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EEF1A1
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BRAIN SPINAL CORD Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA MIDBRAIN
OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
SPINAL CORD - Expression summary
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:2980.6 nTPM
HPA:2980.6 nTPM
GTEx:4285.6 nTPM
FANTOM5:37.7 Scaled Tags Per Million
Pig:2732.8 nTPM

SPINAL CORD - HPA Brain RNA-seq
Max nTPM 2980.6
Sample id Sample description nTPM
Cervical spinal cord, central gray
nTPM: 2575.8
1981 Female, age 72, midline 2833.4
2565 Male, age 75, midline 2747.5
2048 Male, age 55, midline 2551.0
2816 Male, age 47, midline 2407.0
2194 Female, age 79, both hemispheres 2339.9
Cervical spinal cord, dorsal horn
nTPM: 2622.0
2173 Female, age 72, unknown 2996.2
2069 Male, age 47, both hemispheres 2858.9
2296 Male, age 66, both hemispheres 2854.7
1877 Male, age 55, unknown 2551.6
2297 Male, age 75, both hemispheres 2255.3
2721 Male, age 90, both hemispheres 2215.1
Cervical spinal cord, ventral horn
nTPM: 2980.6
2480 Male, age 75, both hemispheres 3557.0
2098 Female, age 72, unknown 3272.7
2809 Male, age 90, both hemispheres 3246.0
2295 Male, age 66, both hemispheres 2915.4
2068 Male, age 55, unknown 2671.1
2820 Female, age 79, both hemispheres 2221.2

SPINAL CORD - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 4285.6
GTEx sample id Sample description nTPM
Brain - Spinal cord (cervical c-1)
Average nTPM: 4285.6
Samples: 159

