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BRAIN SPINAL CORD Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA MIDBRAIN
OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
SPINAL CORD - Expression summary
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:223.6 nTPM
HPA:223.6 nTPM
GTEx:309.8 nTPM
FANTOM5:59.4 Scaled Tags Per Million
Pig:49.2 nTPM

SPINAL CORD - HPA Brain RNA-seq
Max nTPM 223.6
Sample id Sample description nTPM
Cervical spinal cord, central gray
nTPM: 223.6
1981 Female, age 72, midline 260.9
2565 Male, age 75, midline 242.2
2048 Male, age 55, midline 215.9
2816 Male, age 47, midline 207.1
2194 Female, age 79, both hemispheres 191.8
Cervical spinal cord, dorsal horn
nTPM: 189.0
2173 Female, age 72, unknown 238.4
2296 Male, age 66, both hemispheres 201.7
2069 Male, age 47, both hemispheres 183.4
1877 Male, age 55, unknown 180.0
2721 Male, age 90, both hemispheres 171.1
2297 Male, age 75, both hemispheres 159.7
Cervical spinal cord, ventral horn
nTPM: 198.2
2098 Female, age 72, unknown 248.7
2295 Male, age 66, both hemispheres 204.9
2068 Male, age 55, unknown 192.6
2809 Male, age 90, both hemispheres 190.1
2820 Female, age 79, both hemispheres 184.2
2480 Male, age 75, both hemispheres 168.8

SPINAL CORD - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 309.8
GTEx sample id Sample description nTPM
Brain - Spinal cord (cervical c-1)
Average nTPM: 309.8
Samples: 159

Max nTPM: 652.8
Min nTPM: 74.9
Std nTPM: 134.5
Median nTPM: 296.9
GTEX-1EKGG-0011-R9a-SM-CMKFV 60-69 years, male 652.8
GTEX-14E7W-0011-R9a-SM-62LE6 70-79 years, male 633.3
GTEX-13FTY-0011-R9b-SM-5KM2U 40-49 years, female 608.2
GTEX-11ZVC-0011-R9a-SM-57WC5 50-59 years, female 605.7
GTEX-1KANB-0011-R9b-SM-EZ6MO 50-59 years, male 592.4
GTEX-12WSC-0011-R9a-SM-5GU4U 50-59 years, male 567.0
GTEX-1RQEC-0011-R9a-SM-EZ6N3 60-69 years, male 564.8
GTEX-14E6C-0011-R9a-SM-6EU33 40-49 years, male 564.4
GTEX-1GN2E-0011-R9b-SM-9WG7F 60-69 years, male 557.6
GTEX-13SLX-0011-R9b-SM-5SI6X 50-59 years, female 537.7
GTEX-1C6VS-0011-R9b-SM-9WG5W 60-69 years, male 536.1
GTEX-1HBPI-0011-R9b-SM-ARL76 50-59 years, male 535.9
GTEX-1B8L1-0011-R9b-SM-9WG5U 60-69 years, male 530.4
GTEX-13N1W-0011-R9b-SM-5MR4R 70-79 years, male 524.6
GTEX-YJ89-0011-R9a-SM-4SOK7 60-69 years, male 507.8
GTEX-13OVL-0011-R9a-SM-5P9GX 50-59 years, male 501.2
GTEX-WL46-0011-R9A-SM-3MJFP 50-59 years, male 500.2
GTEX-1LB8K-0011-R9a-SM-EZ6MP 50-59 years, male 494.7
GTEX-1EU9M-0011-R9a-SM-9WG61 60-69 years, male 492.7
GTEX-1IY9M-0011-R9b-SM-D3L8J 60-69 years, male 491.6
GTEX-11ZTS-0011-R9b-SM-DO93Q 60-69 years, female 488.2
GTEX-1HGF4-0011-R9a-SM-ADEH9 60-69 years, male 483.1
GTEX-1IGQW-0011-R9b-SM-D4P25 60-69 years, male 479.7
GTEX-1I1GS-0011-R9b-SM-CMKHF 60-69 years, male 478.6
GTEX-13FLV-0011-R9b-SM-5L3DA 50-59 years, male 466.6
GTEX-1F88F-0011-R9b-SM-9WG7L 60-69 years, female 461.8
GTEX-1H3O1-0011-R9b-SM-CM2SQ 60-69 years, male 461.6
GTEX-13FXS-0011-R9a-SM-5K7UI 50-59 years, male 458.0
GTEX-1LSNL-0011-R9b-SM-EYYWK 50-59 years, male 453.7
