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EIF4A2
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BRAIN AMYGDALA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA MIDBRAIN
OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
Amygdala
AMYGDALA - Expression summary
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:277.5 nTPM
HPA:277.5 nTPM
GTEx:255.2 nTPM
FANTOM5:560.3 Scaled Tags Per Million
Pig:340.8 nTPM
Mouse:618.1 nTPM
Allen mouse:28.7 Expression energy

AMYGDALA - HPA Brain RNA-seq
Max nTPM 277.5
Sample id Sample description nTPM
Amygdala
nTPM: 250.8
2514 Male, age 75, right hemisphere 268.2
2814 Male, age 76, right hemisphere 252.7
1987 Female, age 91, left hemisphere 246.8
2517 Female, age 94, left hemisphere 246.3
2695 Female, age 67, right hemisphere 240.0
Basal amygdala
nTPM: 231.5
2609 Male, age 75, right hemisphere 243.4
2243 Female, age 91, right hemisphere 239.6
2110 Male, age 80, left hemisphere 236.9
1955 Male, age 76, both hemispheres 232.1
2685 Female, age 94, left hemisphere 226.1
2827 Female, age 67, right hemisphere 211.0
Central amygdala
nTPM: 241.5
2515 Male, age 75, right hemisphere 250.0
2826 Female, age 94, left hemisphere 247.4
1905 Male, age 76, both hemispheres 244.0
2239 Male, age 80, left hemisphere 237.0
2701 Female, age 91, right hemisphere 228.9
Corticomedial amygdala
nTPM: 243.2
2428 Male, age 75, right hemisphere 254.7
2829 Male, age 80, left hemisphere 250.9
2429 Female, age 94, left hemisphere 249.5
2242 Female, age 91, right hemisphere 246.1
2240 Male, age 76, both hemispheres 241.5
2535 Female, age 67, right hemisphere 216.7
Lateral amygdala
nTPM: 232.1
2516 Male, age 75, right hemisphere 256.0
2534 Female, age 94, left hemisphere 249.8
1883 Male, age 76, both hemispheres 238.8
2255 Female, age 91, right hemisphere 219.4
2256 Male, age 80, left hemisphere 216.3
2830 Female, age 67, right hemisphere 212.2
Stria terminalis, bed nucleus
nTPM: 277.5
1974 Female, age 91, both hemispheres 322.5
2486 Female, age 94, both hemispheres 263.0
2201 Male, age 74, unknown 246.9

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 255.2
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 255.2
Samples: 152

Max nTPM: 687.3
Min nTPM: 45.2
Std nTPM: 100.2
Median nTPM: 235.6
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 687.3
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 539.9
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 496.6
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 479.8
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 476.6
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 476.2
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 475.6
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 447.0
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 446.2
GTEX-R55E-0011-R4A-SM-2TC5H 20-29 years, male 433.4
GTEX-NL3H-0011-R4a-SM-2I3GK 60-69 years, male 388.7
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 379.0
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 378.8
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 378.3
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 377.1
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 376.4
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 371.1
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 370.6
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 367.9
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 363.3
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 363.1
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 359.4
GTEX-1H2FU-0011-R4a-SM-CL551 60-69 years, female 354.6
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 352.0
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 351.9
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 351.7
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 347.5
GTEX-15DDE-0011-R4b-SM-7KULI 50-59 years, female 344.8
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 334.1
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 333.7
GTEX-UTHO-0011-R4A-SM-3GIJP 60-69 years, male 330.3
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 326.7
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 325.3
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 325.2
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 322.8
GTEX-T5JC-0011-R4A-SM-32PLT 20-29 years, male 322.3
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 320.1
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 319.9
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 319.7
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 319.1
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 314.9
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 311.0
GTEX-P44G-0011-R4A-SM-2I3FB 30-39 years, male 310.3
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 309.3
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 308.0
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 306.9
GTEX-P44H-0011-R4A-SM-2XCEW 40-49 years, male 306.3
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 303.7
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 299.1
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 296.7
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 294.8
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 292.5
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 291.0
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 290.5
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 287.1
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 281.8
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 281.5
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 280.8
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 276.8
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 272.8
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 268.9
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 268.4
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 265.3
GTEX-T6MN-0011-R4A-SM-32QPG 50-59 years, male 261.8
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 259.2
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 258.1
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 254.6
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 243.6
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 242.9
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 242.4
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 242.0
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 241.3
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 241.1
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 240.3
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 240.2
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 235.6
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 235.6
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 232.1
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 229.6
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 227.4
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 227.2
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 225.7
GTEX-QDT8-0011-R4A-SM-32PKM 30-39 years, female 225.3
GTEX-N7MS-0011-R4a-SM-2HMKW 60-69 years, male 223.9
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 222.5
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 221.4
GTEX-145MI-0011-R4b-SM-5PNZH 60-69 years, female 220.7
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 219.8
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 219.6
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 218.3
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 217.0
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 215.7
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 214.1
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 211.8
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 211.0
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 208.3
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 207.2
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 206.8
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 206.0
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 204.8
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 203.3
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 201.4
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 200.1
GTEX-Y8DK-0011-R4A-SM-EXUR1 60-69 years, male 197.8
GTEX-QMR6-0011-R4A-SM-32PKU 50-59 years, male 197.5
GTEX-18464-0011-R4a-SM-7LG6T 50-59 years, male 196.0
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 195.4
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 189.9
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 189.0
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 187.8
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 187.7
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 187.4
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 185.4
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 184.1
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 178.5
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 178.4
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 174.5
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 172.3
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 170.2
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 166.0
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 164.9
GTEX-183WM-0011-R4a-SM-7LG6S 70-79 years, female 163.7
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 163.7
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 162.6
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 160.4
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 159.8
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 157.7
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 157.5
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 155.9
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 155.2
GTEX-1JJEA-0011-R4a-SM-EXUTC 60-69 years, male 154.2
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 153.6
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 151.8
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 149.4
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 147.0
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 147.0
GTEX-ZE9C-0011-R4a-SM-4WKH6 60-69 years, male 146.7
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 144.8
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 138.7
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 137.7
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 136.9
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 135.6
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 130.6
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 128.1
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 119.4
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 117.1
GTEX-X4EP-0011-R4B-SM-3P627 60-69 years, female 117.0
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 116.8
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 114.3
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 104.6
GTEX-1JN6P-0011-R4a-SM-EZ6MS 60-69 years, male 104.3
GTEX-1CB4J-0011-R4b-SM-9WG5P 60-69 years, male 45.2
Show allShow less

AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 560.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 560.3
FF:10151-102I7 76 years, female 560.3

AMYGDALA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 340.8
Pig sample Sample description nTPM
Amygdala
nTPM: 340.8
Samples: 4

Max nTPM: 460.6
Min nTPM: 254.4
Sample A Female 460.6
Sample B Female 343.1
Sample C Male 254.4
Sample D Male 304.9

AMYGDALA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 618.1
Mouse sample Sample description nTPM
Amygdala
nTPM: 618.2
Samples: 4

Max nTPM: 670.8
Min nTPM: 530.4
Sample A Male 670.8
Sample B Male 658.7
Sample C Female 530.4
Sample D Female 612.7

AMYGDALA - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Read more
Max Expression energy 28.7
Allen experiment id Experiment description Expression energy
Cortical subplate
Expression energy: 28.7
71381013 Antisense, RP_050428_02_F12, Mouse strain C57BL/6J (56 days, male) 28.7

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