MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:2572.6 nTPM
HPA:2572.6 nTPM
GTEx:3573.3 nTPM
FANTOM5:22.9 Scaled Tags Per Million
Pig:1903.8 nTPM
Mouse:2766.5 nTPM
Allen mouse:26.6 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 2572.6
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 2458.0
2411 Female, age 72, unknown 2661.5
1870 Female, age 42, unknown 2570.3
2828 Female, age 72, unknown 2531.6
2586 Male, age 75, left hemisphere 2522.2
2666 Male, age 74, left hemisphere 2440.0
1830 Male, age 51, unknown 2435.6
1833 Male, age 53, unknown 2424.6
1827 Male, age 72, unknown 2410.8
2019 Male, age 18, unknown 2407.1
2219 Male, age 76, both hemispheres 2176.7
Dorsal raphe nucleus
nTPM: 2519.5
2016 Female, age 72, unknown 2651.6
2298 Female, age 72, unknown 2632.7
2750 Male, age 76, both hemispheres 2456.6
1828 Male, age 53, unknown 2451.3
2047 Male, age 72, unknown 2405.5
Inferior colliculus
nTPM: 2468.6
2097 Female, age 72, unknown 2533.5
1890 Male, age 53, unknown 2514.6
1848 Female, age 42, unknown 2474.8
2849 Male, age 72, unknown 2351.6
Median raphe nucleus
nTPM: 2349.6
2220 Male, age 76, midline 2349.6
Pedunculopontine tegmental nucleus
nTPM: 2424.7
2338 Male, age 61, both hemispheres 2510.0
2334 Male, age 80, both hemispheres 2509.5
1921 Female, age 85, both hemispheres 2254.7
Periaquaductal grey, anterior
nTPM: 2565.0
2502 Female, age 75, unknown 2788.4
1795 Male, age 51, unknown 2482.3
1947 Male, age 18, unknown 2424.4
Periaquaductal grey, dorsal
nTPM: 2509.4
1840 Male, age 53, unknown 2599.9
1831 Male, age 72, unknown 2552.9
2464 Female, age 72, unknown 2540.9
2850 Male, age 76, both hemispheres 2343.9
Periaquaductal grey, lateral
nTPM: 2497.0
2053 Male, age 18, unknown 2635.4
2140 Male, age 76, both hemispheres 2439.2
2272 Male, age 74, both hemispheres 2416.5
Pretectal area
nTPM: 2386.1
2316 Male, age 76, right hemisphere 2538.7
2825 Male, age 18, unknown 2512.0
2407 Male, age 75, both hemispheres 2503.2
2224 Female, age 72, unknown 2482.8
2273 Male, age 74, both hemispheres 2416.8
1815 Male, age 53, unknown 2389.0
2667 Female, age 75, unknown 2358.7
2007 Male, age 72, unknown 2293.7
1817 Female, age 42, unknown 2289.4
1816 Male, age 51, unknown 2244.1
1944 Female, age 72, unknown 2218.8
Red nucleus
nTPM: 2572.6
2503 Female, age 72, unknown 2886.0
1865 Male, age 51, unknown 2680.8
2227 Male, age 72, unknown 2669.3
2769 Male, age 72, unknown 2662.5
1821 Female, age 72, unknown 2622.4
1904 Male, age 53, unknown 2603.3
2584 Male, age 75, left hemisphere 2522.1
2785 Male, age 18, unknown 2473.3
1954 Female, age 42, unknown 2468.6
2588 Male, age 74, left hemisphere 2451.9
2823 Male, age 76, right hemisphere 2425.5
2725 Female, age 75, unknown 2405.9
Substantia nigra
nTPM: 2459.6
1851 Male, age 51, unknown 2624.6
2590 Female, age 75, unknown 2603.2
2665 Male, age 74, both hemispheres 2576.0
2699 Male, age 18, unknown 2536.6
2583 Male, age 75, right hemisphere 2460.7
2409 Female, age 72, unknown 2449.5
2241 Male, age 72, unknown 2419.6
1916 Female, age 42, unknown 2342.9
1941 Male, age 53, unknown 2294.6
1889 Female, age 72, unknown 2288.6
Superior colliculus
nTPM: 2494.8
1995 Male, age 72, unknown 2692.3
2587 Male, age 74, left hemisphere 2684.1
2664 Male, age 75, both hemispheres 2644.2
1913 Female, age 42, unknown 2589.5
1839 Male, age 51, unknown 2491.5
1796 Male, age 53, unknown 2466.1
2261 Male, age 18, unknown 2390.8
2087 Female, age 72, unknown 2343.3
2668 Female, age 75, unknown 2337.8
1895 Male, age 76, right hemisphere 2308.6
Ventral tegmental area
nTPM: 2543.4
2021 Male, age 53, unknown 2650.6
2410 Female, age 72, unknown 2633.9
2223 Female, age 72, unknown 2567.3
1915 Female, age 42, unknown 2528.5
1942 Male, age 51, unknown 2513.2
2218 Male, age 76, both hemispheres 2367.0

