HIPPOCAMPAL FORMATION - Expression summary
Protein expression
Hippocampusi
h
m
l
n
Glial cells: Not detected
Neuronal cells: High
Mouse brain, Intensity
Hippocampal formationi 		90.180
Protein profiling
Multiplex tissuei
RNA expressioni
Consensus:229.7 nTPM
HPA:229.7 nTPM
GTEx:427.2 nTPM
FANTOM5:851.9 Scaled Tags Per Million
Pig:533.7 nTPM
Mouse:482.6 nTPM
Allen mouse:23.6 Expression energy

HIPPOCAMPUS - Antibody stainingi
Antibody HPA005993Antibody CAB002580
Glial cells MediumNot detected
Neuronal cells HighHigh





HIPPOCAMPAL FORMATION - Mouse brain profilei , antibody CAB079024
Hippocampal formation mean intensity 90.180
intensityi
FRONT BACK
Polymorph layer of the dentate gyrus 64.863
Molecular layer of the dentate gyrus 55.265
Granular dentate gyrus 35.970
CA1 - oriens layer 49.595
CA1 - pyramidal layer 46.593
CA1 - radiatum layer 55.256
CA2 - oriens layer 71.373
CA2 - pyramidal layer 69.925
CA2 - radiatum layer 75.225
CA3 - oriens layer 90.180
CA3 - pyramidal layer 80.830
CA3 - radiatum layer 78.164
Stratum lucidum 69.347
Lacunosum moleculare 41.510
Subiculum 58.788

HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max nTPM 229.7
Sample id Sample description nTPM
Hippocampus
nTPM: 105.8
1898 Male, age 80, left hemisphere 222.7
2621 Female, age 67, right hemisphere 195.4
2148 Female, age 91, left hemisphere 94.7
1855 Male, age 76, left hemisphere 65.9
1911 Female, age 85, right hemisphere 56.3
2529 Female, age 94, left hemisphere 0.0
Dentate gyrus
nTPM: 133.9
1927 Female, age 91, both hemispheres 298.5
2010 Male, age 76, both hemispheres 145.4
2528 Male, age 74, both hemispheres 137.2
2530 Female, age 94, left hemisphere 93.5
2246 Female, age 85, both hemispheres 84.2
2531 Female, age 67, both hemispheres 44.9
Entorhinal gyrus
nTPM: 109.5
2764 Male, age 80, right hemisphere 219.5
2613 Female, age 94, left hemisphere 214.9
1938 Female, age 85, left hemisphere 131.7
1787 Male, age 76, left hemisphere 82.8
2117 Female, age 91, right hemisphere 7.9
2686 Male, age 75, right hemisphere 0.0
Hippocampus, CA1
nTPM: 213.5
2749 Male, age 80, left hemisphere 505.7
2527 Male, age 74, both hemispheres 178.6
2082 Female, age 91, right hemisphere 161.4
1873 Female, age 85, both hemispheres 125.6
2045 Male, age 76, both hemispheres 96.3
Hippocampus, CA2
nTPM: 142.1
1963 Male, age 80, left hemisphere 252.6
2249 Male, age 74, both hemispheres 206.9
1892 Male, age 76, both hemispheres 184.0
2113 Female, age 91, right hemisphere 87.9
1940 Female, age 85, left hemisphere 71.8
2437 Female, age 94, left hemisphere 49.1
Hippocampus, CA3
nTPM: 116.0
2137 Male, age 80, left hemisphere 239.7
2436 Male, age 74, both hemispheres 197.0
1867 Male, age 76, both hemispheres 91.8
2620 Female, age 94, left hemisphere 80.9
2861 Female, age 67, both hemispheres 59.6
1891 Female, age 85, both hemispheres 27.0
Parahippocampal cortex
nTPM: 120.5
1990 Female, age 91, right hemisphere 172.1
1850 Male, age 80, both hemispheres 171.5
2245 Female, age 91, both hemispheres 170.4
2250 Female, age 67, right hemisphere 168.5
1933 Female, age 85, both hemispheres 166.4
2622 Female, age 67, right hemisphere 105.6
2693 Female, age 94, both hemispheres 100.7
2532 Female, age 72, left hemisphere 87.1
2018 Male, age 76, both hemispheres 62.7
2692 Male, age 74, both hemispheres 0.0
Perirhinal gyrus
nTPM: 229.7
1847 Female, age 91, left hemisphere 411.1
2521 Female, age 94, right hemisphere 268.9
1794 Male, age 80, right hemisphere 224.1
1841 Female, age 85, right hemisphere 152.6
2848 Male, age 76, right hemisphere 91.6
Subiculum
nTPM: 38.0
1977 Female, age 85, both hemispheres 112.3
1901 Male, age 80, both hemispheres 90.3
2729 Female, age 91, right hemisphere 15.2
2619 Male, age 74, both hemispheres 10.2
2042 Male, age 76, both hemispheres 0.0
2438 Female, age 94, left hemisphere 0.0

