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BRAIN AMYGDALA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA MIDBRAIN
OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
PRIMARY MOUSE DATA
ANTIBODIES
AND
VALIDATION
Brain proteome
Amygdala
AMYGDALA - Expression summary
Mouse brain, Intensity
Amygdalai

Protein expression in mouse brain using immunofluorescence is reported as mean fluorescence intensity .

Read more
103.339
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:211.4 nTPM
HPA:211.4 nTPM
GTEx:428.2 nTPM
FANTOM5:702.9 Scaled Tags Per Million
Pig:374.6 nTPM
Mouse:805.7 nTPM
Allen mouse:29.4 Expression energy

AMYGDALA - Mouse brain profilei

Protein expression in mouse brain using immunofluorescence is reported as fluorescence intensity .

Read more
, antibody CAB079024
Amygdala mean intensity 103.339
intensityi

Protein expression in mouse brain using immunofluorescence is reported as mean fluorescence intensity .

Read more
FRONT BACK
Nucleus of the lateral olfactory tract 103.339
Basal medial amygdaloid nucleus 76.502
Basal lateral amygdala* -
Basal lateral amygdaloid nucleus 75.483
Cortical amygdala 71.596
Central amygdala 102.491
Medial amygdaloid nucleus 79.316

AMYGDALA - HPA Brain RNA-seq
Max nTPM 211.4
Sample id Sample description nTPM
Amygdala
nTPM: 41.5
1987 Female, age 91, left hemisphere 93.8
2814 Male, age 76, right hemisphere 92.0
2517 Female, age 94, left hemisphere 22.0
2514 Male, age 75, right hemisphere 0.0
2695 Female, age 67, right hemisphere 0.0
Basal amygdala
nTPM: 65.9
2243 Female, age 91, right hemisphere 164.4
2110 Male, age 80, left hemisphere 113.4
2685 Female, age 94, left hemisphere 71.0
1955 Male, age 76, both hemispheres 46.6
2609 Male, age 75, right hemisphere 0.0
2827 Female, age 67, right hemisphere 0.0
Central amygdala
nTPM: 44.0
2239 Male, age 80, left hemisphere 91.6
1905 Male, age 76, both hemispheres 84.9
2701 Female, age 91, right hemisphere 43.6
2515 Male, age 75, right hemisphere 0.0
2826 Female, age 94, left hemisphere 0.0
Corticomedial amygdala
nTPM: 80.9
2829 Male, age 80, left hemisphere 157.1
2242 Female, age 91, right hemisphere 151.4
2429 Female, age 94, left hemisphere 90.8
2240 Male, age 76, both hemispheres 44.6
2535 Female, age 67, right hemisphere 41.4
2428 Male, age 75, right hemisphere 0.0
Lateral amygdala
nTPM: 26.3
1883 Male, age 76, both hemispheres 128.0
2255 Female, age 91, right hemisphere 26.9
2534 Female, age 94, left hemisphere 2.9
2256 Male, age 80, left hemisphere 0.0
2516 Male, age 75, right hemisphere 0.0
2830 Female, age 67, right hemisphere 0.0
Stria terminalis, bed nucleus
nTPM: 211.4
1974 Female, age 91, both hemispheres 317.0
2486 Female, age 94, both hemispheres 261.1
2201 Male, age 74, unknown 56.2

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 428.2
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 428.2
Samples: 152

