4
1795 Male, age 51, unknown 8.9
Periaquaductal grey, dorsal
nTPM: 14.2
2850 Male, age 76, both hemispheres 24.4
1840 Male, age 53, unknown 11.5
1831 Male, age 72, unknown 11.2
2464 Female, age 72, unknown 9.6
Periaquaductal grey, lateral
nTPM: 14.3
2140 Male, age 76, both hemispheres 16.3
2053 Male, age 18, unknown 14.3
2272 Male, age 74, both hemispheres 12.4
Pretectal area
nTPM: 14.9
1815 Male, age 53, unknown 23.3
2407 Male, age 75, both hemispheres 21.3
1817 Female, age 42, unknown 19.9
1816 Male, age 51, unknown 18.5
2825 Male, age 18, unknown 17.2
1944 Female, age 72, unknown 16.2
2007 Male, age 72, unknown 15.7
2667 Female, age 75, unknown 10.0
2224 Female, age 72, unknown 9.1
2273 Male, age 74, both hemispheres 6.3
2316 Male, age 76, right hemisphere 6.2
Red nucleus
nTPM: 20.0
2588 Male, age 74, left hemisphere 27.8
1865 Male, age 51, unknown 23.9
2584 Male, age 75, left hemisphere 23.5
1821 Female, age 72, unknown 22.9
2503 Female, age 72, unknown 21.9
1954 Female, age 42, unknown 20.5
1904 Male, age 53, unknown 20.2
2725 Female, age 75, unknown 17.7
2785 Male, age 18, unknown 17.6
2769 Male, age 72, unknown 15.1
2227 Male, age 72, unknown 14.7
2823 Male, age 76, right hemisphere 13.9
Substantia nigra
nTPM: 19.8
2699 Male, age 18, unknown 24.7
2409 Female, age 72, unknown 22.1
2241 Male, age 72, unknown 21.5
2665 Male, age 74, both hemispheres 21.2
1916 Female, age 42, unknown 20.7
2590 Female, age 75, unknown 19.9
1851 Male, age 51, unknown 18.9
1889 Female, age 72, unknown 18.7
2583 Male, age 75, right hemisphere 16.5
1941 Male, age 53, unknown 14.0
Superior colliculus
nTPM: 15.6
2587 Male, age 74, left hemisphere 25.9
2668 Female, age 75, unknown 17.8
1913 Female, age 42, unknown 16.2
1839 Male, age 51, unknown 15.9
1895 Male, age 76, right hemisphere 15.8
1796 Male, age 53, unknown 15.2
1995 Male, age 72, unknown 15.0
2664 Male, age 75, both hemispheres 13.5
2087 Female, age 72, unknown 10.3
2261 Male, age 18, unknown 10.1
Ventral tegmental area
nTPM: 16.6
2223 Female, age 72, unknown 22.9
2218 Male, age 76, both hemispheres 18.5
2410 Female, age 72, unknown 17.9
1915 Female, age 42, unknown 15.1
2021 Male, age 53, unknown 12.9
1942 Male, age 51, unknown 12.2

MIDBRAIN - GTEx RNA-seqi
Average nTPM 24.9
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 24.9
Samples: 139

Max nTPM: 36.8
Min nTPM: 12.1
Std nTPM: 4.6
Median nTPM: 24.6
GTEX-NL4W-0011-R2a-SM-2I5GV 50-59 years, male 36.8
GTEX-NPJ8-0011-R2a-SM-2TC6M 40-49 years, male 35.4
GTEX-NPJ7-0011-R2a-SM-2I3GF 60-69 years, female 35.3
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 35.0
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 34.7
GTEX-1GTWX-0011-R2b-SM-ADEH5 60-69 years, male 33.4
GTEX-ZAB4-0011-R2a-SM-4RGNP 40-49 years, male 33.3
GTEX-1HR98-0011-R2a-SM-ARL7A 60-69 years, male 32.6
GTEX-N7MT-0011-R2a-SM-2I3GI 60-69 years, female 32.4
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 31.7
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 31.6
Show allShow less

MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 84.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 84.4
FF:10158-103A5 76 years, female 84.4

MIDBRAIN - Pig RNA-seqi
Average nTPM 54.0
Pig sample Sample description nTPM
Midbrain
nTPM: 54.0
Samples: 4

Max nTPM: 64.5
Min nTPM: 47.3
Sample A Female 64.5
Sample B Female 48.9
Sample C Male 55.1
Sample D Male 47.3
Periaqueductal gray
nTPM: 46.0
Samples: 3

Max nTPM: 48.7
Min nTPM: 42.5
Sample B Female 48.7
Sample C Male 46.7
Sample D Male 42.5
Substantia nigra
nTPM: 51.8
Samples: 4

Max nTPM: 54.6
Min nTPM: 47.4
Sample A Female 54.6
Sample B Female 47.4
Sample C Male 52.8
Sample D Male 52.3
Superior colliculi
nTPM: 52.1
Samples: 4

Max nTPM: 53.4
Min nTPM: 49.5
Sample A Female 53.4
Sample B Female 52.5
Sample C Male 52.8
Sample D Male 49.5

MIDBRAIN - Mouse RNA-seqi
Average nTPM 57.2
Mouse sample Sample description nTPM
Midbrain
nTPM: 57.3
Samples: 4

Max nTPM: 62.2
Min nTPM: 46.6
Sample A Male 46.6
Sample B Male 62.2
Sample C Female 61.0
Sample D Female 59.3

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 14.3
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 14.3
67815967 Antisense, RP_040920_02_D10, Mouse strain C57BL/6J (56 days, male) 14.3

Contact

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.