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EEF1A1
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BRAIN AMYGDALA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA MIDBRAIN
OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
Amygdala
AMYGDALA - Expression summary
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:2531.3 nTPM
HPA:2531.3 nTPM
GTEx:3090.8 nTPM
FANTOM5:24.9 Scaled Tags Per Million
Pig:1289.5 nTPM
Mouse:3155.9 nTPM
Allen mouse:32.4 Expression energy

AMYGDALA - HPA Brain RNA-seq
Max nTPM 2531.3
Sample id Sample description nTPM
Amygdala
nTPM: 2531.3
2695 Female, age 67, right hemisphere 2796.9
2514 Male, age 75, right hemisphere 2603.2
1987 Female, age 91, left hemisphere 2513.1
2517 Female, age 94, left hemisphere 2393.8
2814 Male, age 76, right hemisphere 2349.3
Basal amygdala
nTPM: 2303.1
2827 Female, age 67, right hemisphere 2522.6
2609 Male, age 75, right hemisphere 2385.0
2110 Male, age 80, left hemisphere 2341.4
2685 Female, age 94, left hemisphere 2208.6
1955 Male, age 76, both hemispheres 2200.7
2243 Female, age 91, right hemisphere 2160.4
Central amygdala
nTPM: 2446.3
2826 Female, age 94, left hemisphere 2805.4
2515 Male, age 75, right hemisphere 2745.9
1905 Male, age 76, both hemispheres 2281.3
2239 Male, age 80, left hemisphere 2217.8
2701 Female, age 91, right hemisphere 2181.1
Corticomedial amygdala
nTPM: 2300.6
2428 Male, age 75, right hemisphere 2675.9
2829 Male, age 80, left hemisphere 2314.3
2242 Female, age 91, right hemisphere 2260.6
2535 Female, age 67, right hemisphere 2247.1
2240 Male, age 76, both hemispheres 2156.5
2429 Female, age 94, left hemisphere 2149.2
Lateral amygdala
nTPM: 2462.8
2830 Female, age 67, right hemisphere 2766.6
2516 Male, age 75, right hemisphere 2629.0
2534 Female, age 94, left hemisphere 2492.9
2256 Male, age 80, left hemisphere 2410.7
1883 Male, age 76, both hemispheres 2257.5
2255 Female, age 91, right hemisphere 2220.1
Stria terminalis, bed nucleus
nTPM: 2183.1
2201 Male, age 74, unknown 2247.8
1974 Female, age 91, both hemispheres 2176.5
2486 Female, age 94, both hemispheres 2124.9

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 3090.8
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 3090.8
Samples: 152

