BASAL GANGLIA - Expression summary
Protein expression
Caudatei
h
m
l
n
Glial cells: Not detected
Neuronal cells: Low
Protein profiling
Multiplex tissuei
RNA expressioni
Consensus:18.7 nTPM
HPA:18.7 nTPM
GTEx:23.3 nTPM
FANTOM5:91.9 Scaled Tags Per Million
Pig:21.3 nTPM
Mouse:78.0 nTPM
Allen mouse:3.0 Expression energy

CAUDATE - Antibody stainingi
Antibody HPA038391Antibody HPA038409Antibody CAB032876
Glial cells Not detectedNot detectedMedium
Neuronal cells MediumLowHigh




BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 18.7
Sample id Sample description nTPM
Caudate nucleus
nTPM: 17.5
1857 Female, age 85, left hemisphere 24.3
1854 Male, age 80, left hemisphere 20.9
2846 Female, age 79, unknown 18.1
2290 Female, age 72, unknown 17.8
1781 Male, age 74, unknown 15.6
2289 Male, age 61, right hemisphere 14.8
2288 Male, age 75, left hemisphere 14.5
2481 Female, age 94, left hemisphere 14.2
Claustrum
nTPM: 12.5
2392 Female, age 94, both hemispheres 14.4
2196 Female, age 79, unknown 14.0
2491 Male, age 75, both hemispheres 13.0
2198 Male, age 80, both hemispheres 12.9
2568 Male, age 61, both hemispheres 12.9
1956 Male, age 74, unknown 12.4
2645 Female, age 72, unknown 11.1
2284 Female, age 91, both hemispheres 10.7
2292 Female, age 85, both hemispheres 10.7
Globus pallidus, externus
nTPM: 12.4
2395 Male, age 75, both hemispheres 15.0
1996 Male, age 80, right hemisphere 13.6
2772 Female, age 79, unknown 13.4
2646 Male, age 61, right hemisphere 10.6
2567 Female, age 72, unknown 9.6
Globus pallidus, internus
nTPM: 12.8
2778 Female, age 91, both hemispheres 15.0
2483 Female, age 94, right hemisphere 13.8
2287 Male, age 75, right hemisphere 13.4
1818 Male, age 74, unknown 13.3
2037 Male, age 80, right hemisphere 13.3
2111 Female, age 85, right hemisphere 10.6
2566 Female, age 72, unknown 10.6
Nucleus accumbens
nTPM: 18.7
2824 Male, age 61, right hemisphere 21.9
1856 Female, age 91, right hemisphere 21.7
1806 Female, age 85, left hemisphere 21.2
1783 Male, age 74, unknown 19.8
2698 Female, age 72, unknown 18.1
2286 Male, age 75, left hemisphere 16.6
2391 Female, age 94, left hemisphere 16.6
2732 Male, age 80, right hemisphere 13.4
Nucleus basalis of Meynert
nTPM: 14.6
2393 Male, age 80, right hemisphere 18.8
2484 Female, age 94, left hemisphere 15.4
2821 Male, age 75, both hemispheres 13.1
2569 Male, age 61, both hemispheres 11.0
Nucleus of the diagonal band
nTPM: 14.3
1812 Female, age 91, both hemispheres 15.6
2775 Male, age 80, right hemisphere 14.6
2195 Female, age 85, both hemispheres 13.9
1979 Male, age 74, unknown 13.8
2029 Male, age 61, right hemisphere 13.8
Olfactory tubercle
nTPM: 14.2
2487 Female, age 94, left hemisphere 14.8
2856 Male, age 75, right hemisphere 14.6
1998 Female, age 91, both hemispheres 13.9
1846 Male, age 80, right hemisphere 13.6
Putamen
nTPM: 16.5
1838 Male, age 80, right hemisphere 23.0
1937 Female, age 91, right hemisphere 18.5
2466 Female, age 79, unknown 18.0
1829 Male, age 74, unknown 15.7
2482 Female, age 94, left hemisphere 14.9
2647 Male, age 75, left hemisphere 12.9
2489 Female, age 72, unknown 12.8
Septal nuclei
nTPM: 13.7
1960 Male, age 74, unknown 15.6
2394 Male, age 61, left hemisphere 14.7
2031 Female, age 72, unknown 13.9
2059 Female, age 85, both hemispheres 13.3
2629 Female, age 94, right hemisphere 13.2
2199 Male, age 80, right hemisphere 13.0
2009 Female, age 91, both hemispheres 12.1

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 23.3
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 20.4
Samples: 246

Max nTPM: 42.1
Min nTPM: 10.8
Std nTPM: 5.1
Median nTPM: 19.4
GTEX-14JIY-0011-R5b-SM-62LE7 60-69 years, male 42.1
GTEX-P44H-0011-R5A-SM-2XCEX 40-49 years, male 40.7
GTEX-11DYG-0011-R5a-SM-DO928 60-69 years, male 40.2
GTEX-T2IS-0011-R5A-SM-32QP4 20-29 years, female 38.5
GTEX-17HG3-0011-R5a-SM-7DUEW 30-39 years, female 37.1
GTEX-1EMGI-0011-R5a-SM-CJI2E 60-69 years, male 37.0
GTEX-14JG1-0011-R5a-SM-62LED 40-49 years, male 35.9
GTEX-17EVP-0011-R5b-SM-7DHKW 40-49 years, male 33.8
GTEX-1J1OQ-0011-R5a-SM-D3L8K 40-49 years, female 33.0
GTEX-1AX9I-0011-R5b-SM-793DI 60-69 years, male 30.6
GTEX-16YQH-0011-R5b-SM-7938U 30-39 years, male 30.4
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Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 23.3
Samples: 246

