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BRAIN PONS Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA MIDBRAIN
OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
Pons
PONS - Expression summary
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:214.9 nTPM
HPA:214.9 nTPM
FANTOM5:447.7 Scaled Tags Per Million
Allen mouse:10.9 Expression energy

PONS - HPA Brain RNA-seq
Max nTPM 214.9
Sample id Sample description nTPM
Anterior cochlear nucleus, ventral
nTPM: 205.4
2301 Female, age 85, both hemispheres 210.1
2188 Female, age 91, both hemispheres 206.8
2090 Male, age 80, both hemispheres 203.5
1984 Male, age 76, both hemispheres 201.1
Dorsal cochlear nucleus
nTPM: 209.4
2802 Male, age 74, right hemisphere 223.0
2187 Female, age 91, both hemispheres 213.2
2370 Male, age 61, both hemispheres 208.0
2378 Male, age 80, both hemispheres 206.3
2058 Male, age 76, both hemispheres 196.6
Dorsal tegmental nucleus
nTPM: 207.7
2326 Male, age 74, both hemispheres 219.3
2083 Male, age 80, both hemispheres 213.4
1936 Male, age 76, left hemisphere 203.1
2358 Male, age 61, both hemispheres 194.8
Dorsolateral tegmental area
nTPM: 205.9
2654 Male, age 80, both hemispheres 216.5
2751 Female, age 85, both hemispheres 208.9
2360 Male, age 74, both hemispheres 205.5
2141 Male, age 76, both hemispheres 202.2
2337 Male, age 61, both hemispheres 196.4
Kolliker-Fuse nucleus
nTPM: 207.3
2793 Female, age 91, left hemisphere 209.3
2163 Male, age 80, both hemispheres 206.7
2315 Male, age 76, right hemisphere 205.9
Lateral lemniscal nuclei
nTPM: 200.3
2169 Male, age 76, both hemispheres 214.7
2746 Female, age 85, left hemisphere 202.8
2320 Female, age 91, left hemisphere 195.6
2453 Male, age 74, right hemisphere 195.3
2036 Male, age 80, both hemispheres 193.3
Lateral parabrachial nucleus
nTPM: 204.3
2139 Female, age 85, right hemisphere 210.1
2013 Male, age 80, both hemispheres 209.6
2792 Male, age 76, both hemispheres 204.1
2790 Male, age 61, both hemispheres 193.6
Lateral vestibular nucleus
nTPM: 203.9
2311 Male, age 80, both hemispheres 204.5
2184 Male, age 76, both hemispheres 203.3
Locus coeruleus
nTPM: 204.9
2720 Male, age 74, both hemispheres 215.1
2123 Female, age 91, both hemispheres 209.9
2014 Male, age 55, unknown 204.7
2788 Male, age 74, unknown 203.1
2317 Female, age 72, unknown 202.6
2162 Male, age 80, both hemispheres 202.3
1980 Male, age 76, both hemispheres 196.4
Medial olivary nucleus
nTPM: 208.3
1943 Male, age 61, both hemispheres 216.6
2138 Female, age 91, both hemispheres 210.6
2851 Male, age 80, both hemispheres 207.0
1962 Male, age 76, both hemispheres 198.9
Medial parabrachial nucleus
nTPM: 205.8
2170 Female, age 91, both hemispheres 219.0
2854 Male, age 80, both hemispheres 212.2
2786 Male, age 76, both hemispheres 203.3
2463 Female, age 85, right hemisphere 197.7
2156 Male, age 61, both hemispheres 197.0
Medial periolivary nuclei
nTPM: 203.5
2063 Male, age 76, both hemispheres 209.4
2171 Female, age 85, both hemispheres 208.4
2791 Male, age 74, right hemisphere 202.9
2458 Female, age 91, both hemispheres 201.1
2081 Male, age 80, both hemispheres 195.5
Motor facial nucleus
nTPM: 204.6
2697 Female, age 85, both hemispheres 211.3
2365 Male, age 74, right hemisphere 208.5
2062 Male, age 76, both hemispheres 208.3
2126 Male, age 61, both hemispheres 201.7
2795 Female, age 91, both hemispheres 200.0
2327 Male, age 80, both hemispheres 198.1
Motor trigeminal nucleus
nTPM: 202.9
2309 Male, age 76, both hemispheres 206.1
2560 Male, age 74, both hemispheres 205.4
2321 Female, age 91, both hemispheres 205.2
2335 Male, age 61, both hemispheres 202.3
2079 Male, age 80, both hemispheres 195.7
Nuclei of the trapezoid body
nTPM: 205.4
1983 Male, age 76, both hemispheres 213.6
2159 Male, age 61, both hemispheres 212.1
2735 Female, age 85, both hemispheres 203.3
2166 Male, age 80, both hemispheres 200.3
2368 Female, age 91, both hemispheres 197.5