Max nTPM: 7378.4
Min nTPM: 1517.7
Std nTPM: 924.7
Median nTPM: 2916.7
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 7378.4
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 6392.6
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 6069.9
GTEX-145MI-0011-R4b-SM-5PNZH 60-69 years, female 6024.9
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 5752.7
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 5725.4
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 5030.8
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 4897.0
GTEX-1H2FU-0011-R4a-SM-CL551 60-69 years, female 4869.3
GTEX-15DDE-0011-R4b-SM-7KULI 50-59 years, female 4543.1
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 4509.0
GTEX-N7MS-0011-R4a-SM-2HMKW 60-69 years, male 4479.6
GTEX-183WM-0011-R4a-SM-7LG6S 70-79 years, female 4433.6
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 4375.5
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 4182.8
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 4171.8
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 4154.4
GTEX-1JJEA-0011-R4a-SM-EXUTC 60-69 years, male 4136.0
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 4091.1
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 4042.2
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 3957.6
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 3906.8
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 3904.4
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 3834.9
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 3813.5
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 3796.6
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 3711.0
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 3676.9
GTEX-Y8DK-0011-R4A-SM-EXUR1 60-69 years, male 3626.0
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 3621.7
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 3620.4
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 3604.0
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 3524.4
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 3481.1
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 3471.5
GTEX-NL3H-0011-R4a-SM-2I3GK 60-69 years, male 3428.2
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 3412.4
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 3376.6
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 3347.4
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 3314.0
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 3299.8
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 3288.7
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 3246.4
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 3230.6
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 3204.4
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 3189.4
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 3174.3
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 3128.0
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 3128.0
GTEX-QMR6-0011-R4A-SM-32PKU 50-59 years, male 3115.7
GTEX-P44H-0011-R4A-SM-2XCEW 40-49 years, male 3115.4
GTEX-UTHO-0011-R4A-SM-3GIJP 60-69 years, male 3112.0
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 3097.8
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 3089.9
GTEX-ZE9C-0011-R4a-SM-4WKH6 60-69 years, male 3089.4
GTEX-1CB4J-0011-R4b-SM-9WG5P 60-69 years, male 3076.5
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 3072.0
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 3063.6
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 3059.8
GTEX-18464-0011-R4a-SM-7LG6T 50-59 years, male 3046.0
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 3036.5
GTEX-1JN6P-0011-R4a-SM-EZ6MS 60-69 years, male 3035.5
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 3024.7
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 3016.7
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 3015.2
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 3001.6
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 2995.3
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 2988.4
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 2984.8
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 2984.6
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 2963.9
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 2938.5
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 2936.9
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 2927.5
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 2921.0
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 2920.3
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 2913.2
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 2895.1
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 2893.5
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 2888.1
GTEX-X4EP-0011-R4B-SM-3P627 60-69 years, female 2868.8
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 2838.3
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 2836.7
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 2830.8
GTEX-T5JC-0011-R4A-SM-32PLT 20-29 years, male 2816.7
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 2809.1
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 2802.6
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 2796.4
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 2795.9
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 2789.7
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 2746.4
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 2734.9
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 2720.0
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 2718.1
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 2713.7
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 2692.6
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 2683.4
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 2675.5
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 2675.2
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 2662.7
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 2652.4
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 2641.2
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 2634.7
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 2629.2
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 2600.0
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 2599.8
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 2587.1
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 2564.2
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 2548.9
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 2540.7
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 2523.2
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 2515.8
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 2506.6
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 2503.0
GTEX-QDT8-0011-R4A-SM-32PKM 30-39 years, female 2501.0
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 2500.1
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 2476.6
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 2458.9
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 2456.8
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 2454.6
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 2453.1
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 2420.4
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 2417.5
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 2409.3
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 2385.4
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 2382.2
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 2375.9
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 2372.8
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 2371.4
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 2311.4
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 2281.8
GTEX-R55E-0011-R4A-SM-2TC5H 20-29 years, male 2265.4
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 2248.9
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 2228.9
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 2219.8
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 2216.1
GTEX-T6MN-0011-R4A-SM-32QPG 50-59 years, male 2214.1
GTEX-P44G-0011-R4A-SM-2I3FB 30-39 years, male 2208.5
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 2184.6
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 2170.5
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 2170.3
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 2134.2
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 2132.4
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 2119.3
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 2093.1
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 2072.4
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 2044.2
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 2020.6
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 1966.4
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 1876.9
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 1608.8
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 1517.7
Show allShow less

AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 24.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 24.9
FF:10151-102I7 76 years, female 24.9

AMYGDALA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 1289.5
Pig sample Sample description nTPM
Amygdala
nTPM: 1289.5
Samples: 4

Max nTPM: 1580.3
Min nTPM: 868.9
Sample A Female 1461.4
Sample B Female 1580.3
Sample C Male 1247.5
Sample D Male 868.9

AMYGDALA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 3155.9
Mouse sample Sample description nTPM
Amygdala
nTPM: 3155.9
Samples: 4

Max nTPM: 3246.6
Min nTPM: 3061.5
Sample A Male 3167.4
Sample B Male 3246.6
Sample C Female 3061.5
Sample D Female 3148.0

AMYGDALA - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Read more
Max Expression energy 32.4
Allen experiment id Experiment description Expression energy
Cortical subplate
Expression energy: 32.4
73817934 Antisense, RP_051214_01_A05, Mouse strain C57BL/6J (56 days, male) 32.6
632492 Antisense, RP_040907_01_D12, Mouse strain C57BL/6J (56 days, male) 32.2

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