Max nTPM: 8234.7
Min nTPM: 1836.9
Std nTPM: 1034.5
Median nTPM: 4261.0
GTEX-1A8G7-0011-R9b-SM-7IGQH 60-69 years, male 8234.7
GTEX-1HGF4-0011-R9a-SM-ADEH9 60-69 years, male 7031.8
GTEX-1GN2E-0011-R9b-SM-9WG7F 60-69 years, male 7007.9
GTEX-RU72-0011-R9A-SM-2TF67 50-59 years, female 6487.8
GTEX-13CIG-0011-R9a-SM-5K7VU 50-59 years, male 6381.2
GTEX-1C6VQ-0011-R9a-SM-7SB85 50-59 years, male 6209.1
GTEX-PWO3-0011-R9A-SM-EVR2V 60-69 years, female 6119.7
GTEX-1CB4H-0011-R9a-SM-CKZNL 60-69 years, female 6080.4
GTEX-14E7W-0011-R9a-SM-62LE6 70-79 years, male 6010.8
GTEX-1OJC4-0011-R9a-SM-EZ6N1 50-59 years, female 5891.6
GTEX-131YS-0011-R9b-SM-5EQLY 60-69 years, female 5862.5
GTEX-1H1DG-0011-R9b-SM-ACKVB 70-79 years, male 5788.6
GTEX-1HSMO-0011-R9b-SM-CM2T2 60-69 years, male 5733.5
GTEX-NPJ8-0011-R9a-SM-2YUN5 40-49 years, male 5723.4
GTEX-11WQK-0011-R9b-SM-5BC6N 50-59 years, male 5683.6
GTEX-1HR98-0011-R9b-SM-ARL79 60-69 years, male 5683.1
GTEX-13O1R-0011-R9b-SM-5KM33 60-69 years, male 5670.4
GTEX-1I19N-0011-R9a-SM-CMKHN 70-79 years, male 5582.8
GTEX-ZF28-0011-R9a-SM-4WWDY 60-69 years, male 5560.8
GTEX-Q2AG-0011-R9A-SM-2HMJ6 40-49 years, female 5558.1
GTEX-1IGQW-0011-R9b-SM-D4P25 60-69 years, male 5527.9
GTEX-QVUS-0011-R9A-SM-3GIJA 60-69 years, female 5510.0
GTEX-11ZVC-0011-R9a-SM-57WC5 50-59 years, female 5505.3
GTEX-13PL6-0011-R9b-SM-5O9CH 40-49 years, female 5498.9
GTEX-13FTY-0011-R9b-SM-5KM2U 40-49 years, female 5327.4
GTEX-1H1DF-0011-R9b-SM-CM2RN 40-49 years, female 5324.8
GTEX-T5JC-0011-R9A-SM-32PLV 20-29 years, male 5259.6
GTEX-XLM4-0011-R9A-SM-4AT45 60-69 years, male 5252.6
GTEX-11EMC-0011-R9b-SM-DO921 60-69 years, female 5249.3
GTEX-T6MN-0011-R9A-SM-32QOZ 50-59 years, male 5212.1
GTEX-1CAV2-0011-R9b-SM-9WG5M 40-49 years, female 5165.5
GTEX-1F52S-0011-R9a-SM-9WG62 60-69 years, female 5143.4
GTEX-1CAMQ-0011-R9a-SM-9WG5Z 40-49 years, male 5117.4
GTEX-NL4W-0011-R9a-SM-2I3G1 50-59 years, male 5061.6
GTEX-1EU9M-0011-R9a-SM-9WG61 60-69 years, male 5043.7
GTEX-1EKGG-0011-R9a-SM-CMKFV 60-69 years, male 5001.3
GTEX-1H2FU-0011-R9b-SM-CE6S4 60-69 years, female 4994.2
GTEX-1C6VS-0011-R9b-SM-9WG5W 60-69 years, male 4981.6
GTEX-NPJ7-0011-R9a-SM-2TC5R 60-69 years, female 4972.6
GTEX-11UD2-0011-R9b-SM-DO926 50-59 years, male 4949.0
GTEX-ZAB4-0011-R9a-SM-4SOKG 40-49 years, male 4919.0
GTEX-OXRO-0011-R9A-SM-3NB1X 60-69 years, female 4911.1
GTEX-139T4-0011-R9b-SM-5HL6S 50-59 years, female 4803.9
GTEX-131XW-0011-R9a-SM-5N9EO 50-59 years, female 4799.0
GTEX-16NPV-0011-R9b-SM-79ONF 50-59 years, female 4766.0
GTEX-15DCD-0011-R9b-SM-7KUED 70-79 years, female 4749.8
GTEX-1I1GS-0011-R9b-SM-CMKHF 60-69 years, male 4723.8
GTEX-13PLJ-0011-R9b-SM-5O9DV 60-69 years, female 4719.4
GTEX-ZVZQ-0011-R9a-SM-51MRH 60-69 years, female 4661.7
GTEX-1J8JJ-0011-R9a-SM-ACKVF 60-69 years, female 4660.8
GTEX-13NYB-0011-R9b-SM-5MR5P 40-49 years, male 4651.8
GTEX-1I1HK-0011-R9a-SM-CMKHK 60-69 years, male 4649.6
GTEX-148VJ-0011-R9b-SM-5SI77 70-79 years, male 4645.3
GTEX-1GF9W-0011-R9b-SM-9WG7J 60-69 years, male 4631.8
GTEX-13OW5-0011-R9b-SM-5O9CL 60-69 years, male 4601.8
GTEX-ZE9C-0011-R9a-SM-4WWCY 60-69 years, male 4599.3
GTEX-XMD1-0011-R9A-SM-4AT49 60-69 years, male 4594.8