Paramedian reticular nucleus
nTPM: 209.1
2050 Female, age 85, both hemispheres 215.6
2052 Male, age 76, both hemispheres 210.9
2313 Male, age 61, both hemispheres 207.9
2057 Male, age 80, both hemispheres 202.1
Pontine nuclei
nTPM: 207.9
1863 Male, age 55, unknown 218.1
2787 Female, age 85, both hemispheres 213.4
2454 Male, age 74, left hemisphere 207.9
2319 Female, age 91, both hemispheres 207.7
1968 Male, age 76, left hemisphere 206.6
2109 Female, age 72, unknown 206.2
2727 Male, age 61, right hemisphere 202.2
2115 Male, age 80, left hemisphere 201.1
Pontine raphe nucleus
nTPM: 206.3
2853 Male, age 76, midline 206.5
2122 Female, age 85, midline 206.0
Posteroventral cochlear nucleus
nTPM: 207.8
2341 Male, age 80, both hemispheres 214.0
2135 Female, age 91, both hemispheres 212.4
2752 Female, age 85, both hemispheres 208.6
2070 Male, age 76, both hemispheres 202.0
2371 Male, age 61, both hemispheres 202.0
Principal sensory trigeminal nucleus
nTPM: 205.1
2158 Male, age 61, both hemispheres 209.8
2367 Female, age 91, left hemisphere 204.9
2324 Male, age 76, both hemispheres 203.4
2008 Male, age 80, left hemisphere 202.4
Reticular pontine nucleus, caudal
nTPM: 206.2
2559 Male, age 74, both hemispheres 211.8
2092 Male, age 76, both hemispheres 210.2
2457 Female, age 91, both hemispheres 206.4
2332 Male, age 80, right hemisphere 196.5
Reticular pontine nucleus, oral
nTPM: 213.7
2361 Male, age 74, both hemispheres 226.7
1939 Male, age 80, both hemispheres 214.7
2366 Female, age 91, both hemispheres 212.2
2167 Male, age 76, both hemispheres 209.4
2012 Female, age 85, both hemispheres 205.4
Reticulotegmental nucleus
nTPM: 204.2
2452 Male, age 74, both hemispheres 208.3
2322 Female, age 91, both hemispheres 206.7
2325 Male, age 76, both hemispheres 202.9
2333 Male, age 80, both hemispheres 198.8
Spinal trigeminal nucleus, oral
nTPM: 203.5
2164 Male, age 80, both hemispheres 205.2
2737 Female, age 85, both hemispheres 204.8
1978 Male, age 76, both hemispheres 200.6
Subcoeruleus area
nTPM: 207.9
1958 Male, age 80, both hemispheres 215.1
2451 Male, age 74, both hemispheres 212.4
2369 Female, age 85, left hemisphere 207.4
2323 Female, age 91, left hemisphere 204.8
2089 Male, age 76, left hemisphere 199.6
Superior olive
nTPM: 206.3
1875 Female, age 85, both hemispheres 218.5
2020 Male, age 76, both hemispheres 210.3
2364 Male, age 74, right hemisphere 208.2
2561 Female, age 91, both hemispheres 197.4
2329 Male, age 80, right hemisphere 197.1
Superior vestibular nucleus
nTPM: 214.9
2383 Male, age 74, both hemispheres 227.4
2015 Male, age 80, both hemispheres 213.8
2061 Male, age 76, both hemispheres 203.4
Ventral periolivary nuclei
nTPM: 205.3
2023 Male, age 76, both hemispheres 211.5
2165 Male, age 80, both hemispheres 205.5
2794 Female, age 91, left hemisphere 202.9
2130 Female, age 85, both hemispheres 201.5
Ventrolateral tegmental area, A5 NE cell group
nTPM: 204.8
2840 Female, age 85, both hemispheres 216.7
1959 Male, age 76, both hemispheres 209.2
2449 Male, age 74, both hemispheres 203.6
2161 Male, age 80, both hemispheres 202.6
2359 Male, age 61, both hemispheres 199.5
2456 Female, age 91, both hemispheres 197.5

PONS - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 447.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Locus coeruleus
Scaled Tags Per Million: 411.7
FF:10182-103D2 60 years, female 435.7
FF:10165-103B3 76 years, female 387.8
Pons
Scaled Tags Per Million: 447.7
FF:10033-101E6 18-54 years, mixed 447.7

PONS - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

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Max Expression energy 10.9
Allen experiment id Experiment description Expression energy
Pons
Expression energy: 10.9
293241 Antisense, RP_040609_01_G11, Mouse strain C57BL/6J (56 days, male) 10.9
323595 Antisense, RP_040609_01_G11, Mouse strain C57BL/6J (56 days, male) 6.7

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