MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:210.0 nTPM
HPA:210.0 nTPM
GTEx:330.0 nTPM
FANTOM5:349.2 Scaled Tags Per Million
Mouse:465.8 nTPM
Allen mouse:17.0 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 210.0
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 202.3
2019 Male, age 18, unknown 209.4
1827 Male, age 72, unknown 205.7
2411 Female, age 72, unknown 205.4
1870 Female, age 42, unknown 205.2
1833 Male, age 53, unknown 202.0
2666 Male, age 74, left hemisphere 201.3
2219 Male, age 76, both hemispheres 199.9
1830 Male, age 51, unknown 199.7
2828 Female, age 72, unknown 198.7
2586 Male, age 75, left hemisphere 196.1
Dorsal raphe nucleus
nTPM: 204.3
1828 Male, age 53, unknown 211.9
2298 Female, age 72, unknown 205.4
2016 Female, age 72, unknown 202.1
2750 Male, age 76, both hemispheres 201.5
2047 Male, age 72, unknown 200.7
Inferior colliculus
nTPM: 206.3
1890 Male, age 53, unknown 209.6
2097 Female, age 72, unknown 206.8
2849 Male, age 72, unknown 206.7
1848 Female, age 42, unknown 202.3
Median raphe nucleus
nTPM: 201.7
2220 Male, age 76, midline 201.7
Pedunculopontine tegmental nucleus
nTPM: 203.9
2334 Male, age 80, both hemispheres 210.2
1921 Female, age 85, both hemispheres 204.3
2338 Male, age 61, both hemispheres 197.1
Periaquaductal grey, anterior
nTPM: 203.2
1947 Male, age 18, unknown 204.4
2502 Female, age 75, unknown 204.1
1795 Male, age 51, unknown 201.2
Periaquaductal grey, dorsal
nTPM: 200.9
2850 Male, age 76, both hemispheres 203.6
1840 Male, age 53, unknown 201.9
1831 Male, age 72, unknown 200.8
2464 Female, age 72, unknown 197.4
Periaquaductal grey, lateral
nTPM: 199.7
2053 Male, age 18, unknown 200.4
2272 Male, age 74, both hemispheres 199.9
2140 Male, age 76, both hemispheres 198.7
Pretectal area
nTPM: 206.6
1817 Female, age 42, unknown 217.4
1816 Male, age 51, unknown 215.2
2007 Male, age 72, unknown 214.1
1944 Female, age 72, unknown 213.0
1815 Male, age 53, unknown 210.3
2667 Female, age 75, unknown 205.7
2224 Female, age 72, unknown 201.0
2273 Male, age 74, both hemispheres 200.4
2825 Male, age 18, unknown 199.7
2407 Male, age 75, both hemispheres 198.3
2316 Male, age 76, right hemisphere 197.0
Red nucleus
nTPM: 206.9
1821 Female, age 72, unknown 216.8
2725 Female, age 75, unknown 214.0
2503 Female, age 72, unknown 212.5
2584 Male, age 75, left hemisphere 211.8
1865 Male, age 51, unknown 205.2
2588 Male, age 74, left hemisphere 205.0
1904 Male, age 53, unknown 204.1
2785 Male, age 18, unknown 203.6
2227 Male, age 72, unknown 203.0
2769 Male, age 72, unknown 203.0
2823 Male, age 76, right hemisphere 201.8
1954 Female, age 42, unknown 201.6
Substantia nigra
nTPM: 210.0
1889 Female, age 72, unknown 217.2
2409 Female, age 72, unknown 216.2
1916 Female, age 42, unknown 214.1
2665 Male, age 74, both hemispheres 211.3
2699 Male, age 18, unknown 211.3
1851 Male, age 51, unknown 210.7
2241 Male, age 72, unknown 210.3
1941 Male, age 53, unknown 206.5
2583 Male, age 75, right hemisphere 202.5
2590 Female, age 75, unknown 200.3
Superior colliculus
nTPM: 203.1
2587 Male, age 74, left hemisphere 211.5
1895 Male, age 76, right hemisphere 205.6
2668 Female, age 75, unknown 205.0
2087 Female, age 72, unknown 204.4
1913 Female, age 42, unknown 203.7
1839 Male, age 51, unknown 202.5
2261 Male, age 18, unknown 201.8
1995 Male, age 72, unknown 201.7
1796 Male, age 53, unknown 198.8
2664 Male, age 75, both hemispheres 196.0
Ventral tegmental area
nTPM: 203.9
2410 Female, age 72, unknown 209.5
1915 Female, age 42, unknown 205.9
2223 Female, age 72, unknown 204.6
2218 Male, age 76, both hemispheres 203.2
1942 Male, age 51, unknown 201.5
2021 Male, age 53, unknown 198.8

MIDBRAIN - GTEx RNA-seqi
Average nTPM 330.0
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 330.0
Samples: 139

Max nTPM: 794.4
Min nTPM: 160.9
Std nTPM: 95.2
Median nTPM: 313.1
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 794.4
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 709.2
GTEX-1IGQW-0011-R2b-SM-D4P26 60-69 years, male 584.0
GTEX-11GS4-0011-R2a-SM-DO942 60-69 years, male 565.3
GTEX-1F75B-0011-R2a-SM-ARL8I 50-59 years, male 553.7
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 513.3
GTEX-11EMC-0011-R2b-SM-DO114 60-69 years, female 464.9
GTEX-ZV68-0011-R2a-SM-4YCDK 50-59 years, female 460.4
GTEX-1IY9M-0011-R2a-SM-D4P29 60-69 years, male 454.6
GTEX-131XH-0011-R2b-SM-5DUVY 50-59 years, male 451.2
GTEX-UTHO-0011-R2A-SM-3GIKC 60-69 years, male 449.9
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 349.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 349.2
FF:10158-103A5 76 years, female 349.2

MIDBRAIN - Mouse RNA-seqi
Average nTPM 465.8
Mouse sample Sample description nTPM
Midbrain
nTPM: 465.8
Samples: 4

Max nTPM: 481.2
Min nTPM: 453.2
Sample A Male 481.2
Sample B Male 457.5
Sample C Female 471.2
Sample D Female 453.2

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 17.0
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 17.0
293241 Antisense, RP_040609_01_G11, Mouse strain C57BL/6J (56 days, male) 17.0
323595 Antisense, RP_040609_01_G11, Mouse strain C57BL/6J (56 days, male) 7.9

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The Human Protein Atlas

The Human Protein Atlas project is funded
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