GTEX-13NZA-0011-R9b-SM-5MR5I 60-69 years, male 4557.6
GTEX-1J1OQ-0011-R9b-SM-ARZMK 40-49 years, female 4536.6
GTEX-1B8L1-0011-R9b-SM-9WG5U 60-69 years, male 4526.3
GTEX-1H3NZ-0011-R9a-SM-ADEH7 60-69 years, male 4524.3
GTEX-1F88F-0011-R9b-SM-9WG7L 60-69 years, female 4516.0
GTEX-1BAJH-0011-R9b-SM-7EPIQ 70-79 years, male 4495.7
GTEX-139UW-0011-R9b-SM-5LZYT 60-69 years, male 4458.5
GTEX-1LSNL-0011-R9b-SM-EYYWK 50-59 years, male 4451.8
GTEX-11DZ1-0011-R9a-SM-DO933 50-59 years, male 4447.8
GTEX-TSE9-0011-R9A-SM-3DB7Q 60-69 years, female 4438.2
GTEX-1GZ2Q-0011-R9a-SM-9WG7A 40-49 years, male 4424.2
GTEX-1I1GV-0011-R9b-SM-ARZLE 60-69 years, male 4400.5
GTEX-YJ89-0011-R9a-SM-4SOK7 60-69 years, male 4378.5
GTEX-1LVA9-0011-R9a-SM-EYYWF 50-59 years, male 4376.4
GTEX-OHPN-0011-R9A-SM-5TDEJ 60-69 years, female 4368.1
GTEX-11ZUS-0011-R9b-SM-5BC76 30-39 years, male 4336.1
GTEX-13NYS-0011-R9b-SM-5MR44 60-69 years, male 4327.4
GTEX-1192X-0011-R9b-SM-DO934 50-59 years, male 4306.7
GTEX-13CZV-0011-R9a-SM-5LZXT 60-69 years, male 4279.6
GTEX-1EH9U-0011-R9b-SM-9WG5T 60-69 years, male 4269.3
GTEX-16Z82-0011-R9a-SM-7DUFA 60-69 years, male 4262.7
GTEX-1A32A-0011-R9b-SM-7MGXD 50-59 years, female 4261.4
GTEX-1KANB-0011-R9b-SM-EZ6MO 50-59 years, male 4261.0
GTEX-14E6C-0011-R9a-SM-6EU33 40-49 years, male 4244.0
GTEX-13PVQ-0011-R9b-SM-5LU3B 50-59 years, male 4169.3
GTEX-1LVAO-0011-R9a-SM-EZ6MY 60-69 years, male 4148.1
GTEX-1MJK2-0011-R9b-SM-EZ6MZ 50-59 years, male 4143.8
GTEX-13QJC-0011-R9b-SM-5PNX3 60-69 years, female 4139.2
GTEX-13S7M-0011-R9a-SM-5O9DW 60-69 years, female 4075.5
GTEX-WL46-0011-R9A-SM-3MJFP 50-59 years, male 4069.5
GTEX-14BIM-0011-R9a-SM-6LLJL 60-69 years, female 4061.9
GTEX-1R46S-0011-R9a-SM-EZ6N7 60-69 years, female 4055.9
GTEX-17EVQ-0011-R9b-SM-79OJY 70-79 years, male 4034.6
GTEX-1H3O1-0011-R9b-SM-CM2SQ 60-69 years, male 4029.4
GTEX-12126-0011-R9b-SM-5BC6P 20-29 years, male 4024.0
GTEX-15CHQ-0011-R9a-SM-6LLHX 60-69 years, male 4006.6
GTEX-12WSH-0011-R9b-SM-5LZUG 50-59 years, male 3987.0
GTEX-13N1W-0011-R9b-SM-5MR4R 70-79 years, male 3984.8
GTEX-11ZTS-0011-R9b-SM-DO93Q 60-69 years, female 3964.6
GTEX-QDT8-0011-R9A-SM-CYPRD 30-39 years, female 3962.0
GTEX-1HBPH-0011-R9a-SM-CMKH3 40-49 years, female 3933.0
GTEX-1EWIQ-0011-R9a-SM-ARL8L 70-79 years, female 3909.2
GTEX-14ABY-0011-R9a-SM-5PNZK 50-59 years, male 3895.7
GTEX-1GF9V-0011-R9a-SM-CL53K 60-69 years, male 3882.7
GTEX-13RTJ-0011-R9a-SM-5Q5AY 60-69 years, male 3834.8
GTEX-1J8EW-0011-R9b-SM-D4P2F 60-69 years, female 3775.5
GTEX-13JUV-0011-R9a-SM-5LZX3 40-49 years, female 3769.7
GTEX-145LU-0011-R9b-SM-5SI66 50-59 years, male 3759.6
GTEX-147GR-0011-R9a-SM-5S2UY 60-69 years, male 3756.7
GTEX-1ICLZ-0011-R9a-SM-ARL7E 60-69 years, male 3755.4
GTEX-1IY9M-0011-R9b-SM-D3L8J 60-69 years, male 3747.3
GTEX-14PN4-0011-R9a-SM-6LLH9 50-59 years, male 3692.8
GTEX-11ONC-0011-R9b-SM-5NQ8J 60-69 years, male 3656.4
GTEX-1HBPM-0011-R9b-SM-ARL7C 60-69 years, female 3646.7
GTEX-1HFI6-0011-R9b-SM-CMKH4 40-49 years, male 3630.1
GTEX-14BIL-0011-R9a-SM-5SI7A 50-59 years, male 3629.7
GTEX-14PJO-0011-R9b-SM-62LE9 60-69 years, male 3613.5
GTEX-15ER7-0011-R9b-SM-6PALF 20-29 years, female 3600.7
