MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:291.6 nTPM
HPA:291.6 nTPM
GTEx:208.0 nTPM
FANTOM5:93.2 Scaled Tags Per Million
Pig:31.3 nTPM
Mouse:113.0 nTPM
Allen mouse:7.4 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 291.6
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 176.8
1870 Female, age 42, unknown 204.0
2828 Female, age 72, unknown 195.0
2411 Female, age 72, unknown 188.1
1833 Male, age 53, unknown 180.7
1830 Male, age 51, unknown 176.8
1827 Male, age 72, unknown 176.2
2019 Male, age 18, unknown 173.0
2219 Male, age 76, both hemispheres 163.2
2666 Male, age 74, left hemisphere 157.6
2586 Male, age 75, left hemisphere 153.6
Dorsal raphe nucleus
nTPM: 221.2
2298 Female, age 72, unknown 280.9
2016 Female, age 72, unknown 231.4
2750 Male, age 76, both hemispheres 209.4
1828 Male, age 53, unknown 197.8
2047 Male, age 72, unknown 186.2
Inferior colliculus
nTPM: 160.1
1848 Female, age 42, unknown 163.3
2849 Male, age 72, unknown 162.5
2097 Female, age 72, unknown 160.9
1890 Male, age 53, unknown 153.8
Median raphe nucleus
nTPM: 213.8
2220 Male, age 76, midline 213.8
Pedunculopontine tegmental nucleus
nTPM: 175.4
2334 Male, age 80, both hemispheres 195.5
1921 Female, age 85, both hemispheres 170.3
2338 Male, age 61, both hemispheres 160.4
Periaquaductal grey, anterior
nTPM: 189.7
1795 Male, age 51, unknown 213.9
2502 Female, age 75, unknown 190.1
1947 Male, age 18, unknown 165.0
Periaquaductal grey, dorsal
nTPM: 228.6
2850 Male, age 76, both hemispheres 322.9
1831 Male, age 72, unknown 207.8
1840 Male, age 53, unknown 202.1
2464 Female, age 72, unknown 181.5
Periaquaductal grey, lateral
nTPM: 291.6
2272 Male, age 74, both hemispheres 394.3
2140 Male, age 76, both hemispheres 273.1
2053 Male, age 18, unknown 207.4
Pretectal area
nTPM: 204.1
2273 Male, age 74, both hemispheres 373.2
2667 Female, age 75, unknown 219.3
2224 Female, age 72, unknown 217.8
2825 Male, age 18, unknown 202.1
1815 Male, age 53, unknown 186.8
1944 Female, age 72, unknown 184.1
2316 Male, age 76, right hemisphere 183.7
2407 Male, age 75, both hemispheres 176.5
1816 Male, age 51, unknown 174.9
1817 Female, age 42, unknown 165.0
2007 Male, age 72, unknown 161.3
Red nucleus
nTPM: 175.5
2785 Male, age 18, unknown 189.0
1865 Male, age 51, unknown 186.8
1904 Male, age 53, unknown 185.8
2227 Male, age 72, unknown 182.5
2769 Male, age 72, unknown 182.3
1954 Female, age 42, unknown 181.3
2503 Female, age 72, unknown 177.0
2823 Male, age 76, right hemisphere 174.5
2725 Female, age 75, unknown 169.9
2588 Male, age 74, left hemisphere 166.4
1821 Female, age 72, unknown 158.7
2584 Male, age 75, left hemisphere 151.8
Substantia nigra
nTPM: 165.4
2699 Male, age 18, unknown 188.7
1851 Male, age 51, unknown 173.4
1941 Male, age 53, unknown 167.1
2241 Male, age 72, unknown 166.1
2409 Female, age 72, unknown 166.1
2583 Male, age 75, right hemisphere 164.6
2590 Female, age 75, unknown 162.9
1889 Female, age 72, unknown 159.6
1916 Female, age 42, unknown 156.2
2665 Male, age 74, both hemispheres 149.0
Superior colliculus
nTPM: 197.1
1995 Male, age 72, unknown 255.4
1913 Female, age 42, unknown 238.1
2587 Male, age 74, left hemisphere 210.9
2261 Male, age 18, unknown 206.7
1796 Male, age 53, unknown 188.5
2087 Female, age 72, unknown 188.0
2668 Female, age 75, unknown 176.5
2664 Male, age 75, both hemispheres 175.8
1839 Male, age 51, unknown 169.5
1895 Male, age 76, right hemisphere 161.3
Ventral tegmental area
nTPM: 182.0
2021 Male, age 53, unknown 204.8
1915 Female, age 42, unknown 183.7
2223 Female, age 72, unknown 182.0
2410 Female, age 72, unknown 174.3
1942 Male, age 51, unknown 174.2
2218 Male, age 76, both hemispheres 173.2

MIDBRAIN - GTEx RNA-seqi
Average nTPM 208.0
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 208.0
Samples: 139

Max nTPM: 831.3
Min nTPM: 49.9
Std nTPM: 141.6
Median nTPM: 161.6
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 831.3
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 810.3
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 750.8
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 690.5
GTEX-1HSMO-0011-R2a-SM-CL553 60-69 years, male 668.2
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 605.0
GTEX-1H1DG-0011-R2a-SM-ADEIQ 70-79 years, male 449.0
GTEX-12WSH-0011-R2a-SM-5GU68 50-59 years, male 441.6
GTEX-1I1GS-0011-R2b-SM-CMKHG 60-69 years, male 436.9
GTEX-1IKJJ-0011-R2b-SM-ARZLJ 60-69 years, male 382.0
GTEX-1J8Q2-0011-R2b-SM-EAZ2X 60-69 years, male 370.6
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 93.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 93.2
FF:10158-103A5 76 years, female 93.2

MIDBRAIN - Pig RNA-seqi
Average nTPM 31.3
Pig sample Sample description nTPM
Midbrain
nTPM: 31.1
Samples: 4

Max nTPM: 65.4
Min nTPM: 15.8
Sample A Female 65.4
Sample B Female 22.4
Sample C Male 20.7
Sample D Male 15.8
Periaqueductal gray
nTPM: 31.3
Samples: 3

Max nTPM: 37.3
Min nTPM: 24.2
Sample B Female 24.2
Sample C Male 37.3
Sample D Male 32.5
Substantia nigra
nTPM: 29.4
Samples: 4

Max nTPM: 44.3
Min nTPM: 19.3
Sample A Female 44.3
Sample B Female 19.3
Sample C Male 26.1
Sample D Male 27.8
Superior colliculi
nTPM: 23.7
Samples: 4

Max nTPM: 28.1
Min nTPM: 20.8
Sample A Female 28.1
Sample B Female 20.8
Sample C Male 21.7
Sample D Male 24.2

MIDBRAIN - Mouse RNA-seqi
Average nTPM 113.0
Mouse sample Sample description nTPM
Midbrain
nTPM: 113.1
Samples: 4

Max nTPM: 127.4
Min nTPM: 100.9
Sample A Male 118.8
Sample B Male 100.9
Sample C Female 105.1
Sample D Female 127.4

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 7.4
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 7.4
68341262 Antisense, RP_041207_01_C02, Mouse strain C57BL/6J (56 days, male) 8.4
70813926 Antisense, RP_050725_02_F06, Mouse strain C57BL/6J (56 days, male) 6.5

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.