MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:254.5 nTPM
HPA:254.5 nTPM
GTEx:202.1 nTPM
FANTOM5:399.8 Scaled Tags Per Million
Pig:522.5 nTPM
Mouse:847.3 nTPM
Allen mouse:22.3 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 254.5
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 231.8
1827 Male, age 72, unknown 247.6
2019 Male, age 18, unknown 242.5
2411 Female, age 72, unknown 242.3
1870 Female, age 42, unknown 240.9
2219 Male, age 76, both hemispheres 236.1
2666 Male, age 74, left hemisphere 229.0
1833 Male, age 53, unknown 224.0
2586 Male, age 75, left hemisphere 221.8
1830 Male, age 51, unknown 221.2
2828 Female, age 72, unknown 212.7
Dorsal raphe nucleus
nTPM: 234.7
2298 Female, age 72, unknown 263.6
2047 Male, age 72, unknown 234.6
1828 Male, age 53, unknown 229.5
2750 Male, age 76, both hemispheres 227.2
2016 Female, age 72, unknown 218.4
Inferior colliculus
nTPM: 254.1
2097 Female, age 72, unknown 274.4
1848 Female, age 42, unknown 248.5
1890 Male, age 53, unknown 247.7
2849 Male, age 72, unknown 246.0
Median raphe nucleus
nTPM: 254.5
2220 Male, age 76, midline 254.5
Pedunculopontine tegmental nucleus
nTPM: 250.2
1921 Female, age 85, both hemispheres 256.4
2334 Male, age 80, both hemispheres 251.3
2338 Male, age 61, both hemispheres 243.0
Periaquaductal grey, anterior
nTPM: 248.4
1947 Male, age 18, unknown 254.3
2502 Female, age 75, unknown 251.4
1795 Male, age 51, unknown 239.5
Periaquaductal grey, dorsal
nTPM: 236.5
1840 Male, age 53, unknown 248.3
2464 Female, age 72, unknown 234.2
1831 Male, age 72, unknown 232.8
2850 Male, age 76, both hemispheres 230.9
Periaquaductal grey, lateral
nTPM: 229.6
2053 Male, age 18, unknown 234.4
2272 Male, age 74, both hemispheres 231.4
2140 Male, age 76, both hemispheres 223.2
Pretectal area
nTPM: 249.1
1816 Male, age 51, unknown 271.2
2007 Male, age 72, unknown 266.1
1817 Female, age 42, unknown 265.0
1944 Female, age 72, unknown 260.5
2224 Female, age 72, unknown 260.1
1815 Male, age 53, unknown 245.7
2667 Female, age 75, unknown 244.9
2825 Male, age 18, unknown 238.7
2273 Male, age 74, both hemispheres 233.2
2407 Male, age 75, both hemispheres 227.4
2316 Male, age 76, right hemisphere 226.8
Red nucleus
nTPM: 231.9
1821 Female, age 72, unknown 264.4
2725 Female, age 75, unknown 242.8
2785 Male, age 18, unknown 236.9
1865 Male, age 51, unknown 233.5
1954 Female, age 42, unknown 233.0
2227 Male, age 72, unknown 228.0
2503 Female, age 72, unknown 227.3
2769 Male, age 72, unknown 226.9
1904 Male, age 53, unknown 226.1
2584 Male, age 75, left hemisphere 224.2
2588 Male, age 74, left hemisphere 220.7
2823 Male, age 76, right hemisphere 218.6
Substantia nigra
nTPM: 236.5
1889 Female, age 72, unknown 260.8
1941 Male, age 53, unknown 247.9
2241 Male, age 72, unknown 247.7
2409 Female, age 72, unknown 239.3
2665 Male, age 74, both hemispheres 237.6
1916 Female, age 42, unknown 233.6
1851 Male, age 51, unknown 232.7
2590 Female, age 75, unknown 229.9
2583 Male, age 75, right hemisphere 224.8
2699 Male, age 18, unknown 210.4
Superior colliculus
nTPM: 236.0
1895 Male, age 76, right hemisphere 254.5
2587 Male, age 74, left hemisphere 246.8
2261 Male, age 18, unknown 246.3
1796 Male, age 53, unknown 246.1
1839 Male, age 51, unknown 239.7
2087 Female, age 72, unknown 237.4
2668 Female, age 75, unknown 229.1
2664 Male, age 75, both hemispheres 223.3
1913 Female, age 42, unknown 223.2
1995 Male, age 72, unknown 213.2
Ventral tegmental area
nTPM: 235.8
2223 Female, age 72, unknown 243.2
2410 Female, age 72, unknown 240.3
1915 Female, age 42, unknown 239.5
2218 Male, age 76, both hemispheres 233.3
1942 Male, age 51, unknown 232.0
2021 Male, age 53, unknown 226.7

MIDBRAIN - GTEx RNA-seqi
Average nTPM 202.1
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 202.1
Samples: 139

Max nTPM: 694.6
Min nTPM: 90.8
Std nTPM: 86.1
Median nTPM: 184.2
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 694.6
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 556.6
GTEX-11DZ1-0011-R2a-SM-DNZZM 50-59 years, male 522.6
GTEX-QDT8-0011-R2A-SM-32PKQ 30-39 years, female 416.7
GTEX-1HT8W-0011-R2a-SM-CMKH9 30-39 years, male 401.3
GTEX-N7MS-0011-R2a-SM-2HML6 60-69 years, male 363.6
GTEX-1HFI6-0011-R2a-SM-CMKH5 40-49 years, male 360.8
GTEX-1EMGI-0011-R2b-SM-9OSVS 60-69 years, male 328.6
GTEX-12WSH-0011-R2a-SM-5GU68 50-59 years, male 324.5
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 316.2
GTEX-13PDP-0011-R2b-SM-5O9DH 60-69 years, male 316.0
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 399.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 399.8
FF:10158-103A5 76 years, female 399.8

MIDBRAIN - Pig RNA-seqi
Average nTPM 522.5
Pig sample Sample description nTPM
Midbrain
nTPM: 476.6
Samples: 4

Max nTPM: 545.1
Min nTPM: 392.9
Sample A Female 448.9
Sample B Female 392.9
Sample C Male 545.1
Sample D Male 519.3
Periaqueductal gray
nTPM: 350.5
Samples: 3

Max nTPM: 393.6
Min nTPM: 327.2
Sample B Female 330.7
Sample C Male 393.6
Sample D Male 327.2
Substantia nigra
nTPM: 396.5
Samples: 4

Max nTPM: 585.5
Min nTPM: 245.1
Sample A Female 585.5
Sample B Female 365.6
Sample C Male 389.9
Sample D Male 245.1
Superior colliculi
nTPM: 522.5
Samples: 4

Max nTPM: 613.4
Min nTPM: 439.2
Sample A Female 613.4
Sample B Female 439.2
Sample C Male 565.9
Sample D Male 471.4

MIDBRAIN - Mouse RNA-seqi
Average nTPM 847.3
Mouse sample Sample description nTPM
Midbrain
nTPM: 847.4
Samples: 4

Max nTPM: 859.3
Min nTPM: 838.1
Sample A Male 843.9
Sample B Male 859.3
Sample C Female 838.1
Sample D Female 848.1

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 22.3
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 22.3
71381013 Antisense, RP_050428_02_F12, Mouse strain C57BL/6J (56 days, male) 22.3

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.