HIPPOCAMPAL FORMATION - GTEx RNA-seqi
Average nTPM 427.2
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 427.2
Samples: 197

Max nTPM: 1774.1
Min nTPM: 42.2
Std nTPM: 346.9
Median nTPM: 330.5
GTEX-13O3O-0011-R1b-SM-5KM2K 60-69 years, female 1774.1
GTEX-139TT-0011-R1a-SM-5LZVD 60-69 years, male 1398.7
GTEX-1EMGI-0011-R1b-SM-9OSWZ 60-69 years, male 1372.8
GTEX-WHSE-0011-R1A-SM-3P5ZK 20-29 years, male 1366.4
GTEX-1F75A-0011-R1b-SM-CE6RA 50-59 years, male 1325.7
GTEX-1AX9I-0011-R1b-SM-7RHG2 60-69 years, male 1288.5
GTEX-131XH-0011-R1a-SM-5DUWA 50-59 years, male 1280.1
GTEX-X585-0011-R1B-SM-46MVE 50-59 years, male 1184.5
GTEX-1ICLZ-0011-R1b-SM-A9SM3 60-69 years, male 1182.6
GTEX-13FXS-0011-R1a-SM-5K7U6 50-59 years, male 1181.8
GTEX-YFC4-0011-R1a-SM-4V6EH 40-49 years, female 1170.1
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
Max Scaled Tags Per Million 851.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 851.9
FF:10169-103B7 60 years, female 1339.3
FF:10153-102I9 76 years, female 364.5

HIPPOCAMPAL FORMATION - Pig RNA-seqi
Average nTPM 533.7
Pig sample Sample description nTPM
Dorsal hippocampus
nTPM: 528.9
Samples: 4

Max nTPM: 794.0
Min nTPM: 340.9
Sample A Female 794.0
Sample B Female 630.2
Sample C Male 340.9
Sample D Male 350.5
Entorhinal cortex
nTPM: 380.8
Samples: 4

Max nTPM: 461.9
Min nTPM: 309.1
Sample A Female 461.9
Sample B Female 350.2
Sample C Male 402.1
Sample D Male 309.1
Subiculum
nTPM: 471.0
Samples: 4

Max nTPM: 588.3
Min nTPM: 429.6
Sample A Female 588.3
Sample B Female 434.0
Sample C Male 429.6
Sample D Male 431.9
Ventral hippocampus
nTPM: 533.8
Samples: 4

Max nTPM: 649.6
Min nTPM: 323.1
Sample A Female 632.6
Sample B Female 323.1
Sample C Male 649.6
Sample D Male 529.7

HIPPOCAMPAL FORMATION - Mouse RNA-seqi
Average nTPM 482.6
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 482.6
Samples: 4

Max nTPM: 578.9
Min nTPM: 408.6
Sample A Male 421.0
Sample B Male 578.9
Sample C Female 408.6
Sample D Female 522.0
Hippocampal formation
nTPM: 442.1
Samples: 4

Max nTPM: 499.5
Min nTPM: 394.4
Sample A Male 401.1
Sample B Male 473.2
Sample C Female 394.4
Sample D Female 499.5

HIPPOCAMPAL FORMATION - Allen Mouse ISHi
Max Expression energy 23.6
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 23.6
79556674 Antisense, RP_071204_01_C07, Mouse strain C57BL/6J (56 days, male) 28.1
79632309 Antisense, RP_071204_01_C07, Mouse strain C57BL/6J (56 days, male) 22.9
1089 Antisense, RP_Baylor_253988, Mouse strain C57BL/6J (56 days, male) 19.1
1088 Antisense, RP_Baylor_253988, Mouse strain C57BL/6J (56 days, male) 15.7

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The Human Protein Atlas

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