MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:837.4 nTPM
HPA:837.4 nTPM
GTEx:715.2 nTPM
FANTOM5:1192.2 Scaled Tags Per Million
Pig:383.4 nTPM
Mouse:505.0 nTPM
Allen mouse:5.0 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 837.4
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 764.0
2586 Male, age 75, left hemisphere 848.1
2828 Female, age 72, unknown 839.4
1870 Female, age 42, unknown 790.2
1833 Male, age 53, unknown 789.6
1830 Male, age 51, unknown 775.3
2411 Female, age 72, unknown 764.9
2666 Male, age 74, left hemisphere 752.1
2019 Male, age 18, unknown 736.7
1827 Male, age 72, unknown 720.6
2219 Male, age 76, both hemispheres 623.3
Dorsal raphe nucleus
nTPM: 693.9
2016 Female, age 72, unknown 756.6
1828 Male, age 53, unknown 723.8
2750 Male, age 76, both hemispheres 692.3
2047 Male, age 72, unknown 658.0
2298 Female, age 72, unknown 638.9
Inferior colliculus
nTPM: 744.0
2849 Male, age 72, unknown 791.3
1848 Female, age 42, unknown 769.3
1890 Male, age 53, unknown 714.8
2097 Female, age 72, unknown 700.7
Median raphe nucleus
nTPM: 592.5
2220 Male, age 76, midline 592.5
Pedunculopontine tegmental nucleus
nTPM: 628.7
1921 Female, age 85, both hemispheres 661.5
2334 Male, age 80, both hemispheres 653.7
2338 Male, age 61, both hemispheres 570.8
Periaquaductal grey, anterior
nTPM: 702.2
2502 Female, age 75, unknown 780.5
1947 Male, age 18, unknown 684.7
1795 Male, age 51, unknown 641.3
Periaquaductal grey, dorsal
nTPM: 715.9
2464 Female, age 72, unknown 768.5
1840 Male, age 53, unknown 724.7
2850 Male, age 76, both hemispheres 703.6
1831 Male, age 72, unknown 666.9
Periaquaductal grey, lateral
nTPM: 691.7
2053 Male, age 18, unknown 748.0
2140 Male, age 76, both hemispheres 718.7
2272 Male, age 74, both hemispheres 608.4
Pretectal area
nTPM: 697.1
2316 Male, age 76, right hemisphere 764.6
1815 Male, age 53, unknown 747.3
2667 Female, age 75, unknown 738.6
1817 Female, age 42, unknown 720.6
2407 Male, age 75, both hemispheres 719.0
2825 Male, age 18, unknown 717.2
1944 Female, age 72, unknown 681.1
2007 Male, age 72, unknown 660.7
2273 Male, age 74, both hemispheres 647.4
1816 Male, age 51, unknown 646.3
2224 Female, age 72, unknown 624.9
Red nucleus
nTPM: 837.4
1821 Female, age 72, unknown 917.3
1865 Male, age 51, unknown 897.8
2769 Male, age 72, unknown 891.5
1904 Male, age 53, unknown 881.9
1954 Female, age 42, unknown 872.7
2503 Female, age 72, unknown 864.9
2227 Male, age 72, unknown 864.8
2823 Male, age 76, right hemisphere 828.9
2588 Male, age 74, left hemisphere 826.8
2785 Male, age 18, unknown 776.1
2725 Female, age 75, unknown 728.6
2584 Male, age 75, left hemisphere 697.5
Substantia nigra
nTPM: 708.2
2699 Male, age 18, unknown 800.8
1851 Male, age 51, unknown 760.0
2409 Female, age 72, unknown 736.0
2583 Male, age 75, right hemisphere 716.6
1889 Female, age 72, unknown 716.0
2590 Female, age 75, unknown 691.7
1916 Female, age 42, unknown 687.2
2241 Male, age 72, unknown 673.1
2665 Male, age 74, both hemispheres 658.9
1941 Male, age 53, unknown 642.2
Superior colliculus
nTPM: 762.1
1995 Male, age 72, unknown 875.6
2664 Male, age 75, both hemispheres 848.8
1913 Female, age 42, unknown 823.9
1839 Male, age 51, unknown 780.5
1895 Male, age 76, right hemisphere 767.4
2587 Male, age 74, left hemisphere 748.9
2668 Female, age 75, unknown 728.0
1796 Male, age 53, unknown 710.3
2087 Female, age 72, unknown 678.8
2261 Male, age 18, unknown 659.0
Ventral tegmental area
nTPM: 691.7
2410 Female, age 72, unknown 804.8
1915 Female, age 42, unknown 706.3
1942 Male, age 51, unknown 676.7
2021 Male, age 53, unknown 671.6
2223 Female, age 72, unknown 661.8
2218 Male, age 76, both hemispheres 629.2

MIDBRAIN - GTEx RNA-seqi
Average nTPM 715.2
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 715.2
Samples: 139

Max nTPM: 1330.3
Min nTPM: 224.1
Std nTPM: 216.3
Median nTPM: 675.3
GTEX-1GTWX-0011-R2b-SM-ADEH5 60-69 years, male 1330.3
GTEX-12WSA-0011-R2a-SM-57WDK 60-69 years, male 1230.0
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 1229.0
GTEX-1IGQW-0011-R2b-SM-D4P26 60-69 years, male 1224.3
GTEX-1I1GS-0011-R2b-SM-CMKHG 60-69 years, male 1195.4
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 1182.6
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 1153.8
GTEX-14PJO-0011-R2a-SM-5ZZVF 60-69 years, male 1118.2
GTEX-1GZ2Q-0011-R2b-SM-9OSWO 40-49 years, male 1100.8
GTEX-13SLW-0011-R2b-SM-5O9C6 70-79 years, male 1100.1
GTEX-1LVAO-0011-R2a-SM-EYYX1 60-69 years, male 1086.9
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 1192.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 1192.2
FF:10158-103A5 76 years, female 1192.2

MIDBRAIN - Pig RNA-seqi
Average nTPM 383.4
Pig sample Sample description nTPM
Midbrain
nTPM: 371.0
Samples: 4

Max nTPM: 554.9
Min nTPM: 212.9
Sample A Female 554.9
Sample B Female 480.3
Sample C Male 236.0
Sample D Male 212.9
Periaqueductal gray
nTPM: 315.8
Samples: 3

Max nTPM: 395.5
Min nTPM: 267.8
Sample B Female 395.5
Sample C Male 284.0
Sample D Male 267.8
Substantia nigra
nTPM: 383.4
Samples: 4

Max nTPM: 443.1
Min nTPM: 312.8
Sample A Female 371.6
Sample B Female 406.1
Sample C Male 312.8
Sample D Male 443.1
Superior colliculi
nTPM: 333.0
Samples: 4

Max nTPM: 380.6
Min nTPM: 264.4
Sample A Female 380.6
Sample B Female 264.4
Sample C Male 323.5
Sample D Male 363.5

MIDBRAIN - Mouse RNA-seqi
Average nTPM 505.0
Mouse sample Sample description nTPM
Midbrain
nTPM: 505.0
Samples: 4

Max nTPM: 542.0
Min nTPM: 478.0
Sample A Male 542.0
Sample B Male 485.4
Sample C Female 478.0
Sample D Female 514.5

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 5.0
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 5.0
2130 Antisense, RP_Baylor_102712, Mouse strain C57BL/6J (56 days, male) 6.1
2129 Antisense, RP_Baylor_102712, Mouse strain C57BL/6J (56 days, male) 6.0
68269598 Antisense, RP_041129_01_H05, Mouse strain C57BL/6J (56 days, male) 4.0

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.