Max nTPM: 2479.4
Min nTPM: 60.1
Std nTPM: 346.8
Median nTPM: 307.2
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 2479.4
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 1379.7
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 1310.8
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 1283.9
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 1269.8
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 1255.5
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 1137.4
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 1110.8
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 1083.9
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 1080.4
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 1060.3
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 1027.0
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 935.7
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 931.5
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 907.0
GTEX-R55E-0011-R4A-SM-2TC5H 20-29 years, male 896.5
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 841.5
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 827.8
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 816.3
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 761.3
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 753.3
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 749.3
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 740.4
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 733.9
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 733.8
GTEX-T5JC-0011-R4A-SM-32PLT 20-29 years, male 714.1
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 704.2
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 697.8
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 665.5
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 655.7
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 649.4
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 623.5
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 623.3
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 619.9
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 610.4
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 599.3
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 592.8
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 586.8
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 586.1
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 584.5
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 576.5
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 563.5
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 528.9
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 526.6
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 515.7
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 497.5
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 489.7
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 487.4
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 486.6
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 473.7
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 469.1
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 457.1
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 448.4
GTEX-P44H-0011-R4A-SM-2XCEW 40-49 years, male 438.8
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 437.8
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 434.8
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 420.7
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 419.0
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 417.8
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 411.7
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 404.8
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 395.9
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 394.9
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 387.9
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 373.7
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 371.6
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 370.4
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 367.3
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 365.3
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 356.5
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 350.3
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 341.4
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 328.5
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 326.6
GTEX-Y8DK-0011-R4A-SM-EXUR1 60-69 years, male 310.0
GTEX-18464-0011-R4a-SM-7LG6T 50-59 years, male 308.5
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 305.8
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 299.1
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 288.1
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 287.5
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 285.8
GTEX-UTHO-0011-R4A-SM-3GIJP 60-69 years, male 285.6
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 284.3
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 283.9
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 280.7
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 279.2
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 275.5
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 270.8
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 262.9
GTEX-1JJEA-0011-R4a-SM-EXUTC 60-69 years, male 261.9
GTEX-1CB4J-0011-R4b-SM-9WG5P 60-69 years, male 261.1
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 256.1
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 253.7
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 248.6
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 247.9
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 245.4
GTEX-T6MN-0011-R4A-SM-32QPG 50-59 years, male 244.8
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 243.8
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 240.6
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 239.6
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 239.3
GTEX-P44G-0011-R4A-SM-2I3FB 30-39 years, male 238.4
GTEX-NL3H-0011-R4a-SM-2I3GK 60-69 years, male 229.8
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 227.4
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 220.3
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 218.5
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 218.5
GTEX-QDT8-0011-R4A-SM-32PKM 30-39 years, female 212.4
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 210.5
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 202.6
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 201.0
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 199.8
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 195.8
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 194.3
GTEX-N7MS-0011-R4a-SM-2HMKW 60-69 years, male 193.1
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 186.6
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 184.4
GTEX-QMR6-0011-R4A-SM-32PKU 50-59 years, male 182.5
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 181.4
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 178.2
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 174.5
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 169.2
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 161.3
GTEX-15DDE-0011-R4b-SM-7KULI 50-59 years, female 151.1
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 151.1
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 147.7
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 147.4
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 129.8
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 129.4
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 128.8
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 127.0
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 126.9
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 126.0
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 121.7
GTEX-1H2FU-0011-R4a-SM-CL551 60-69 years, female 120.5
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 119.3
GTEX-X4EP-0011-R4B-SM-3P627 60-69 years, female 118.0
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 105.8
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 105.8
GTEX-ZE9C-0011-R4a-SM-4WKH6 60-69 years, male 100.7
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 98.9
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 98.0
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 95.2
GTEX-183WM-0011-R4a-SM-7LG6S 70-79 years, female 95.2
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 90.0
GTEX-145MI-0011-R4b-SM-5PNZH 60-69 years, female 85.1
GTEX-1JN6P-0011-R4a-SM-EZ6MS 60-69 years, male 83.8
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 79.1
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 77.8
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 76.0
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 68.8
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 60.1
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AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 702.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 702.9
FF:10151-102I7 76 years, female 702.9

AMYGDALA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 374.6
Pig sample Sample description nTPM
Amygdala
nTPM: 374.6
Samples: 4

Max nTPM: 625.1
Min nTPM: 229.2
Sample A Female 625.1
Sample B Female 229.2
Sample C Male 294.3
Sample D Male 349.8

AMYGDALA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 805.7
Mouse sample Sample description nTPM
Amygdala
nTPM: 805.7
Samples: 4

Max nTPM: 907.4
Min nTPM: 752.1
Sample A Male 907.4
Sample B Male 771.6
Sample C Female 791.8
Sample D Female 752.1

AMYGDALA - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Read more
Max Expression energy 29.4
Allen experiment id Experiment description Expression energy
Cortical subplate
Expression energy: 29.4
79556674 Antisense, RP_071204_01_C07, Mouse strain C57BL/6J (56 days, male) 34.8
79632309 Antisense, RP_071204_01_C07, Mouse strain C57BL/6J (56 days, male) 29.0
1089 Antisense, RP_Baylor_253988, Mouse strain C57BL/6J (56 days, male) 24.0
1088 Antisense, RP_Baylor_253988, Mouse strain C57BL/6J (56 days, male) 23.1

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