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TISSUE PRIMARY DATA AMYGDALA Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM ENDOMETRIUM
EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MEDULLA OBLONGATA MIDBRAIN NASOPHARYNX ORAL MUCOSA
OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PONS PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE SMOOTH MUSCLE
SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THALAMUS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA WHITE MATTER
ANTIBODIES
AND
VALIDATION
Dictionary
Tissue proteome
Amygdala
AMYGDALA - Expression summary
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:204.1 nTPM
HPA:204.1 nTPM
GTEx:307.2 nTPM
FANTOM5:331.0 Scaled Tags Per Million
Mouse:339.0 nTPM
Allen mouse:19.5 Expression energy

AMYGDALA - HPA Brain RNA-seq
Max nTPM 204.1
Sample id Sample description nTPM
Amygdala
nTPM: 204.1
2814 Male, age 76, right hemisphere 212.8
2695 Female, age 67, right hemisphere 208.9
2514 Male, age 75, right hemisphere 202.4
1987 Female, age 91, left hemisphere 199.4
2517 Female, age 94, left hemisphere 197.1
Basal amygdala
nTPM: 197.7
2609 Male, age 75, right hemisphere 200.7
2827 Female, age 67, right hemisphere 200.7
1955 Male, age 76, both hemispheres 200.2
2685 Female, age 94, left hemisphere 197.3
2110 Male, age 80, left hemisphere 194.5
2243 Female, age 91, right hemisphere 192.7
Central amygdala
nTPM: 199.8
1905 Male, age 76, both hemispheres 206.4
2826 Female, age 94, left hemisphere 202.0
2515 Male, age 75, right hemisphere 199.2
2701 Female, age 91, right hemisphere 196.5
2239 Male, age 80, left hemisphere 194.8
Corticomedial amygdala
nTPM: 196.2
2428 Male, age 75, right hemisphere 198.9
2829 Male, age 80, left hemisphere 198.3
2429 Female, age 94, left hemisphere 198.2
2240 Male, age 76, both hemispheres 196.8
2242 Female, age 91, right hemisphere 195.7
2535 Female, age 67, right hemisphere 189.6
Lateral amygdala
nTPM: 198.2
1883 Male, age 76, both hemispheres 207.6
2830 Female, age 67, right hemisphere 204.0
2516 Male, age 75, right hemisphere 201.1
2534 Female, age 94, left hemisphere 194.3
2256 Male, age 80, left hemisphere 192.5
2255 Female, age 91, right hemisphere 189.5
Stria terminalis, bed nucleus
nTPM: 194.5
1974 Female, age 91, both hemispheres 199.4
2201 Male, age 74, unknown 196.1
2486 Female, age 94, both hemispheres 188.1

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 307.2
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 307.2
Samples: 152

Max nTPM: 1083.1
Min nTPM: 114.9
Std nTPM: 115.1
Median nTPM: 286.9
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 1083.1
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 758.7
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 711.2
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 633.9
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 574.6
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 561.8
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 522.7
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 514.8
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 500.6
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 477.1
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 442.2
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 437.5
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 401.1
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 399.8
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 399.4
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 399.1
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 392.3
GTEX-145MI-0011-R4b-SM-5PNZH 60-69 years, female 388.6
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 383.1
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 373.6
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 372.7
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 370.8
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 369.9
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 368.9
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 365.8
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 359.0
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 358.7
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 357.6
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 357.0
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 355.9
GTEX-Y8DK-0011-R4A-SM-EXUR1 60-69 years, male 354.6
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 353.9
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 353.3
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 352.3
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 350.3
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 345.9
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 344.0
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 343.9
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 343.5
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 342.1
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 341.1
GTEX-1H2FU-0011-R4a-SM-CL551 60-69 years, female 340.8
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 339.4
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 336.7
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 334.7
GTEX-NL3H-0011-R4a-SM-2I3GK 60-69 years, male 333.1
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 332.4
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 331.8
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 330.6
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 326.0
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 323.9
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 322.0
GTEX-ZE9C-0011-R4a-SM-4WKH6 60-69 years, male 318.2
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 317.9
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 317.5
GTEX-UTHO-0011-R4A-SM-3GIJP 60-69 years, male 317.2
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 317.1
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 316.7
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 315.3
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 312.8
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 309.0
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 308.4
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 305.2
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 304.8
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 304.7
GTEX-1JJEA-0011-R4a-SM-EXUTC 60-69 years, male 302.2
GTEX-1JN6P-0011-R4a-SM-EZ6MS 60-69 years, male 301.6
GTEX-183WM-0011-R4a-SM-7LG6S 70-79 years, female 298.5
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 298.4
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 296.3
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 293.6
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 291.7
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 291.4
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 289.7
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 288.0
GTEX-N7MS-0011-R4a-SM-2HMKW 60-69 years, male 287.7
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 286.1
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 284.8
GTEX-18464-0011-R4a-SM-7LG6T 50-59 years, male 284.2
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 283.6
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 282.7
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 280.8
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 279.3
GTEX-P44H-0011-R4A-SM-2XCEW 40-49 years, male 278.9
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 276.8
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 274.8
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 274.6
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 272.6
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 270.3
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 270.0
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 269.9
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 269.8
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 268.9
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 268.6
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 267.5
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 266.3
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 264.3
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 263.4
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 262.1
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 258.6
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 257.1
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 256.3
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 255.0
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 254.1
GTEX-15DDE-0011-R4b-SM-7KULI 50-59 years, female 253.0
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 250.2
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 250.2
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 249.4
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 249.3
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 248.8
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 247.2
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 245.0
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 244.1
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 242.8
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 240.5
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 239.9
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 239.7
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 237.3
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 236.8
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 236.1
GTEX-T5JC-0011-R4A-SM-32PLT 20-29 years, male 233.2
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 231.9
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 231.2
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 230.9
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 230.1
GTEX-R55E-0011-R4A-SM-2TC5H 20-29 years, male 229.6
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 228.3
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 225.5
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 222.6
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 221.2
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 218.3
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 218.1
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 217.8
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 217.0
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 216.7
GTEX-P44G-0011-R4A-SM-2I3FB 30-39 years, male 213.8
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 210.3
GTEX-QMR6-0011-R4A-SM-32PKU 50-59 years, male 209.1
GTEX-1CB4J-0011-R4b-SM-9WG5P 60-69 years, male 208.4
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 205.4
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 202.5
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 191.2
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 187.0
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 186.9
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 184.0
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 175.4
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 173.7
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 169.6
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 165.3
GTEX-QDT8-0011-R4A-SM-32PKM 30-39 years, female 147.5
GTEX-T6MN-0011-R4A-SM-32QPG 50-59 years, male 118.8
GTEX-X4EP-0011-R4B-SM-3P627 60-69 years, female 114.9
Show allShow less

AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 331.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 331.0
FF:10151-102I7 76 years, female 331.0

AMYGDALA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 339.0
Mouse sample Sample description nTPM
Amygdala
nTPM: 339.0
Samples: 4

Max nTPM: 354.0
Min nTPM: 327.0
Sample A Male 327.0
Sample B Male 333.7
Sample C Female 354.0
Sample D Female 341.3

AMYGDALA - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Read more
Max Expression energy 19.5
Allen experiment id Experiment description Expression energy
Cortical subplate
Expression energy: 19.5
293241 Antisense, RP_040609_01_G11, Mouse strain C57BL/6J (56 days, male) 19.5
323595 Antisense, RP_040609_01_G11, Mouse strain C57BL/6J (56 days, male) 8.8

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