MIDBRAIN - GTEx RNA-seqi
Average nTPM 3573.3
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 3573.3
Samples: 139

Max nTPM: 6481.4
Min nTPM: 1292.9
Std nTPM: 1058.9
Median nTPM: 3463.1
GTEX-1F75B-0011-R2a-SM-ARL8I 50-59 years, male 6481.4
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 6286.8
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 6112.7
GTEX-OHPN-0011-R2A-SM-2I5FB 60-69 years, female 6092.8
GTEX-1IGQW-0011-R2b-SM-D4P26 60-69 years, male 5846.9
GTEX-12WSH-0011-R2a-SM-5GU68 50-59 years, male 5617.3
GTEX-1A8G7-0011-R2a-SM-7IGQI 60-69 years, male 5610.1
GTEX-PWO3-0011-R2A-SM-2S1OX 60-69 years, female 5539.9
GTEX-1JMQK-0011-R2a-SM-EYYXQ 60-69 years, male 5294.4
GTEX-OXRO-0011-R2A-SM-3NB1W 60-69 years, female 5177.2
GTEX-YJ89-0011-R2b-SM-4RGLT 60-69 years, male 5112.5
Show allShow less

MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 22.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 22.9
FF:10158-103A5 76 years, female 22.9

MIDBRAIN - Pig RNA-seqi
Average nTPM 1903.8
Pig sample Sample description nTPM
Midbrain
nTPM: 1751.0
Samples: 4

Max nTPM: 2952.8
Min nTPM: 958.7
Sample A Female 2952.8
Sample B Female 1903.3
Sample C Male 1189.3
Sample D Male 958.7
Periaqueductal gray
nTPM: 1452.1
Samples: 3

Max nTPM: 1629.2
Min nTPM: 1346.9
Sample B Female 1629.2
Sample C Male 1380.2
Sample D Male 1346.9
Substantia nigra
nTPM: 1856.5
Samples: 4

Max nTPM: 2114.8
Min nTPM: 1425.5
Sample A Female 2058.4
Sample B Female 2114.8
Sample C Male 1425.5
Sample D Male 1827.3
Superior colliculi
nTPM: 1903.8
Samples: 4

Max nTPM: 2639.3
Min nTPM: 1446.9
Sample A Female 2056.8
Sample B Female 2639.3
Sample C Male 1446.9
Sample D Male 1472.0

MIDBRAIN - Mouse RNA-seqi
Average nTPM 2766.5
Mouse sample Sample description nTPM
Midbrain
nTPM: 2766.5
Samples: 4

Max nTPM: 2905.2
Min nTPM: 2614.5
Sample A Male 2905.2
Sample B Male 2766.5
Sample C Female 2614.5
Sample D Female 2779.7

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 26.6
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 26.6
632492 Antisense, RP_040907_01_D12, Mouse strain C57BL/6J (56 days, male) 27.0
73817934 Antisense, RP_051214_01_A05, Mouse strain C57BL/6J (56 days, male) 26.2

Contact

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.