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BRAIN SPINAL CORD Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA MIDBRAIN
OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
PRIMARY MOUSE DATA
ANTIBODIES
AND
VALIDATION
Brain proteome
SPINAL CORD - Expression summary
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:122.2 nTPM
HPA:122.2 nTPM
GTEx:375.2 nTPM
FANTOM5:411.0 Scaled Tags Per Million
Pig:842.5 nTPM

SPINAL CORD - HPA Brain RNA-seq
Max nTPM 122.2
Sample id Sample description nTPM
Cervical spinal cord, central gray
nTPM: 91.1
2194 Female, age 79, both hemispheres 146.3
2816 Male, age 47, midline 101.8
1981 Female, age 72, midline 101.5
2565 Male, age 75, midline 86.6
2048 Male, age 55, midline 19.0
Cervical spinal cord, dorsal horn
nTPM: 122.2
2296 Male, age 66, both hemispheres 267.2
2173 Female, age 72, unknown 178.4
2297 Male, age 75, both hemispheres 110.3
2069 Male, age 47, both hemispheres 93.9
2721 Male, age 90, both hemispheres 61.1
1877 Male, age 55, unknown 22.2
Cervical spinal cord, ventral horn
nTPM: 65.2
2820 Female, age 79, both hemispheres 133.6
2068 Male, age 55, unknown 127.7
2480 Male, age 75, both hemispheres 101.3
2098 Female, age 72, unknown 28.6
2295 Male, age 66, both hemispheres 0.0
2809 Male, age 90, both hemispheres 0.0

SPINAL CORD - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 375.2
GTEx sample id Sample description nTPM
Brain - Spinal cord (cervical c-1)
Average nTPM: 375.2
Samples: 159