GTEX-1BAJH-0011-R9b-SM-7EPIQ 70-79 years, male 452.5
GTEX-1JMLX-0011-R9a-SM-EYYXM 50-59 years, male 444.3
GTEX-1LVA9-0011-R9a-SM-EYYWF 50-59 years, male 432.0
GTEX-T6MN-0011-R9A-SM-32QOZ 50-59 years, male 430.6
GTEX-1J8EW-0011-R9b-SM-D4P2F 60-69 years, female 423.6
GTEX-139T4-0011-R9b-SM-5HL6S 50-59 years, female 415.7
GTEX-1ICLZ-0011-R9a-SM-ARL7E 60-69 years, male 404.6
GTEX-1HBPH-0011-R9a-SM-CMKH3 40-49 years, female 401.5
GTEX-1I1GV-0011-R9b-SM-ARZLE 60-69 years, male 401.4
GTEX-14BIL-0011-R9a-SM-5SI7A 50-59 years, male 398.2
GTEX-131YS-0011-R9b-SM-5EQLY 60-69 years, female 396.5
GTEX-1F6I4-0011-R9a-SM-CMKFU 60-69 years, male 395.2
GTEX-131XW-0011-R9a-SM-5N9EO 50-59 years, female 390.5
GTEX-XLM4-0011-R9A-SM-4AT45 60-69 years, male 386.6
GTEX-147GR-0011-R9a-SM-5S2UY 60-69 years, male 384.3
GTEX-11ZUS-0011-R9b-SM-5BC76 30-39 years, male 382.5
GTEX-1IDJH-0011-R9a-SM-ADEIN 70-79 years, male 382.0
GTEX-13CZV-0011-R9a-SM-5LZXT 60-69 years, male 369.2
GTEX-1GZ2Q-0011-R9a-SM-9WG7A 40-49 years, male 364.2
GTEX-1A8G7-0011-R9b-SM-7IGQH 60-69 years, male 360.2
GTEX-1GN1U-0011-R9b-SM-CMKFW 50-59 years, female 358.0
GTEX-1GF9V-0011-R9a-SM-CL53K 60-69 years, male 357.0
GTEX-1GTWX-0011-R9a-SM-ADEH4 60-69 years, male 356.9
GTEX-14BIN-0011-R9a-SM-5SI76 50-59 years, female 356.8
GTEX-1EH9U-0011-R9b-SM-9WG5T 60-69 years, male 353.5
GTEX-11UD2-0011-R9b-SM-DO926 50-59 years, male 352.6
GTEX-139UW-0011-R9b-SM-5LZYT 60-69 years, male 352.3
GTEX-ZVZQ-0011-R9a-SM-51MRH 60-69 years, female 351.2
GTEX-1EWIQ-0011-R9a-SM-ARL8L 70-79 years, female 342.8
GTEX-16Z82-0011-R9a-SM-7DUFA 60-69 years, male 342.7
GTEX-11EMC-0011-R9b-SM-DO921 60-69 years, female 339.8
GTEX-1GF9W-0011-R9b-SM-9WG7J 60-69 years, male 338.7
GTEX-13NZA-0011-R9b-SM-5MR5I 60-69 years, male 338.3
GTEX-12WSH-0011-R9b-SM-5LZUG 50-59 years, male 336.4
GTEX-11WQK-0011-R9b-SM-5BC6N 50-59 years, male 335.7
GTEX-13NYB-0011-R9b-SM-5MR5P 40-49 years, male 329.5
GTEX-1GZHY-0011-R9a-SM-9WG5R 50-59 years, female 329.5
GTEX-1H1DF-0011-R9b-SM-CM2RN 40-49 years, female 326.0
GTEX-1A32A-0011-R9b-SM-7MGXD 50-59 years, female 323.8
GTEX-14ABY-0011-R9a-SM-5PNZK 50-59 years, male 323.7
GTEX-1CAV2-0011-R9b-SM-9WG5M 40-49 years, female 321.1
GTEX-T5JC-0011-R9A-SM-32PLV 20-29 years, male 312.1
GTEX-1I19N-0011-R9a-SM-CMKHN 70-79 years, male 305.0
GTEX-1J8JJ-0011-R9a-SM-ACKVF 60-69 years, female 303.9
GTEX-145LU-0011-R9b-SM-5SI66 50-59 years, male 303.8
GTEX-13VXU-0011-R9b-SM-5SI73 50-59 years, male 301.7
GTEX-1OJC4-0011-R9a-SM-EZ6N1 50-59 years, female 300.3
GTEX-1B933-0011-R9a-SM-79OOR 50-59 years, female 299.4
GTEX-1GZ4I-0011-R9b-SM-B2LY8 50-59 years, male 297.7
GTEX-13QJC-0011-R9b-SM-5PNX3 60-69 years, female 297.3
GTEX-1C6VQ-0011-R9a-SM-7SB85 50-59 years, male 296.9
GTEX-1HR98-0011-R9b-SM-ARL79 60-69 years, male 295.7
GTEX-13N2G-0011-R9b-SM-5MR4E 60-69 years, male 295.6
GTEX-11ONC-0011-R9b-SM-5NQ8J 60-69 years, male 294.9
GTEX-1R46S-0011-R9a-SM-EZ6N7 60-69 years, female 293.0
GTEX-Q2AG-0011-R9A-SM-2HMJ6 40-49 years, female 290.9
