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TISSUE PRIMARY DATA SMALL INTESTINE Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM ENDOMETRIUM
EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MEDULLA OBLONGATA MIDBRAIN NASOPHARYNX ORAL MUCOSA
OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PONS PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE SMOOTH MUSCLE
SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THALAMUS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA WHITE MATTER
ANTIBODIES
AND
VALIDATION
Dictionary
Small intestine
Tissue proteome
Intestine
SMALL INTESTINE - Expression summary
Protein expression
Small intestinei

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
h
m
l
n
Glandular cells: Low
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:195.7 nTPM
HPA:195.7 nTPM
GTEx:141.2 nTPM
FANTOM5:331.2 Scaled Tags Per Million

SMALL INTESTINE - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.

Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Read more
Antibody HPA001471Antibody CAB009828
Glandular cells LowMedium





SMALL INTESTINE - HPA RNA-seqi

The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.

Information about each individual sample is listed below, including gender, age, a tissue section image and estimated fractions of cell types. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples.
Read more
Average nTPM 195.7
overview
Male, age 65
Small intestine sample 232
nTPM: 151.6
Cell types%
Glandular cells:
55

Smooth muscle cells:
5

Other cell types:
40

overview
Male, age 39
Small intestine sample 233
nTPM: 179
Cell types%
Glandular cells:
40

Smooth muscle cells:
5

Other cell types:
55

overview
Male, age 68
Small intestine sample 234
nTPM: 292.5
Cell types%
Glandular cells:
30

Smooth muscle cells:
15

Other cell types:
55

N/A
Male, age 85
Small intestine sample 235
nTPM: 159.7

SMALL INTESTINE - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 141.2
GTEx sample id Sample description nTPM
Small Intestine - Terminal Ileum
Average nTPM: 141.2
Samples: 187

