MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:94.1 nTPM
HPA:94.1 nTPM
GTEx:103.4 nTPM
FANTOM5:76.5 Scaled Tags Per Million
Pig:41.5 nTPM
Mouse:120.7 nTPM
Allen mouse:10.9 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 94.1
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 87.6
2586 Male, age 75, left hemisphere 118.5
2219 Male, age 76, both hemispheres 94.1
1827 Male, age 72, unknown 92.2
2828 Female, age 72, unknown 91.4
2666 Male, age 74, left hemisphere 86.3
2411 Female, age 72, unknown 81.9
1833 Male, age 53, unknown 80.8
1830 Male, age 51, unknown 78.2
2019 Male, age 18, unknown 77.5
1870 Female, age 42, unknown 74.6
Dorsal raphe nucleus
nTPM: 80.9
2047 Male, age 72, unknown 91.5
2298 Female, age 72, unknown 82.4
2750 Male, age 76, both hemispheres 79.1
1828 Male, age 53, unknown 75.7
2016 Female, age 72, unknown 75.7
Inferior colliculus
nTPM: 81.0
2849 Male, age 72, unknown 85.9
1890 Male, age 53, unknown 81.9
1848 Female, age 42, unknown 80.9
2097 Female, age 72, unknown 75.4
Median raphe nucleus
nTPM: 87.1
2220 Male, age 76, midline 87.1
Pedunculopontine tegmental nucleus
nTPM: 76.3
1921 Female, age 85, both hemispheres 84.1
2334 Male, age 80, both hemispheres 80.8
2338 Male, age 61, both hemispheres 64.0
Periaquaductal grey, anterior
nTPM: 94.1
2502 Female, age 75, unknown 96.7
1947 Male, age 18, unknown 93.0
1795 Male, age 51, unknown 92.5
Periaquaductal grey, dorsal
nTPM: 79.1
1840 Male, age 53, unknown 82.6
1831 Male, age 72, unknown 80.0
2464 Female, age 72, unknown 77.4
2850 Male, age 76, both hemispheres 76.6
Periaquaductal grey, lateral
nTPM: 81.6
2053 Male, age 18, unknown 86.8
2272 Male, age 74, both hemispheres 80.1
2140 Male, age 76, both hemispheres 77.9
Pretectal area
nTPM: 85.9
2007 Male, age 72, unknown 95.6
1817 Female, age 42, unknown 92.1
1816 Male, age 51, unknown 91.2
2407 Male, age 75, both hemispheres 90.9
1944 Female, age 72, unknown 88.1
2825 Male, age 18, unknown 87.9
1815 Male, age 53, unknown 84.7
2316 Male, age 76, right hemisphere 80.0
2667 Female, age 75, unknown 79.4
2224 Female, age 72, unknown 78.0
2273 Male, age 74, both hemispheres 76.4
Red nucleus
nTPM: 79.9
2584 Male, age 75, left hemisphere 100.1
2588 Male, age 74, left hemisphere 84.4
2785 Male, age 18, unknown 83.8
2769 Male, age 72, unknown 81.2
2725 Female, age 75, unknown 80.9
2227 Male, age 72, unknown 79.1
2503 Female, age 72, unknown 77.5
1904 Male, age 53, unknown 77.4
2823 Male, age 76, right hemisphere 75.8
1865 Male, age 51, unknown 73.8
1821 Female, age 72, unknown 72.6
1954 Female, age 42, unknown 72.5
Substantia nigra
nTPM: 83.8
2665 Male, age 74, both hemispheres 95.8
2583 Male, age 75, right hemisphere 94.4
1916 Female, age 42, unknown 94.2
1941 Male, age 53, unknown 91.3
1851 Male, age 51, unknown 87.8
1889 Female, age 72, unknown 83.0
2590 Female, age 75, unknown 82.3
2699 Male, age 18, unknown 80.3
2409 Female, age 72, unknown 67.3
2241 Male, age 72, unknown 61.5
Superior colliculus
nTPM: 83.9
2664 Male, age 75, both hemispheres 104.6
1796 Male, age 53, unknown 91.3
2668 Female, age 75, unknown 87.1
2261 Male, age 18, unknown 85.2
1839 Male, age 51, unknown 84.9
2087 Female, age 72, unknown 83.0
1995 Male, age 72, unknown 76.7
2587 Male, age 74, left hemisphere 76.5
1895 Male, age 76, right hemisphere 75.3
1913 Female, age 42, unknown 74.3
Ventral tegmental area
nTPM: 85.1
2218 Male, age 76, both hemispheres 91.9
1942 Male, age 51, unknown 90.4
2410 Female, age 72, unknown 89.8
1915 Female, age 42, unknown 86.5
2021 Male, age 53, unknown 79.8
2223 Female, age 72, unknown 72.4

MIDBRAIN - GTEx RNA-seqi
Average nTPM 103.4
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 103.4
Samples: 139

Max nTPM: 184.1
Min nTPM: 64.9
Std nTPM: 22.0
Median nTPM: 103.3
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 184.1
GTEX-13OW6-0011-R2a-SM-5L3HG 50-59 years, male 152.0
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 150.4
GTEX-15DYW-0011-R2b-SM-7KUKY 60-69 years, female 149.4
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 148.6
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 142.1
GTEX-13G51-0011-R2b-SM-5LZXS 60-69 years, male 140.2
GTEX-147GR-0011-R2b-SM-5S2RQ 60-69 years, male 139.7
GTEX-RU72-0011-R2A-SM-2TF6O 50-59 years, female 139.5
GTEX-13NYS-0011-R2b-SM-5MR4G 60-69 years, male 138.2
GTEX-14BIN-0011-R2a-SM-5S2RJ 50-59 years, female 136.5
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 76.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 76.5
FF:10158-103A5 76 years, female 76.5

MIDBRAIN - Pig RNA-seqi
Average nTPM 41.5
Pig sample Sample description nTPM
Midbrain
nTPM: 40.1
Samples: 4

Max nTPM: 47.8
Min nTPM: 29.6
Sample A Female 47.8
Sample B Female 29.6
Sample C Male 45.6
Sample D Male 37.2
Periaqueductal gray
nTPM: 31.6
Samples: 3

Max nTPM: 35.8
Min nTPM: 28.3
Sample B Female 30.6
Sample C Male 35.8
Sample D Male 28.3
Substantia nigra
nTPM: 36.2
Samples: 4

Max nTPM: 46.7
Min nTPM: 30.9
Sample A Female 46.7
Sample B Female 31.3
Sample C Male 35.9
Sample D Male 30.9
Superior colliculi
nTPM: 41.5
Samples: 4

Max nTPM: 46.2
Min nTPM: 38.8
Sample A Female 46.2
Sample B Female 38.8
Sample C Male 40.6
Sample D Male 40.2

MIDBRAIN - Mouse RNA-seqi
Average nTPM 120.7
Mouse sample Sample description nTPM
Midbrain
nTPM: 120.7
Samples: 4

Max nTPM: 128.6
Min nTPM: 113.6
Sample A Male 128.6
Sample B Male 113.6
Sample C Female 117.9
Sample D Female 122.7

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 10.9
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 10.9
69059817 Antisense, RP_050317_04_B01, Mouse strain C57BL/6J (56 days, male) 10.9

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The Human Protein Atlas

The Human Protein Atlas project is funded
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