Max nTPM: 1173.8
Min nTPM: 106.8
Std nTPM: 168.5
Median nTPM: 355.1
GTEX-1IKJJ-0011-R9a-SM-ARZLI 60-69 years, male 1173.8
GTEX-1ICLZ-0011-R9a-SM-ARL7E 60-69 years, male 1059.1
GTEX-1I1GS-0011-R9b-SM-CMKHF 60-69 years, male 784.9
GTEX-1GN73-0011-R9a-SM-CKZO5 60-69 years, male 756.0
GTEX-1F6I4-0011-R9a-SM-CMKFU 60-69 years, male 738.5
GTEX-1B933-0011-R9a-SM-79OOR 50-59 years, female 710.2
GTEX-12126-0011-R9b-SM-5BC6P 20-29 years, male 699.5
GTEX-1H3O1-0011-R9b-SM-CM2SQ 60-69 years, male 694.8
GTEX-R55E-0011-R9A-SM-2TC6C 20-29 years, male 692.4
GTEX-1GZ4I-0011-R9b-SM-B2LY8 50-59 years, male 687.1
GTEX-1HBPH-0011-R9a-SM-CMKH3 40-49 years, female 674.5
GTEX-139UW-0011-R9b-SM-5LZYT 60-69 years, male 642.3
GTEX-14BIM-0011-R9a-SM-6LLJL 60-69 years, female 636.3
GTEX-13N1W-0011-R9b-SM-5MR4R 70-79 years, male 629.7
GTEX-1GTWX-0011-R9a-SM-ADEH4 60-69 years, male 626.7
GTEX-1EKGG-0011-R9a-SM-CMKFV 60-69 years, male 625.2
GTEX-1A8G7-0011-R9b-SM-7IGQH 60-69 years, male 597.3
GTEX-145LU-0011-R9b-SM-5SI66 50-59 years, male 592.6
GTEX-1H1ZS-0011-R9a-SM-CM2SO 70-79 years, male 585.8
GTEX-1IY9M-0011-R9b-SM-D3L8J 60-69 years, male 581.0
GTEX-13VXU-0011-R9b-SM-5SI73 50-59 years, male 573.9
GTEX-1GN1U-0011-R9b-SM-CMKFW 50-59 years, female 568.4
GTEX-1I19N-0011-R9a-SM-CMKHN 70-79 years, male 557.0
GTEX-13PLJ-0011-R9b-SM-5O9DV 60-69 years, female 533.1
GTEX-1HBPI-0011-R9b-SM-ARL76 50-59 years, male 509.5
GTEX-1EWIQ-0011-R9a-SM-ARL8L 70-79 years, female 502.7
GTEX-1HFI6-0011-R9b-SM-CMKH4 40-49 years, male 502.2
GTEX-1HBPM-0011-R9b-SM-ARL7C 60-69 years, female 498.5
GTEX-1IDJH-0011-R9a-SM-ADEIN 70-79 years, male 490.8
GTEX-13SLX-0011-R9b-SM-5SI6X 50-59 years, female 487.6
GTEX-1I1CD-0011-R9a-SM-CMKHB 60-69 years, female 485.4
GTEX-14PJM-0011-R9b-SM-6EU35 50-59 years, female 483.3
GTEX-13FLV-0011-R9b-SM-5L3DA 50-59 years, male 479.5
GTEX-16Z82-0011-R9a-SM-7DUFA 60-69 years, male 478.2
GTEX-1A32A-0011-R9b-SM-7MGXD 50-59 years, female 471.9
GTEX-QVJO-0011-R9A-SM-2S1QH 60-69 years, female 465.8
GTEX-XMD1-0011-R9A-SM-4AT49 60-69 years, male 456.7
GTEX-11ZUS-0011-R9b-SM-5BC76 30-39 years, male 451.1
GTEX-13RTJ-0011-R9a-SM-5Q5AY 60-69 years, male 448.8
GTEX-1GZHY-0011-R9a-SM-9WG5R 50-59 years, female 441.5
GTEX-1192X-0011-R9b-SM-DO934 50-59 years, male 435.3
GTEX-13NYS-0011-R9b-SM-5MR44 60-69 years, male 434.6
GTEX-1RQEC-0011-R9a-SM-EZ6N3 60-69 years, male 433.7
GTEX-14ABY-0011-R9a-SM-5PNZK 50-59 years, male 430.4
GTEX-148VJ-0011-R9b-SM-5SI77 70-79 years, male 428.7
GTEX-14E7W-0011-R9a-SM-62LE6 70-79 years, male 421.6
GTEX-PWO3-0011-R9A-SM-EVR2V 60-69 years, female 421.1
GTEX-1R46S-0011-R9a-SM-EZ6N7 60-69 years, female 420.1
GTEX-1GZ2Q-0011-R9a-SM-9WG7A 40-49 years, male 418.8
GTEX-13PVQ-0011-R9b-SM-5LU3B 50-59 years, male 417.6
GTEX-14BIN-0011-R9a-SM-5SI76 50-59 years, female 415.8
GTEX-14JIY-0011-R9a-SM-6EU34 60-69 years, male 413.3
GTEX-13OVL-0011-R9a-SM-5P9GX 50-59 years, male 411.9
GTEX-1EU9M-0011-R9a-SM-9WG61 60-69 years, male 404.8
GTEX-131XW-0011-R9a-SM-5N9EO 50-59 years, female 400.1
GTEX-1JMLX-0011-R9a-SM-EYYXM 50-59 years, male 394.4
GTEX-1B8L1-0011-R9b-SM-9WG5U 60-69 years, male 394.2