Max nTPM: 460.1
Min nTPM: 2.3
Std nTPM: 78.6
Median nTPM: 134.3
GTEX-Y5LM-1626-SM-4VDTB 40-49 years, female 460.1
GTEX-ZQG8-2526-SM-57WEQ 60-69 years, female 437.3
GTEX-13FTW-2026-SM-5IJE2 40-49 years, male 399.3
GTEX-1R9K5-2026-SM-E6CPS 50-59 years, male 336.2
GTEX-14BMU-1426-SM-5TDE5 20-29 years, female 329.4
GTEX-ZVT2-2126-SM-5NQ93 50-59 years, female 321.0
GTEX-13RTK-0826-SM-5Q5C6 20-29 years, male 303.2
GTEX-1C64O-2526-SM-79ONO 60-69 years, male 294.0
GTEX-1R7EV-1226-SM-DTX82 40-49 years, male 288.2
GTEX-1OJC3-1626-SM-E9U65 20-29 years, male 279.7
GTEX-18A66-2526-SM-7KFTZ 60-69 years, male 274.0
GTEX-1RAZA-1826-SM-DTXA2 20-29 years, male 264.4
GTEX-1NSGN-2126-SM-DPRYN 50-59 years, male 251.0
GTEX-14PJ6-1726-SM-6AJBN 60-69 years, female 248.8
GTEX-1PIEJ-1526-SM-E6CP8 20-29 years, female 248.5
GTEX-13D11-0726-SM-5LZZB 50-59 years, female 246.7
GTEX-ZVP2-1726-SM-5GU5P 50-59 years, male 241.5
GTEX-WY7C-1826-SM-4ONCE 50-59 years, male 241.4
GTEX-WHSB-1026-SM-4M1XN 50-59 years, male 238.2
GTEX-VJYA-0926-SM-4KL1N 60-69 years, male 234.5
GTEX-ZPIC-2326-SM-57WDW 40-49 years, female 226.6
GTEX-Z9EW-0926-SM-5CVMM 40-49 years, male 226.2
GTEX-1R7EU-1326-SM-E6CQ6 60-69 years, male 223.6
GTEX-1QCLZ-2126-SM-EWRNC 60-69 years, female 223.0
GTEX-1QPFJ-2626-SM-DPRZU 30-39 years, female 221.7
GTEX-11P82-0826-SM-5P9GU 20-29 years, male 220.2
GTEX-ZLV1-1126-SM-4WWBW 60-69 years, female 216.8
GTEX-1C475-1426-SM-793CH 40-49 years, female 216.0
GTEX-1J8QM-1026-SM-C1YQA 60-69 years, female 215.4
GTEX-XBED-1426-SM-4AT4G 60-69 years, male 212.0
GTEX-1HSMQ-2226-SM-C1YRD 50-59 years, male 210.3
GTEX-16A39-1426-SM-6LLI6 30-39 years, female 209.3
GTEX-13FH7-1226-SM-5IJFK 50-59 years, female 208.1
GTEX-X15G-1426-SM-4PQZK 50-59 years, female 205.6
GTEX-13PL7-2626-SM-5IFH4 60-69 years, female 204.4
GTEX-13113-1226-SM-5EGHT 60-69 years, female 204.2
GTEX-15G1A-1726-SM-6LPI4 30-39 years, male 199.5
GTEX-ZTX8-0526-SM-59HLD 20-29 years, male 198.4
GTEX-139T6-1026-SM-5IJGC 50-59 years, male 193.6
GTEX-14XAO-1926-SM-6ETZO 60-69 years, female 192.9
GTEX-WRHK-1026-SM-4MVOD 20-29 years, female 192.0
GTEX-11EQ9-1326-SM-5985X 30-39 years, male 190.6
GTEX-XAJ8-0526-SM-47JYK 40-49 years, male 189.7
GTEX-1IKOE-1926-SM-ARU7V 30-39 years, female 188.3
GTEX-WFJO-0926-SM-4LVM2 30-39 years, male 188.0
GTEX-1GL5R-2026-SM-7MKHP 50-59 years, male 187.9
GTEX-139YR-2226-SM-5IFFW 50-59 years, male 184.7
GTEX-1B8KZ-1126-SM-7IGLX 50-59 years, male 182.8
GTEX-ZG7Y-1926-SM-DNZZ5 50-59 years, male 178.7
GTEX-1PDJ9-1826-SM-E9U66 20-29 years, male 178.4
GTEX-ZF29-1626-SM-4WKFJ 60-69 years, female 174.4
GTEX-ZDTT-1726-SM-5HL69 60-69 years, male 173.4
GTEX-YEC4-1726-SM-4W21E 40-49 years, male 172.9
GTEX-14PJN-0826-SM-686ZL 30-39 years, male 170.4
GTEX-14E6E-1626-SM-5RQI7 30-39 years, male 169.1
GTEX-1QP2A-2426-SM-EXOJA 50-59 years, male 168.9
GTEX-WFG7-1726-SM-4LVME 20-29 years, male 167.3
GTEX-16MTA-1526-SM-6LPJB 50-59 years, male 166.3
GTEX-111CU-1326-SM-5NQ8L 50-59 years, male 165.9
GTEX-131XG-1726-SM-5LZUR 50-59 years, female 164.3
GTEX-11NSD-1726-SM-5N9C3 20-29 years, male 163.5
GTEX-14PK6-1626-SM-6871I 70-79 years, female 162.1
GTEX-YFCO-1326-SM-664NV 40-49 years, male 162.1
