MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:205.2 nTPM
HPA:205.2 nTPM
GTEx:468.3 nTPM
FANTOM5:179.5 Scaled Tags Per Million
Pig:629.9 nTPM
Mouse:233.3 nTPM
Allen mouse:21.5 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 205.2
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 50.7
2411 Female, age 72, unknown 156.0
2219 Male, age 76, both hemispheres 103.2
2666 Male, age 74, left hemisphere 87.0
1827 Male, age 72, unknown 72.7
2828 Female, age 72, unknown 37.1
2019 Male, age 18, unknown 28.1
1870 Female, age 42, unknown 16.7
1833 Male, age 53, unknown 6.5
1830 Male, age 51, unknown 0.0
2586 Male, age 75, left hemisphere 0.0
Dorsal raphe nucleus
nTPM: 133.1
2298 Female, age 72, unknown 267.7
2750 Male, age 76, both hemispheres 158.2
2047 Male, age 72, unknown 150.5
1828 Male, age 53, unknown 89.0
2016 Female, age 72, unknown 0.0
Inferior colliculus
nTPM: 9.0
2097 Female, age 72, unknown 36.0
1848 Female, age 42, unknown 0.0
1890 Male, age 53, unknown 0.0
2849 Male, age 72, unknown 0.0
Median raphe nucleus
nTPM: 205.2
2220 Male, age 76, midline 205.2
Pedunculopontine tegmental nucleus
nTPM: 110.1
2334 Male, age 80, both hemispheres 165.1
1921 Female, age 85, both hemispheres 114.5
2338 Male, age 61, both hemispheres 50.6
Periaquaductal grey, anterior
nTPM: 52.2
1795 Male, age 51, unknown 97.0
1947 Male, age 18, unknown 59.7
2502 Female, age 75, unknown 0.0
Periaquaductal grey, dorsal
nTPM: 5.5
1840 Male, age 53, unknown 10.7
2464 Female, age 72, unknown 6.7
2850 Male, age 76, both hemispheres 4.7
1831 Male, age 72, unknown 0.0
Periaquaductal grey, lateral
nTPM: 37.5
2272 Male, age 74, both hemispheres 112.7
2053 Male, age 18, unknown 0.0
2140 Male, age 76, both hemispheres 0.0
Pretectal area
nTPM: 76.3
1944 Female, age 72, unknown 144.5
2224 Female, age 72, unknown 136.2
1816 Male, age 51, unknown 119.3
2007 Male, age 72, unknown 116.5
1817 Female, age 42, unknown 94.8
2273 Male, age 74, both hemispheres 86.5
2667 Female, age 75, unknown 76.6
1815 Male, age 53, unknown 53.8
2825 Male, age 18, unknown 11.6
2316 Male, age 76, right hemisphere 0.0
2407 Male, age 75, both hemispheres 0.0
Red nucleus
nTPM: 10.9
2584 Male, age 75, left hemisphere 58.8
1821 Female, age 72, unknown 33.9
1954 Female, age 42, unknown 20.0
2785 Male, age 18, unknown 16.7
2823 Male, age 76, right hemisphere 2.3
1865 Male, age 51, unknown 0.0
1904 Male, age 53, unknown 0.0
2227 Male, age 72, unknown 0.0
2503 Female, age 72, unknown 0.0
2588 Male, age 74, left hemisphere 0.0
2725 Female, age 75, unknown 0.0
2769 Male, age 72, unknown 0.0
Substantia nigra
nTPM: 134.7
1916 Female, age 42, unknown 347.7
2241 Male, age 72, unknown 197.6
1851 Male, age 51, unknown 183.3
1941 Male, age 53, unknown 177.3
2409 Female, age 72, unknown 158.2
1889 Female, age 72, unknown 109.2
2699 Male, age 18, unknown 75.2
2590 Female, age 75, unknown 59.6
2665 Male, age 74, both hemispheres 29.1
2583 Male, age 75, right hemisphere 9.5
Superior colliculus
nTPM: 63.7
2668 Female, age 75, unknown 392.6
2087 Female, age 72, unknown 105.0
1796 Male, age 53, unknown 70.3
2261 Male, age 18, unknown 55.1
1895 Male, age 76, right hemisphere 14.2
1839 Male, age 51, unknown 0.0
1913 Female, age 42, unknown 0.0
1995 Male, age 72, unknown 0.0
2587 Male, age 74, left hemisphere 0.0
2664 Male, age 75, both hemispheres 0.0
Ventral tegmental area
nTPM: 147.8
2410 Female, age 72, unknown 262.3
2218 Male, age 76, both hemispheres 257.9
1915 Female, age 42, unknown 188.5
2021 Male, age 53, unknown 71.4
1942 Male, age 51, unknown 65.9
2223 Female, age 72, unknown 40.8

MIDBRAIN - GTEx RNA-seqi
Average nTPM 468.3
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 468.3
Samples: 139

Max nTPM: 2880.4
Min nTPM: 40.1
Std nTPM: 504.6
Median nTPM: 255.1
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 2880.4
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 2441.0
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 2270.8
GTEX-1EMGI-0011-R2b-SM-9OSVS 60-69 years, male 1807.1
GTEX-1LH75-0011-R2b-SM-EYYWQ 50-59 years, female 1633.8
GTEX-1B933-0011-R2b-SM-7IGNM 50-59 years, female 1596.5
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 1589.2
GTEX-15CHQ-0011-R2b-SM-6AJAD 60-69 years, male 1453.6
GTEX-1HB9E-0011-R2b-SM-A96RW 50-59 years, male 1441.4
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 1337.8
GTEX-1399T-0011-R2b-SM-5DUXM 60-69 years, male 1275.7
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 179.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 179.5
FF:10158-103A5 76 years, female 179.5

MIDBRAIN - Pig RNA-seqi
Average nTPM 629.9
Pig sample Sample description nTPM
Midbrain
nTPM: 513.3
Samples: 4

Max nTPM: 806.6
Min nTPM: 352.3
Sample A Female 500.4
Sample B Female 393.8
Sample C Male 806.6
Sample D Male 352.3
Periaqueductal gray
nTPM: 340.8
Samples: 3

Max nTPM: 488.8
Min nTPM: 259.7
Sample B Female 274.0
Sample C Male 488.8
Sample D Male 259.7
Substantia nigra
nTPM: 630.0
Samples: 4

Max nTPM: 1080.1
Min nTPM: 194.0
Sample A Female 1080.1
Sample B Female 400.2
Sample C Male 845.5
Sample D Male 194.0
Superior colliculi
nTPM: 487.1
Samples: 4

Max nTPM: 894.2
Min nTPM: 266.7
Sample A Female 415.5
Sample B Female 266.7
Sample C Male 894.2
Sample D Male 372.0

MIDBRAIN - Mouse RNA-seqi
Average nTPM 233.3
Mouse sample Sample description nTPM
Midbrain
nTPM: 233.3
Samples: 4

Max nTPM: 302.0
Min nTPM: 161.5
Sample A Male 302.0
Sample B Male 209.2
Sample C Female 161.5
Sample D Female 260.4

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 21.5
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 21.5
79556674 Antisense, RP_071204_01_C07, Mouse strain C57BL/6J (56 days, male) 25.3
79632309 Antisense, RP_071204_01_C07, Mouse strain C57BL/6J (56 days, male) 21.6
1089 Antisense, RP_Baylor_253988, Mouse strain C57BL/6J (56 days, male) 17.6
1088 Antisense, RP_Baylor_253988, Mouse strain C57BL/6J (56 days, male) 14.3

Contact

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.