BASAL GANGLIA - Expression summary
Protein expression
Caudatei
h
m
l
n
Glial cells: Medium
Neuronal cells: Low
Protein profiling
Multiplex tissuei
RNA expressioni
Consensus:91.2 nTPM
HPA:91.2 nTPM
GTEx:121.2 nTPM
FANTOM5:115.2 Scaled Tags Per Million
Pig:37.6 nTPM
Mouse:163.0 nTPM
Allen mouse:10.1 Expression energy

CAUDATE - Antibody stainingi
Antibody HPA018987Antibody HPA044971Antibody CAB004217
Glial cells LowNot detectedHigh
Neuronal cells Not detectedLow-







BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 91.2
Sample id Sample description nTPM
Caudate nucleus
nTPM: 80.2
2289 Male, age 61, right hemisphere 90.6
2290 Female, age 72, unknown 85.6
2846 Female, age 79, unknown 84.9
1781 Male, age 74, unknown 82.0
2288 Male, age 75, left hemisphere 81.6
1857 Female, age 85, left hemisphere 74.9
1854 Male, age 80, left hemisphere 73.1
2481 Female, age 94, left hemisphere 68.6
Claustrum
nTPM: 89.2
2568 Male, age 61, both hemispheres 102.5
2284 Female, age 91, both hemispheres 98.1
2645 Female, age 72, unknown 97.0
2198 Male, age 80, both hemispheres 91.1
2491 Male, age 75, both hemispheres 90.4
2292 Female, age 85, both hemispheres 89.7
2196 Female, age 79, unknown 80.9
1956 Male, age 74, unknown 80.6
2392 Female, age 94, both hemispheres 73.1
Globus pallidus, externus
nTPM: 83.1
2646 Male, age 61, right hemisphere 91.9
2567 Female, age 72, unknown 90.2
2772 Female, age 79, unknown 81.3
1996 Male, age 80, right hemisphere 77.2
2395 Male, age 75, both hemispheres 74.7
Globus pallidus, internus
nTPM: 75.7
2566 Female, age 72, unknown 86.6
2287 Male, age 75, right hemisphere 79.9
2778 Female, age 91, both hemispheres 78.3
2111 Female, age 85, right hemisphere 75.1
2483 Female, age 94, right hemisphere 70.9
1818 Male, age 74, unknown 70.7
2037 Male, age 80, right hemisphere 68.6
Nucleus accumbens
nTPM: 80.1
1783 Male, age 74, unknown 94.4
1806 Female, age 85, left hemisphere 82.8
1856 Female, age 91, right hemisphere 81.9
2698 Female, age 72, unknown 81.2
2732 Male, age 80, right hemisphere 80.7
2824 Male, age 61, right hemisphere 80.7
2286 Male, age 75, left hemisphere 72.9
2391 Female, age 94, left hemisphere 66.6
Nucleus basalis of Meynert
nTPM: 77.7
2569 Male, age 61, both hemispheres 92.1
2484 Female, age 94, left hemisphere 77.7
2821 Male, age 75, both hemispheres 71.5
2393 Male, age 80, right hemisphere 69.5
Nucleus of the diagonal band
nTPM: 91.2
2029 Male, age 61, right hemisphere 93.8
2195 Female, age 85, both hemispheres 93.6
1979 Male, age 74, unknown 92.8
2775 Male, age 80, right hemisphere 91.8
1812 Female, age 91, both hemispheres 84.1
Olfactory tubercle
nTPM: 87.4
1998 Female, age 91, both hemispheres 94.4
2487 Female, age 94, left hemisphere 89.7
1846 Male, age 80, right hemisphere 83.5
2856 Male, age 75, right hemisphere 82.1
Putamen
nTPM: 82.8
2647 Male, age 75, left hemisphere 92.1
2466 Female, age 79, unknown 88.9
2489 Female, age 72, unknown 88.7
1829 Male, age 74, unknown 82.6
1838 Male, age 80, right hemisphere 82.5
1937 Female, age 91, right hemisphere 75.1
2482 Female, age 94, left hemisphere 69.6
Septal nuclei
nTPM: 89.1
1960 Male, age 74, unknown 105.0
2031 Female, age 72, unknown 94.9
2394 Male, age 61, left hemisphere 92.7
2059 Female, age 85, both hemispheres 89.0
2009 Female, age 91, both hemispheres 81.7
2199 Male, age 80, right hemisphere 80.6
2629 Female, age 94, right hemisphere 79.9

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 121.2
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 111.7
Samples: 246

Max nTPM: 168.4
Min nTPM: 70.9
Std nTPM: 20.4
Median nTPM: 112.8
GTEX-139TT-0011-R5b-SM-5K7W8 60-69 years, male 168.4
GTEX-13O3Q-0011-R5b-SM-5P9H4 50-59 years, male 159.4
GTEX-13SLX-0011-R5a-SM-5O9BV 50-59 years, female 159.4
GTEX-13RTJ-0011-R5a-SM-5P9HR 60-69 years, male 158.6
GTEX-14JIY-0011-R5b-SM-62LE7 60-69 years, male 157.1
GTEX-145MH-0011-R5a-SM-5P9JT 50-59 years, male 156.9
GTEX-11DYG-0011-R5a-SM-DO928 60-69 years, male 154.8
GTEX-13OW8-0011-R5b-SM-5L3FQ 60-69 years, male 154.5
GTEX-1HBPI-0011-R5a-SM-CKZOW 50-59 years, male 150.2
GTEX-1C6WA-0011-R5a-SM-9WG5X 60-69 years, male 149.4
GTEX-13G51-0011-R5a-SM-5L3EB 60-69 years, male 148.8
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Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 121.2
Samples: 246