GTEX-18QFQ-1626-SM-72D7H 30-39 years, male 161.1
GTEX-1QP28-1726-SM-E6CRK 50-59 years, female 160.0
GTEX-1L5NE-1826-SM-EV79T 50-59 years, male 159.8
GTEX-13O21-1026-SM-5IJDU 50-59 years, male 159.2
GTEX-ZZ64-0526-SM-5GZXM 20-29 years, male 159.2
GTEX-17MFQ-1026-SM-7KFSZ 20-29 years, male 158.7
GTEX-ZP4G-1626-SM-57WGD 20-29 years, female 158.3
GTEX-1JN76-1126-SM-C1YRL 20-29 years, female 155.2
GTEX-117YX-0326-SM-5GICL 50-59 years, male 153.9
GTEX-1H1DE-1426-SM-9JGHV 20-29 years, male 153.0
GTEX-YB5E-1526-SM-5IFIE 40-49 years, male 152.1
GTEX-XMK1-1826-SM-4B66F 40-49 years, male 151.6
GTEX-145ME-0926-SM-5O9AR 40-49 years, female 151.0
GTEX-14PKU-1626-SM-6871C 40-49 years, female 150.1
GTEX-WH7G-1626-SM-4LVMY 40-49 years, male 148.2
GTEX-ZA64-1226-SM-5HL7B 20-29 years, male 147.3
GTEX-ZTPG-2626-SM-57WFX 20-29 years, female 147.0
GTEX-1S5ZA-1326-SM-EV7BB 20-29 years, male 146.0
GTEX-1MGNQ-2326-SM-EV7BG 40-49 years, male 145.4
GTEX-X5EB-1626-SM-4E3IV 40-49 years, male 145.1
GTEX-ZVZP-1826-SM-5GZXB 50-59 years, male 144.0
GTEX-11VI4-1626-SM-5EQKO 40-49 years, female 143.2
GTEX-13O61-1326-SM-5KM31 60-69 years, male 143.0
GTEX-1QW4Y-1226-SM-EWRMY 30-39 years, male 141.8
GTEX-131XF-1326-SM-5GCMQ 60-69 years, male 138.1
GTEX-1CAMR-0826-SM-7MKFK 20-29 years, male 138.0
GTEX-11XUK-1426-SM-5EQMG 40-49 years, female 137.3
GTEX-14DAR-1426-SM-5RQIR 50-59 years, male 135.2
GTEX-1KXAM-2026-SM-DHXKI 60-69 years, male 135.0
GTEX-XGQ4-1326-SM-4GIDU 50-59 years, male 134.8
GTEX-1H11D-2526-SM-9JGGU 40-49 years, male 134.3
GTEX-11P7K-1626-SM-5GU63 30-39 years, male 133.1
GTEX-WFG8-1626-SM-4LVMB 20-29 years, male 131.4
GTEX-1399S-2026-SM-5KM4B 30-39 years, female 131.2
GTEX-ZYFG-2026-SM-5E43Y 60-69 years, female 131.1
GTEX-1399U-2126-SM-5IFEZ 50-59 years, female 129.8
GTEX-1MUQO-2426-SM-EAZ5A 60-69 years, male 128.9
GTEX-1LBAC-1526-SM-CXZKU 20-29 years, male 127.4
GTEX-145LT-1026-SM-5LU9O 40-49 years, male 125.8
GTEX-183FY-1626-SM-793D8 20-29 years, male 124.2
GTEX-14PKV-2026-SM-6AJ9A 20-29 years, female 123.7
GTEX-1122O-1326-SM-5H11F 60-69 years, female 122.2
GTEX-144GM-1026-SM-79OKU 20-29 years, male 122.0
GTEX-1RAZQ-2226-SM-DPRZR 30-39 years, male 117.5
GTEX-1CAMS-2426-SM-7DHMV 40-49 years, female 117.1
GTEX-ZLFU-1526-SM-4WWBT 40-49 years, male 116.2
GTEX-Y9LG-1626-SM-5IFHM 30-39 years, male 115.5
GTEX-11DXX-1626-SM-5H11H 60-69 years, female 113.5
GTEX-XUZC-1426-SM-4BRV3 30-39 years, female 113.5
GTEX-1JK1U-1226-SM-CNNPN 60-69 years, male 113.4
GTEX-1RAZR-1826-SM-E6CRE 40-49 years, male 112.6
GTEX-1R9PM-1626-SM-DPRY9 20-29 years, male 112.0
GTEX-16AAH-1426-SM-7KFTR 50-59 years, male 111.7
GTEX-17KNJ-1626-SM-718AL 50-59 years, male 110.8
GTEX-XXEK-1026-SM-4BRUW 50-59 years, male 110.5
GTEX-ZLWG-1626-SM-DNZZ1 50-59 years, female 109.9
GTEX-13X6H-1826-SM-7EWCZ 50-59 years, female 109.8
GTEX-WQUQ-2426-SM-4MVNW 60-69 years, male 109.6
GTEX-13QBU-1926-SM-5IJEW 40-49 years, female 109.4
GTEX-ZEX8-1826-SM-57WBH 50-59 years, male 108.8
GTEX-1GMR2-1026-SM-7MKHJ 50-59 years, male 108.1
GTEX-1OKEX-1126-SM-DTXEB 60-69 years, male 105.6
GTEX-13W3W-2026-SM-5K7UL 60-69 years, female 105.1
GTEX-1LGOU-1426-SM-D3L8N 20-29 years, female 104.5