GTEX-1KANB-0011-R9b-SM-EZ6MO 50-59 years, male 393.4
GTEX-14PN4-0011-R9a-SM-6LLH9 50-59 years, male 392.6
GTEX-1CAMQ-0011-R9a-SM-9WG5Z 40-49 years, male 392.0
GTEX-13NYB-0011-R9b-SM-5MR5P 40-49 years, male 390.5
GTEX-1F88F-0011-R9b-SM-9WG7L 60-69 years, female 388.8
GTEX-14BMV-0011-R9b-SM-5ZZUA 50-59 years, male 382.3
GTEX-QVUS-0011-R9A-SM-3GIJA 60-69 years, female 380.8
GTEX-1F52S-0011-R9a-SM-9WG62 60-69 years, female 378.5
GTEX-1EH9U-0011-R9b-SM-9WG5T 60-69 years, male 377.5
GTEX-13FXS-0011-R9a-SM-5K7UI 50-59 years, male 377.0
GTEX-1JN1M-0011-R9a-SM-EZ6MR 60-69 years, female 375.5
GTEX-1J8EW-0011-R9b-SM-D4P2F 60-69 years, female 373.3
GTEX-15EO6-0011-R9a-SM-6PALG 50-59 years, male 372.9
GTEX-1C6VQ-0011-R9a-SM-7SB85 50-59 years, male 372.9
GTEX-1CAV2-0011-R9b-SM-9WG5M 40-49 years, female 372.1
GTEX-15G19-0011-R9b-SM-7KUEE 60-69 years, male 371.1
GTEX-11UD2-0011-R9b-SM-DO926 50-59 years, male 368.9
GTEX-11ZTS-0011-R9b-SM-DO93Q 60-69 years, female 364.8
GTEX-1J8JJ-0011-R9a-SM-ACKVF 60-69 years, female 360.2
GTEX-13N2G-0011-R9b-SM-5MR4E 60-69 years, male 359.9
GTEX-13JUV-0011-R9a-SM-5LZX3 40-49 years, female 358.5
GTEX-ZVZQ-0011-R9a-SM-51MRH 60-69 years, female 355.3
GTEX-147GR-0011-R9a-SM-5S2UY 60-69 years, male 355.1
GTEX-1GF9V-0011-R9a-SM-CL53K 60-69 years, male 352.9
GTEX-13FTY-0011-R9b-SM-5KM2U 40-49 years, female 348.9
GTEX-RNOR-0011-R9A-SM-2TF52 50-59 years, female 344.9
GTEX-1LSNL-0011-R9b-SM-EYYWK 50-59 years, male 344.6
GTEX-11DZ1-0011-R9a-SM-DO933 50-59 years, male 343.6
GTEX-NPJ8-0011-R9a-SM-2YUN5 40-49 years, male 335.8
GTEX-18464-0011-R9a-SM-731BK 50-59 years, male 333.2
GTEX-1LVA9-0011-R9a-SM-EYYWF 50-59 years, male 330.3
GTEX-16NPV-0011-R9b-SM-79ONF 50-59 years, female 327.8
GTEX-17EVQ-0011-R9b-SM-79OJY 70-79 years, male 321.2
GTEX-11ZVC-0011-R9a-SM-57WC5 50-59 years, female 319.5
GTEX-1GN2E-0011-R9b-SM-9WG7F 60-69 years, male 316.4
GTEX-14E6C-0011-R9a-SM-6EU33 40-49 years, male 315.0
GTEX-YFC4-0011-R9a-SM-4SOK4 40-49 years, female 309.0
GTEX-16XZZ-0011-R9b-SM-7DHKX 60-69 years, male 307.9
GTEX-T6MN-0011-R9A-SM-32QOZ 50-59 years, male 304.1
GTEX-15DYW-0011-R9b-SM-6PALB 60-69 years, female 302.8
GTEX-1MJK2-0011-R9b-SM-EZ6MZ 50-59 years, male 299.5
GTEX-T5JC-0011-R9A-SM-32PLV 20-29 years, male 296.5
GTEX-131YS-0011-R9b-SM-5EQLY 60-69 years, female 296.2
GTEX-13CZV-0011-R9a-SM-5LZXT 60-69 years, male 295.8
GTEX-1IGQW-0011-R9b-SM-D4P25 60-69 years, male 293.7
GTEX-WL46-0011-R9A-SM-3MJFP 50-59 years, male 293.3
GTEX-13QJC-0011-R9b-SM-5PNX3 60-69 years, female 292.5
GTEX-12WSH-0011-R9b-SM-5LZUG 50-59 years, male 290.8
GTEX-ZE9C-0011-R9a-SM-4WWCY 60-69 years, male 288.3
GTEX-14PJO-0011-R9b-SM-62LE9 60-69 years, male 286.5
GTEX-12WSD-0011-R9a-SM-5GU6W 60-69 years, female 285.6
GTEX-QDT8-0011-R9A-SM-CYPRD 30-39 years, female 280.6
GTEX-13S7M-0011-R9a-SM-5O9DW 60-69 years, female 280.3
GTEX-1OJC4-0011-R9a-SM-EZ6N1 50-59 years, female 278.2
GTEX-14BIL-0011-R9a-SM-5SI7A 50-59 years, male 272.9
GTEX-NPJ7-0011-R9a-SM-2TC5R 60-69 years, female 272.2
GTEX-13NZA-0011-R9b-SM-5MR5I 60-69 years, male 271.8
GTEX-1LB8K-0011-R9a-SM-EZ6MP 50-59 years, male 269.0
GTEX-1CB4H-0011-R9a-SM-CKZNL 60-69 years, female 266.9