Max nTPM: 191.2
Min nTPM: 57.8
Std nTPM: 22.5
Median nTPM: 123.2
GTEX-12WSD-0011-R6b-SM-5P9JU 60-69 years, female 191.2
GTEX-13FLV-0011-R6a-SM-5KLZ4 50-59 years, male 176.4
GTEX-1J8Q2-0011-R6a-SM-CKZPG 60-69 years, male 171.0
GTEX-13IVO-0011-R6b-SM-5K7X9 70-79 years, male 169.2
GTEX-14BIN-0011-R6a-SM-5S2RH 50-59 years, female 166.2
GTEX-17F97-0011-R6a-SM-7EPGS 50-59 years, male 165.9
GTEX-14PQA-0011-R6b-SM-6AJAM 50-59 years, female 162.5
GTEX-13FHO-0011-R6b-SM-5LZX1 60-69 years, male 162.3
GTEX-1HR9M-0011-R6a-SM-ARU6Z 60-69 years, male 159.4
GTEX-12WSH-0011-R6b-SM-5P9F4 50-59 years, male 156.1
GTEX-12WSE-0011-R6b-SM-5LZV5 20-29 years, male 156.0
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Brain - Putamen (basal ganglia)
Average nTPM: 113.6
Samples: 205

Max nTPM: 168.1
Min nTPM: 70.1
Std nTPM: 20.4
Median nTPM: 113.6
GTEX-12WSI-0011-R7b-SM-5GU78 50-59 years, male 168.1
GTEX-S7SE-0011-R7A-SM-2XCDI 50-59 years, male 157.6
GTEX-13O3Q-0011-R7a-SM-5KM38 50-59 years, male 151.6
GTEX-139TT-0011-R7b-SM-5J2MN 60-69 years, male 149.9
GTEX-1IY9M-0011-R7a-SM-D4P49 60-69 years, male 148.2
GTEX-14PN4-0011-R7b-SM-69LQQ 50-59 years, male 146.9
GTEX-11OF3-0011-R7a-SM-57WCG 60-69 years, male 146.8
GTEX-13RTJ-0011-R7b-SM-5P9JS 60-69 years, male 146.6
GTEX-13G51-0011-R7b-SM-5LZXG 60-69 years, male 145.8
GTEX-1J8Q2-0011-R7a-SM-CKZPF 60-69 years, male 145.3
GTEX-145MH-0011-R7a-SM-5PNWH 50-59 years, male 145.0
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BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 115.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 104.7
FF:10164-103B2 76 years, female 104.7
Globus pallidus
Scaled Tags Per Million: 115.2
FF:10175-103C4 60 years, female 136.5
FF:10161-103A8 76 years, female 93.9
Nucleus accumbens
Scaled Tags Per Million: 106.2
FF:10037-101F1 23-56 years, mixed 106.2
Putamen
Scaled Tags Per Million: 109.7
FF:10176-103C5 60 years, female 109.7

BASAL GANGLIA - Pig RNA-seqi
Average nTPM 37.6
Pig sample Sample description nTPM
Caudate
nTPM: 37.6
Samples: 4

Max nTPM: 43.4
Min nTPM: 31.8
Sample A Female 31.8
Sample B Female 41.9
Sample C Male 43.4
Sample D Male 33.3
Putamen
nTPM: 35.6
Samples: 4

Max nTPM: 39.7
Min nTPM: 29.5
Sample A Female 33.6
Sample B Female 29.5
Sample C Male 39.7
Sample D Male 39.4
Septum
nTPM: 33.7
Samples: 4

Max nTPM: 37.1
Min nTPM: 28.6
Sample A Female 36.0
Sample B Female 33.1
Sample C Male 37.1
Sample D Male 28.6
Ventral pallidum
nTPM: 35.1
Samples: 4

Max nTPM: 42.3
Min nTPM: 28.5
Sample A Female 28.5
Sample B Female 38.1
Sample C Male 42.3
Sample D Male 31.5

BASAL GANGLIA - Mouse RNA-seqi
Average nTPM 163.0
Mouse sample Sample description nTPM
Caudate putamen
nTPM: 141.7
Samples: 4

Max nTPM: 161.3
Min nTPM: 120.3
Sample A Male 151.9
Sample B Male 161.3
Sample C Female 120.3
Sample D Female 133.1
Septum
nTPM: 161.6
Samples: 4

Max nTPM: 171.5
Min nTPM: 143.6
Sample A Male 163.1
Sample B Male 168.2
Sample C Female 171.5
Sample D Female 143.6
Ventral forebrain
nTPM: 163.0
Samples: 4

Max nTPM: 181.3
Min nTPM: 149.2
Sample A Male 166.1
Sample B Male 155.3
Sample C Female 181.3
Sample D Female 149.2

BASAL GANGLIA - Allen Mouse ISHi
Max Expression energy 10.1
Allen experiment id Experiment description Expression energy
Striatum
Expression energy: 8.9
69059817 Antisense, RP_050317_04_B01, Mouse strain C57BL/6J (56 days, male) 8.9
Pallidum
Expression energy: 10.1
69059817 Antisense, RP_050317_04_B01, Mouse strain C57BL/6J (56 days, male) 10.1

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