GTEX-WFON-1526-SM-4LVMP 40-49 years, male 103.9
GTEX-14PJ3-1326-SM-664O7 50-59 years, male 103.0
GTEX-1AX8Z-2526-SM-731E3 60-69 years, male 102.6
GTEX-133LE-1426-SM-5IFH1 20-29 years, female 101.8
GTEX-1J8Q3-2526-SM-CNNQ4 60-69 years, male 101.7
GTEX-13CF3-1226-SM-5LZXN 60-69 years, female 101.2
GTEX-ZTSS-0926-SM-59865 40-49 years, male 98.5
GTEX-12BJ1-1926-SM-5HL9Z 60-69 years, male 98.2
GTEX-11LCK-1926-SM-5A5KE 30-39 years, male 97.3
GTEX-WEY5-1526-SM-4LMJF 40-49 years, female 96.6
GTEX-ZXES-1526-SM-5NQ95 30-39 years, female 96.4
GTEX-14PN3-2026-SM-68729 60-69 years, female 94.6
GTEX-1F75I-2526-SM-9WPOZ 40-49 years, male 94.2
GTEX-ZPCL-1726-SM-57WEO 60-69 years, female 92.0
GTEX-13111-1426-SM-5DUW3 50-59 years, male 90.2
GTEX-1K9T9-2726-SM-D4P3E 50-59 years, female 88.5
GTEX-YF7O-1826-SM-5IFIU 50-59 years, male 87.2
GTEX-1399R-2026-SM-5K7WN 30-39 years, male 86.7
GTEX-15EU6-1826-SM-7PC1W 50-59 years, male 83.1
GTEX-XPVG-1726-SM-4B65W 50-59 years, male 82.0
GTEX-ZAB5-1526-SM-5HL9P 50-59 years, male 80.6
GTEX-11I78-1126-SM-5A5K5 50-59 years, female 79.8
GTEX-1B8KE-1726-SM-7IGMN 50-59 years, male 78.1
GTEX-1192X-2526-SM-59868 50-59 years, male 76.7
GTEX-UPK5-2026-SM-4JBIM 40-49 years, male 76.0
GTEX-1CB4F-1826-SM-7MGXI 60-69 years, male 70.3
GTEX-Y3I4-1326-SM-4TT8Z 50-59 years, male 69.2
GTEX-1AMFI-1926-SM-731F2 50-59 years, female 69.1
GTEX-11DXZ-1326-SM-5H11X 50-59 years, male 68.5
GTEX-1497J-1926-SM-5TDCC 60-69 years, male 67.5
GTEX-Y114-1426-SM-4TT6W 50-59 years, female 66.5
GTEX-WYJK-1526-SM-4ONCW 50-59 years, male 65.6
GTEX-15DZA-0826-SM-6AJBF 30-39 years, female 65.3
GTEX-Y3IK-1726-SM-4YCCR 50-59 years, female 63.1
GTEX-Y5V5-1826-SM-4VDS5 60-69 years, female 62.5
GTEX-17HHE-1726-SM-79OKT 50-59 years, male 61.2
GTEX-111YS-1426-SM-5GID8 60-69 years, male 60.5
GTEX-16NGA-1126-SM-7KFSY 40-49 years, female 58.1
GTEX-1S82Z-1826-SM-E9TIK 30-39 years, female 57.9
GTEX-1I1GT-1826-SM-ARZLW 60-69 years, female 53.2
GTEX-1R9JW-1926-SM-EVR4J 30-39 years, female 52.4
GTEX-131XE-0926-SM-5HL7J 50-59 years, male 47.9
GTEX-13OVI-1926-SM-5IJCG 60-69 years, female 46.7
GTEX-ZF2S-1726-SM-57WFT 50-59 years, female 45.9
GTEX-ZQUD-0926-SM-57WE3 30-39 years, male 43.3
GTEX-12WSK-1526-SM-5CVNO 40-49 years, female 41.2
GTEX-14C39-1826-SM-5ZZW4 40-49 years, male 33.7
GTEX-1JMQK-2426-SM-CXZJU 60-69 years, male 32.6
GTEX-VUSG-1726-SM-4KKZL 50-59 years, male 28.6
GTEX-1LH75-1926-SM-DIPGD 50-59 years, female 28.5
GTEX-148VJ-2226-SM-5NQ9M 70-79 years, male 16.7
GTEX-11TUW-1926-SM-5BC58 60-69 years, male 15.2
GTEX-ZC5H-2326-SM-4WAYT 40-49 years, female 14.4
GTEX-1JJE9-2226-SM-CXZJM 70-79 years, male 10.9
GTEX-1EMGI-2826-SM-7IGMR 60-69 years, male 7.4
GTEX-13NYB-1826-SM-5J1N3 40-49 years, male 7.0
GTEX-Y111-2226-SM-4SOJB 50-59 years, male 6.9
GTEX-1GMR3-2726-SM-7MKFB 40-49 years, male 6.7
GTEX-1BAJH-2526-SM-7IGOT 70-79 years, male 6.5
GTEX-1R9K4-2326-SM-E6CRB 60-69 years, male 2.3
Show allShow less

SMALL INTESTINE - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 331.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Small intestine
Scaled Tags Per Million: 331.2
FF:10024-101D6 15,40,85 years, mixed 331.2

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