Max nTPM: 50.3
Min nTPM: 9.4
Std nTPM: 6.2
Median nTPM: 23.1
GTEX-1LVAO-0011-R6b-SM-EZ6MX 60-69 years, male 50.3
GTEX-NL3H-0011-R6a-SM-2I3G8 60-69 years, male 45.3
GTEX-QMR6-0011-R6A-SM-32PKP 50-59 years, male 43.0
GTEX-147F4-0011-R6b-SM-5S2UP 50-59 years, male 42.2
GTEX-1EKGG-0011-R6a-SM-CL538 60-69 years, male 39.0
GTEX-1A3MX-0011-R6a-SM-7P8S9 60-69 years, male 36.9
GTEX-1B8L1-0011-R6b-SM-7P8SU 60-69 years, male 36.9
GTEX-1EMGI-0011-R6a-SM-9OSVR 60-69 years, male 36.7
GTEX-11NV4-0011-R6a-SM-57WD5 60-69 years, male 36.0
GTEX-1GZ4I-0011-R6b-SM-9WG77 50-59 years, male 34.1
GTEX-1AX9I-0011-R6a-SM-7P8PK 60-69 years, male 34.0
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Brain - Putamen (basal ganglia)
Average nTPM: 19.3
Samples: 205

Max nTPM: 36.7
Min nTPM: 9.3
Std nTPM: 4.6
Median nTPM: 18.8
GTEX-QDT8-0011-R7A-SM-32PKF 30-39 years, female 36.7
GTEX-1HFI6-0011-R7b-SM-CM2SS 40-49 years, male 35.2
GTEX-T6MN-0011-R7A-SM-32QP5 50-59 years, male 33.2
GTEX-14C5O-0011-R7b-SM-5YYAH 60-69 years, male 31.7
GTEX-1EKGG-0011-R7a-SM-CKZNN 60-69 years, male 31.5
GTEX-11PRG-0011-R7a-SM-DNZZT 50-59 years, male 29.2
GTEX-1LH75-0011-R7a-SM-EXOIF 50-59 years, female 29.0
GTEX-16YQH-0011-R7a-SM-79ON1 30-39 years, male 28.7
GTEX-1H1ZS-0011-R7a-SM-CL54P 70-79 years, male 28.7
GTEX-1EMGI-0011-R7b-SM-9QEH5 60-69 years, male 28.1
GTEX-11DYG-0011-R7b-SM-EXUS6 60-69 years, male 28.0
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BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 91.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 91.9
FF:10164-103B2 76 years, female 91.9
Globus pallidus
Scaled Tags Per Million: 37.1
FF:10175-103C4 60 years, female 41.8
FF:10161-103A8 76 years, female 32.5
Nucleus accumbens
Scaled Tags Per Million: 53.2
FF:10037-101F1 23-56 years, mixed 53.2
Putamen
Scaled Tags Per Million: 75.7
FF:10176-103C5 60 years, female 75.7

BASAL GANGLIA - Pig RNA-seqi
Average nTPM 21.3
Pig sample Sample description nTPM
Caudate
nTPM: 18.9
Samples: 4

Max nTPM: 21.3
Min nTPM: 17.6
Sample A Female 18.4
Sample B Female 17.6
Sample C Male 21.3
Sample D Male 18.3
Putamen
nTPM: 21.3
Samples: 4

Max nTPM: 35.0
Min nTPM: 13.2
Sample A Female 13.2
Sample B Female 19.4
Sample C Male 35.0
Sample D Male 17.5
Septum
nTPM: 12.8
Samples: 4

Max nTPM: 13.7
Min nTPM: 12.1
Sample A Female 13.7
Sample B Female 12.4
Sample C Male 12.1
Sample D Male 12.9
Ventral pallidum
nTPM: 13.7
Samples: 4

Max nTPM: 15.5
Min nTPM: 11.5
Sample A Female 15.5
Sample B Female 15.2
Sample C Male 11.5
Sample D Male 12.7

BASAL GANGLIA - Mouse RNA-seqi
Average nTPM 78.0
Mouse sample Sample description nTPM
Caudate putamen
nTPM: 76.3
Samples: 4

Max nTPM: 83.2
Min nTPM: 67.6
Sample A Male 74.9
Sample B Male 67.6
Sample C Female 83.2
Sample D Female 79.3
Septum
nTPM: 60.0
Samples: 4

Max nTPM: 63.1
Min nTPM: 57.9
Sample A Male 57.9
Sample B Male 60.3
Sample C Female 63.1
Sample D Female 58.6
Ventral forebrain
nTPM: 78.0
Samples: 4

Max nTPM: 83.1
Min nTPM: 74.8
Sample A Male 75.3
Sample B Male 74.8
Sample C Female 83.1
Sample D Female 78.6

BASAL GANGLIA - Allen Mouse ISHi
Max Expression energy 3.0
Allen experiment id Experiment description Expression energy
Striatum
Expression energy: 3.0
70928196 Antisense, RP_050725_01_B11, Mouse strain C57BL/6J (56 days, male) 3.0
Pallidum
Expression energy: 2.8
70928196 Antisense, RP_050725_01_B11, Mouse strain C57BL/6J (56 days, male) 2.8

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The Human Protein Atlas

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