MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:48.0 nTPM
HPA:48.0 nTPM
GTEx:155.8 nTPM
FANTOM5:89.7 Scaled Tags Per Million
Pig:22.7 nTPM
Mouse:26.2 nTPM
Allen mouse:3.5 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 48.0
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 47.8
2666 Male, age 74, left hemisphere 54.7
2586 Male, age 75, left hemisphere 51.6
2828 Female, age 72, unknown 48.4
1827 Male, age 72, unknown 48.2
1870 Female, age 42, unknown 47.5
1833 Male, age 53, unknown 47.0
2411 Female, age 72, unknown 46.7
1830 Male, age 51, unknown 46.0
2219 Male, age 76, both hemispheres 44.6
2019 Male, age 18, unknown 43.0
Dorsal raphe nucleus
nTPM: 44.6
1828 Male, age 53, unknown 45.7
2047 Male, age 72, unknown 45.1
2750 Male, age 76, both hemispheres 44.8
2016 Female, age 72, unknown 44.7
2298 Female, age 72, unknown 42.9
Inferior colliculus
nTPM: 45.7
2849 Male, age 72, unknown 49.7
1890 Male, age 53, unknown 44.9
1848 Female, age 42, unknown 44.8
2097 Female, age 72, unknown 43.4
Median raphe nucleus
nTPM: 46.5
2220 Male, age 76, midline 46.5
Pedunculopontine tegmental nucleus
nTPM: 44.7
2334 Male, age 80, both hemispheres 46.5
1921 Female, age 85, both hemispheres 44.2
2338 Male, age 61, both hemispheres 43.5
Periaquaductal grey, anterior
nTPM: 45.1
1947 Male, age 18, unknown 45.5
1795 Male, age 51, unknown 45.1
2502 Female, age 75, unknown 44.7
Periaquaductal grey, dorsal
nTPM: 45.2
1840 Male, age 53, unknown 47.2
1831 Male, age 72, unknown 44.8
2464 Female, age 72, unknown 44.8
2850 Male, age 76, both hemispheres 44.1
Periaquaductal grey, lateral
nTPM: 42.7
2053 Male, age 18, unknown 45.3
2140 Male, age 76, both hemispheres 42.7
2272 Male, age 74, both hemispheres 40.1
Pretectal area
nTPM: 45.1
2825 Male, age 18, unknown 48.8
1816 Male, age 51, unknown 47.5
1815 Male, age 53, unknown 47.3
1817 Female, age 42, unknown 46.7
2407 Male, age 75, both hemispheres 46.7
2007 Male, age 72, unknown 45.6
1944 Female, age 72, unknown 44.9
2316 Male, age 76, right hemisphere 43.0
2667 Female, age 75, unknown 42.8
2224 Female, age 72, unknown 42.4
2273 Male, age 74, both hemispheres 40.7
Red nucleus
nTPM: 48.0
2588 Male, age 74, left hemisphere 54.8
2725 Female, age 75, unknown 51.5
2503 Female, age 72, unknown 50.6
2584 Male, age 75, left hemisphere 49.6
1821 Female, age 72, unknown 47.6
2769 Male, age 72, unknown 46.7
2823 Male, age 76, right hemisphere 46.7
1954 Female, age 42, unknown 46.6
2227 Male, age 72, unknown 46.5
1904 Male, age 53, unknown 45.8
1865 Male, age 51, unknown 45.7
2785 Male, age 18, unknown 44.4
Substantia nigra
nTPM: 47.4
2665 Male, age 74, both hemispheres 50.8
2699 Male, age 18, unknown 49.8
1916 Female, age 42, unknown 49.5
1851 Male, age 51, unknown 47.8
2583 Male, age 75, right hemisphere 47.2
1889 Female, age 72, unknown 46.4
2590 Female, age 75, unknown 46.1
1941 Male, age 53, unknown 45.8
2241 Male, age 72, unknown 45.5
2409 Female, age 72, unknown 45.2
Superior colliculus
nTPM: 46.0
2664 Male, age 75, both hemispheres 49.5
2587 Male, age 74, left hemisphere 48.0
2668 Female, age 75, unknown 46.9
1839 Male, age 51, unknown 46.8
1796 Male, age 53, unknown 45.7
1995 Male, age 72, unknown 44.8
2261 Male, age 18, unknown 44.8
1895 Male, age 76, right hemisphere 44.6
2087 Female, age 72, unknown 44.6
1913 Female, age 42, unknown 44.5
Ventral tegmental area
nTPM: 46.1
1915 Female, age 42, unknown 48.0
2410 Female, age 72, unknown 46.2
1942 Male, age 51, unknown 45.7
2021 Male, age 53, unknown 45.6
2218 Male, age 76, both hemispheres 45.6
2223 Female, age 72, unknown 45.6

MIDBRAIN - GTEx RNA-seqi
Average nTPM 155.8
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 155.8
Samples: 139

Max nTPM: 351.5
Min nTPM: 87.9
Std nTPM: 51.5
Median nTPM: 145.2
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 351.5
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 334.2
GTEX-12WSD-0011-R2a-SM-5LZWB 60-69 years, female 311.1
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 293.8
GTEX-139TS-0011-R2b-SM-5J1MX 60-69 years, male 281.5
GTEX-YJ89-0011-R2b-SM-4RGLT 60-69 years, male 267.6
GTEX-ZDXO-0011-R2b-SM-4WKFG 60-69 years, male 263.8
GTEX-OXRO-0011-R2A-SM-3NB1W 60-69 years, female 252.3
GTEX-1A8G7-0011-R2a-SM-7IGQI 60-69 years, male 240.5
GTEX-ZV68-0011-R2a-SM-4YCDK 50-59 years, female 238.1
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 237.4
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 89.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 89.7
FF:10158-103A5 76 years, female 89.7

MIDBRAIN - Pig RNA-seqi
Average nTPM 22.7
Pig sample Sample description nTPM
Midbrain
nTPM: 21.0
Samples: 4

Max nTPM: 23.7
Min nTPM: 16.8
Sample A Female 16.8
Sample B Female 22.6
Sample C Male 20.8
Sample D Male 23.7
Periaqueductal gray
nTPM: 21.9
Samples: 3

Max nTPM: 24.8
Min nTPM: 18.9
Sample B Female 21.9
Sample C Male 24.8
Sample D Male 18.9
Substantia nigra
nTPM: 21.2
Samples: 4

Max nTPM: 30.8
Min nTPM: 11.7
Sample A Female 30.8
Sample B Female 17.6
Sample C Male 24.7
Sample D Male 11.7
Superior colliculi
nTPM: 22.7
Samples: 4

Max nTPM: 29.8
Min nTPM: 17.8
Sample A Female 29.8
Sample B Female 17.8
Sample C Male 20.5
Sample D Male 22.7

MIDBRAIN - Mouse RNA-seqi
Average nTPM 26.2
Mouse sample Sample description nTPM
Midbrain
nTPM: 26.2
Samples: 4

Max nTPM: 27.4
Min nTPM: 25.2
Sample A Male 27.4
Sample B Male 26.5
Sample C Female 25.2
Sample D Female 25.7

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 3.5
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 3.5
69113632 Antisense, RP_050316_02_E01, Mouse strain C57BL/6J (56 days, male) 3.5

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.