GTEX-13N2G-0011-R9b-SM-5MR4E 60-69 years, male 3577.2
GTEX-16XZZ-0011-R9b-SM-7DHKX 60-69 years, male 3564.1
GTEX-1JMLX-0011-R9a-SM-EYYXM 50-59 years, male 3562.9
GTEX-1I1CD-0011-R9a-SM-CMKHB 60-69 years, female 3554.0
GTEX-1GTWX-0011-R9a-SM-ADEH4 60-69 years, male 3543.5
GTEX-13VXU-0011-R9b-SM-5SI73 50-59 years, male 3542.9
GTEX-13X6I-0011-R9b-SM-5PNZJ 60-69 years, male 3540.7
GTEX-1GZ4I-0011-R9b-SM-B2LY8 50-59 years, male 3530.6
GTEX-15G19-0011-R9b-SM-7KUEE 60-69 years, male 3530.3
GTEX-1IDJH-0011-R9a-SM-ADEIN 70-79 years, male 3478.2
GTEX-18464-0011-R9a-SM-731BK 50-59 years, male 3444.4
GTEX-1LB8K-0011-R9a-SM-EZ6MP 50-59 years, male 3427.0
GTEX-15DYW-0011-R9b-SM-6PALB 60-69 years, female 3413.2
GTEX-1B933-0011-R9a-SM-79OOR 50-59 years, female 3391.9
GTEX-1GZHY-0011-R9a-SM-9WG5R 50-59 years, female 3328.3
GTEX-14PJM-0011-R9b-SM-6EU35 50-59 years, female 3300.4
GTEX-1H23P-0011-R9a-SM-CM2T1 60-69 years, male 3284.6
GTEX-14BIN-0011-R9a-SM-5SI76 50-59 years, female 3260.9
GTEX-13OVL-0011-R9a-SM-5P9GX 50-59 years, male 3237.7
GTEX-1RQEC-0011-R9a-SM-EZ6N3 60-69 years, male 3208.1
GTEX-14JIY-0011-R9a-SM-6EU34 60-69 years, male 3205.3
GTEX-12WSC-0011-R9a-SM-5GU4U 50-59 years, male 3195.5
GTEX-13SLX-0011-R9b-SM-5SI6X 50-59 years, female 3176.6
GTEX-13OVJ-0011-R9b-SM-5L3GD 50-59 years, female 3134.4
GTEX-12WSD-0011-R9a-SM-5GU6W 60-69 years, female 3115.4
GTEX-1GN1U-0011-R9b-SM-CMKFW 50-59 years, female 3111.7
GTEX-15EO6-0011-R9a-SM-6PALG 50-59 years, male 3104.5
GTEX-1H1ZS-0011-R9a-SM-CM2SO 70-79 years, male 3015.3
GTEX-13SLW-0011-R9a-SM-5O9BT 70-79 years, male 3009.7
GTEX-QVJO-0011-R9A-SM-2S1QH 60-69 years, female 2990.9
GTEX-1F6I4-0011-R9a-SM-CMKFU 60-69 years, male 2968.1
GTEX-1JJ6O-0011-R9a-SM-EYYXP 60-69 years, male 2949.6
GTEX-11GSP-0011-R9b-SM-5NQ77 60-69 years, female 2941.7
GTEX-YFC4-0011-R9a-SM-4SOK4 40-49 years, female 2914.3
GTEX-14BMV-0011-R9b-SM-5ZZUA 50-59 years, male 2908.0
GTEX-1JN1M-0011-R9a-SM-EZ6MR 60-69 years, female 2855.9
GTEX-1HBPI-0011-R9b-SM-ARL76 50-59 years, male 2855.2
GTEX-13FXS-0011-R9a-SM-5K7UI 50-59 years, male 2764.3
GTEX-15DDE-0011-R9b-SM-6M46U 50-59 years, female 2721.5
GTEX-RNOR-0011-R9A-SM-2TF52 50-59 years, female 2657.8
GTEX-13FLV-0011-R9b-SM-5L3DA 50-59 years, male 2639.8
GTEX-R55E-0011-R9A-SM-2TC6C 20-29 years, male 2467.8
GTEX-1GN73-0011-R9a-SM-CKZO5 60-69 years, male 1860.1
GTEX-1IKJJ-0011-R9a-SM-ARZLI 60-69 years, male 1836.9
Show allShow less

SPINAL CORD - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 37.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Spinal cord
Scaled Tags Per Million: 37.7
FF:10181-103D1 60 years, female 37.7
FF:10159-103A6 76 years, female 37.6

SPINAL CORD - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 2732.8
Pig sample Sample description nTPM
Dorsal spinal cord
nTPM: 2732.8
Samples: 4

Max nTPM: 4187.3
Min nTPM: 1701.2
Sample A Female 1701.2
Sample B Female 3078.5
Sample C Male 4187.3
Sample D Male 1964.1
Ventral spinal cord
nTPM: 2448.1
Samples: 4

Max nTPM: 2699.6
Min nTPM: 1896.4
Sample A Female 1896.4
Sample B Female 2699.6
Sample C Male 2630.9
Sample D Male 2565.4

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