GTEX-ZAB4-0011-R9a-SM-4SOKG 40-49 years, male 266.5
GTEX-11GSP-0011-R9b-SM-5NQ77 60-69 years, female 260.4
GTEX-15ER7-0011-R9b-SM-6PALF 20-29 years, female 260.3
GTEX-11WQK-0011-R9b-SM-5BC6N 50-59 years, male 258.9
GTEX-1H3NZ-0011-R9a-SM-ADEH7 60-69 years, male 256.6
GTEX-1J1OQ-0011-R9b-SM-ARZMK 40-49 years, female 255.8
GTEX-OHPN-0011-R9A-SM-5TDEJ 60-69 years, female 254.2
GTEX-1HSMO-0011-R9b-SM-CM2T2 60-69 years, male 250.1
GTEX-11EMC-0011-R9b-SM-DO921 60-69 years, female 250.0
GTEX-1HGF4-0011-R9a-SM-ADEH9 60-69 years, male 246.1
GTEX-13OVJ-0011-R9b-SM-5L3GD 50-59 years, female 246.0
GTEX-1H23P-0011-R9a-SM-CM2T1 60-69 years, male 243.5
GTEX-YJ89-0011-R9a-SM-4SOK7 60-69 years, male 240.8
GTEX-1GF9W-0011-R9b-SM-9WG7J 60-69 years, male 239.4
GTEX-15DCD-0011-R9b-SM-7KUED 70-79 years, female 237.5
GTEX-12WSC-0011-R9a-SM-5GU4U 50-59 years, male 235.6
GTEX-Q2AG-0011-R9A-SM-2HMJ6 40-49 years, female 230.7
GTEX-139T4-0011-R9b-SM-5HL6S 50-59 years, female 228.8
GTEX-1BAJH-0011-R9b-SM-7EPIQ 70-79 years, male 228.2
GTEX-1H2FU-0011-R9b-SM-CE6S4 60-69 years, female 220.5
GTEX-1I1GV-0011-R9b-SM-ARZLE 60-69 years, male 215.0
GTEX-1I1HK-0011-R9a-SM-CMKHK 60-69 years, male 215.0
GTEX-XLM4-0011-R9A-SM-4AT45 60-69 years, male 212.4
GTEX-1C6VS-0011-R9b-SM-9WG5W 60-69 years, male 210.9
GTEX-1JJ6O-0011-R9a-SM-EYYXP 60-69 years, male 203.9
GTEX-13SLW-0011-R9a-SM-5O9BT 70-79 years, male 202.1
GTEX-1H1DF-0011-R9b-SM-CM2RN 40-49 years, female 199.0
GTEX-ZF28-0011-R9a-SM-4WWDY 60-69 years, male 198.3
GTEX-11ONC-0011-R9b-SM-5NQ8J 60-69 years, male 195.7
GTEX-NL4W-0011-R9a-SM-2I3G1 50-59 years, male 187.8
GTEX-13X6I-0011-R9b-SM-5PNZJ 60-69 years, male 174.2
GTEX-13OW5-0011-R9b-SM-5O9CL 60-69 years, male 173.7
GTEX-15DDE-0011-R9b-SM-6M46U 50-59 years, female 168.1
GTEX-13PL6-0011-R9b-SM-5O9CH 40-49 years, female 163.8
GTEX-1LVAO-0011-R9a-SM-EZ6MY 60-69 years, male 157.1
GTEX-1HR98-0011-R9b-SM-ARL79 60-69 years, male 149.2
GTEX-13O1R-0011-R9b-SM-5KM33 60-69 years, male 147.7
GTEX-OXRO-0011-R9A-SM-3NB1X 60-69 years, female 143.6
GTEX-15CHQ-0011-R9a-SM-6LLHX 60-69 years, male 142.9
GTEX-RU72-0011-R9A-SM-2TF67 50-59 years, female 142.5
GTEX-TSE9-0011-R9A-SM-3DB7Q 60-69 years, female 140.3
GTEX-1H1DG-0011-R9b-SM-ACKVB 70-79 years, male 137.7
GTEX-13CIG-0011-R9a-SM-5K7VU 50-59 years, male 106.8
Show allShow less

SPINAL CORD - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 411.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Spinal cord
Scaled Tags Per Million: 411.0
FF:10181-103D1 60 years, female 492.7
FF:10159-103A6 76 years, female 329.3

SPINAL CORD - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 842.5
Pig sample Sample description nTPM
Dorsal spinal cord
nTPM: 580.7
Samples: 4

Max nTPM: 717.8
Min nTPM: 464.8
Sample A Female 717.8
Sample B Female 477.3
Sample C Male 464.8
Sample D Male 662.7
Ventral spinal cord
nTPM: 842.6
Samples: 4

Max nTPM: 941.9
Min nTPM: 806.9
Sample A Female 813.7
Sample B Female 941.9
Sample C Male 806.9
Sample D Male 807.7

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The Human Protein Atlas project is funded
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