MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:15.0 nTPM
HPA:15.0 nTPM
GTEx:18.8 nTPM
FANTOM5:32.3 Scaled Tags Per Million
Pig:16.2 nTPM
Mouse:109.2 nTPM
Allen mouse:3.3 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 15.0
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 12.3
2019 Male, age 18, unknown 13.8
2411 Female, age 72, unknown 13.6
2219 Male, age 76, both hemispheres 13.5
1827 Male, age 72, unknown 13.4
2828 Female, age 72, unknown 12.3
1833 Male, age 53, unknown 12.1
1870 Female, age 42, unknown 12.0
2666 Male, age 74, left hemisphere 11.5
1830 Male, age 51, unknown 11.1
2586 Male, age 75, left hemisphere 10.0
Dorsal raphe nucleus
nTPM: 13.3
2047 Male, age 72, unknown 14.4
2750 Male, age 76, both hemispheres 13.7
2298 Female, age 72, unknown 13.1
1828 Male, age 53, unknown 12.7
2016 Female, age 72, unknown 12.6
Inferior colliculus
nTPM: 13.0
2097 Female, age 72, unknown 15.9
1890 Male, age 53, unknown 13.0
1848 Female, age 42, unknown 11.7
2849 Male, age 72, unknown 11.4
Median raphe nucleus
nTPM: 15.0
2220 Male, age 76, midline 15.0
Pedunculopontine tegmental nucleus
nTPM: 12.7
1921 Female, age 85, both hemispheres 14.0
2334 Male, age 80, both hemispheres 14.0
2338 Male, age 61, both hemispheres 10.1
Periaquaductal grey, anterior
nTPM: 13.9
1947 Male, age 18, unknown 14.3
2502 Female, age 75, unknown 14.2
1795 Male, age 51, unknown 13.2
Periaquaductal grey, dorsal
nTPM: 12.9
2464 Female, age 72, unknown 13.2
1840 Male, age 53, unknown 13.0
2850 Male, age 76, both hemispheres 12.9
1831 Male, age 72, unknown 12.3
Periaquaductal grey, lateral
nTPM: 11.8
2272 Male, age 74, both hemispheres 12.1
2140 Male, age 76, both hemispheres 11.9
2053 Male, age 18, unknown 11.5
Pretectal area
nTPM: 13.6
1944 Female, age 72, unknown 15.6
1816 Male, age 51, unknown 15.2
1815 Male, age 53, unknown 15.1
2007 Male, age 72, unknown 14.5
1817 Female, age 42, unknown 14.3
2667 Female, age 75, unknown 13.5
2224 Female, age 72, unknown 13.4
2273 Male, age 74, both hemispheres 13.4
2407 Male, age 75, both hemispheres 12.4
2825 Male, age 18, unknown 11.6
2316 Male, age 76, right hemisphere 11.0
Red nucleus
nTPM: 13.0
2503 Female, age 72, unknown 14.4
1821 Female, age 72, unknown 14.3
1954 Female, age 42, unknown 13.6
1865 Male, age 51, unknown 13.5
2725 Female, age 75, unknown 13.4
1904 Male, age 53, unknown 12.8
2823 Male, age 76, right hemisphere 12.7
2584 Male, age 75, left hemisphere 12.5
2785 Male, age 18, unknown 12.5
2227 Male, age 72, unknown 12.4
2588 Male, age 74, left hemisphere 12.3
2769 Male, age 72, unknown 11.6
Substantia nigra
nTPM: 14.1
1916 Female, age 42, unknown 17.7
2241 Male, age 72, unknown 17.0
1851 Male, age 51, unknown 15.5
1889 Female, age 72, unknown 15.0
2699 Male, age 18, unknown 14.5
1941 Male, age 53, unknown 13.3
2665 Male, age 74, both hemispheres 13.0
2590 Female, age 75, unknown 12.6
2583 Male, age 75, right hemisphere 11.8
2409 Female, age 72, unknown 11.0
Superior colliculus
nTPM: 12.7
2087 Female, age 72, unknown 14.5
2668 Female, age 75, unknown 13.4
2261 Male, age 18, unknown 13.3
1796 Male, age 53, unknown 12.9
1913 Female, age 42, unknown 12.9
2587 Male, age 74, left hemisphere 12.9
1895 Male, age 76, right hemisphere 12.5
2664 Male, age 75, both hemispheres 12.1
1995 Male, age 72, unknown 11.5
1839 Male, age 51, unknown 11.4
Ventral tegmental area
nTPM: 14.0
2218 Male, age 76, both hemispheres 15.0
1915 Female, age 42, unknown 14.8
2410 Female, age 72, unknown 14.8
1942 Male, age 51, unknown 14.1
2021 Male, age 53, unknown 13.5
2223 Female, age 72, unknown 12.0

MIDBRAIN - GTEx RNA-seqi
Average nTPM 18.8
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 18.8
Samples: 139

Max nTPM: 32.4
Min nTPM: 9.6
Std nTPM: 4.2
Median nTPM: 18.4
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 32.4
GTEX-15EO6-0011-R2a-SM-6M46R 50-59 years, male 32.2
GTEX-1EMGI-0011-R2b-SM-9OSVS 60-69 years, male 31.4
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 30.2
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 28.8
GTEX-QMR6-0011-R2A-SM-32PKV 50-59 years, male 28.7
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 26.6
GTEX-1F6I4-0011-R2a-SM-CL536 60-69 years, male 26.5
GTEX-13SLW-0011-R2b-SM-5O9C6 70-79 years, male 26.0
GTEX-12ZZX-0011-R2a-SM-5EGLG 40-49 years, female 25.8
GTEX-1GZ2Q-0011-R2b-SM-9OSWO 40-49 years, male 25.7
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 32.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 32.3
FF:10158-103A5 76 years, female 32.3

MIDBRAIN - Pig RNA-seqi
Average nTPM 16.2
Pig sample Sample description nTPM
Midbrain
nTPM: 14.4
Samples: 4

Max nTPM: 18.8
Min nTPM: 12.0
Sample A Female 14.6
Sample B Female 12.2
Sample C Male 18.8
Sample D Male 12.0
Periaqueductal gray
nTPM: 10.6
Samples: 3

Max nTPM: 10.8
Min nTPM: 10.3
Sample B Female 10.3
Sample C Male 10.8
Sample D Male 10.6
Substantia nigra
nTPM: 12.8
Samples: 4

Max nTPM: 16.1
Min nTPM: 9.9
Sample A Female 16.1
Sample B Female 11.5
Sample C Male 13.6
Sample D Male 9.9
Superior colliculi
nTPM: 16.3
Samples: 4

Max nTPM: 20.0
Min nTPM: 12.4
Sample A Female 16.0
Sample B Female 16.6
Sample C Male 20.0
Sample D Male 12.4

MIDBRAIN - Mouse RNA-seqi
Average nTPM 109.2
Mouse sample Sample description nTPM
Midbrain
nTPM: 109.2
Samples: 4

Max nTPM: 112.0
Min nTPM: 104.7
Sample A Male 110.7
Sample B Male 104.7
Sample C Female 112.0
Sample D Female 109.5

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 3.3
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 3.3
70928196 Antisense, RP_050725_01_B11, Mouse strain C57BL/6J (56 days, male) 3.3

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.