GTEX-ZE9C-0011-R9a-SM-4WWCY 60-69 years, male 289.0
GTEX-14JIY-0011-R9a-SM-6EU34 60-69 years, male 287.2
GTEX-1H3NZ-0011-R9a-SM-ADEH7 60-69 years, male 283.3
GTEX-13S7M-0011-R9a-SM-5O9DW 60-69 years, female 276.3
GTEX-RU72-0011-R9A-SM-2TF67 50-59 years, female 274.7
GTEX-148VJ-0011-R9b-SM-5SI77 70-79 years, male 273.1
GTEX-18464-0011-R9a-SM-731BK 50-59 years, male 269.9
GTEX-14PJM-0011-R9b-SM-6EU35 50-59 years, female 269.7
GTEX-15G19-0011-R9b-SM-7KUEE 60-69 years, male 269.1
GTEX-13RTJ-0011-R9a-SM-5Q5AY 60-69 years, male 268.1
GTEX-1HFI6-0011-R9b-SM-CMKH4 40-49 years, male 267.3
GTEX-1CB4H-0011-R9a-SM-CKZNL 60-69 years, female 262.8
GTEX-13PVQ-0011-R9b-SM-5LU3B 50-59 years, male 256.8
GTEX-13O1R-0011-R9b-SM-5KM33 60-69 years, male 252.7
GTEX-1JJ6O-0011-R9a-SM-EYYXP 60-69 years, male 252.6
GTEX-13PLJ-0011-R9b-SM-5O9DV 60-69 years, female 242.1
GTEX-PWO3-0011-R9A-SM-EVR2V 60-69 years, female 241.8
GTEX-1MJK2-0011-R9b-SM-EZ6MZ 50-59 years, male 241.0
GTEX-1GN73-0011-R9a-SM-CKZO5 60-69 years, male 239.5
GTEX-QDT8-0011-R9A-SM-CYPRD 30-39 years, female 239.5
GTEX-11GSP-0011-R9b-SM-5NQ77 60-69 years, female 238.8
GTEX-1H23P-0011-R9a-SM-CM2T1 60-69 years, male 232.7
GTEX-14BIM-0011-R9a-SM-6LLJL 60-69 years, female 231.9
GTEX-QVUS-0011-R9A-SM-3GIJA 60-69 years, female 231.0
GTEX-ZF28-0011-R9a-SM-4WWDY 60-69 years, male 221.4
GTEX-15DCD-0011-R9b-SM-7KUED 70-79 years, female 220.9
GTEX-OHPN-0011-R9A-SM-5TDEJ 60-69 years, female 220.2
GTEX-1I1CD-0011-R9a-SM-CMKHB 60-69 years, female 220.0
GTEX-14BMV-0011-R9b-SM-5ZZUA 50-59 years, male 217.7
GTEX-YFC4-0011-R9a-SM-4SOK4 40-49 years, female 217.0
GTEX-15ER7-0011-R9b-SM-6PALF 20-29 years, female 213.1
GTEX-15DYW-0011-R9b-SM-6PALB 60-69 years, female 212.5
GTEX-NPJ7-0011-R9a-SM-2TC5R 60-69 years, female 208.7
GTEX-12126-0011-R9b-SM-5BC6P 20-29 years, male 208.1
GTEX-12WSD-0011-R9a-SM-5GU6W 60-69 years, female 201.3
GTEX-1CAMQ-0011-R9a-SM-9WG5Z 40-49 years, male 201.0
GTEX-1HSMO-0011-R9b-SM-CM2T2 60-69 years, male 200.5
GTEX-R55E-0011-R9A-SM-2TC6C 20-29 years, male 198.4
GTEX-1H1ZS-0011-R9a-SM-CM2SO 70-79 years, male 195.1
GTEX-14PJO-0011-R9b-SM-62LE9 60-69 years, male 192.0
GTEX-NL4W-0011-R9a-SM-2I3G1 50-59 years, male 191.9
GTEX-1IKJJ-0011-R9a-SM-ARZLI 60-69 years, male 189.8
GTEX-1I1HK-0011-R9a-SM-CMKHK 60-69 years, male 188.9
GTEX-XMD1-0011-R9A-SM-4AT49 60-69 years, male 186.0
GTEX-1F52S-0011-R9a-SM-9WG62 60-69 years, female 183.8
GTEX-13OVJ-0011-R9b-SM-5L3GD 50-59 years, female 178.2
GTEX-13PL6-0011-R9b-SM-5O9CH 40-49 years, female 173.9
GTEX-1H1DG-0011-R9b-SM-ACKVB 70-79 years, male 172.9
GTEX-TSE9-0011-R9A-SM-3DB7Q 60-69 years, female 171.9
GTEX-17EVQ-0011-R9b-SM-79OJY 70-79 years, male 171.8
GTEX-RNOR-0011-R9A-SM-2TF52 50-59 years, female 168.6
GTEX-13X6I-0011-R9b-SM-5PNZJ 60-69 years, male 160.4
GTEX-ZAB4-0011-R9a-SM-4SOKG 40-49 years, male 159.6
GTEX-1192X-0011-R9b-SM-DO934 50-59 years, male 155.6
GTEX-14PN4-0011-R9a-SM-6LLH9 50-59 years, male 155.2
GTEX-13NYS-0011-R9b-SM-5MR44 60-69 years, male 155.0
GTEX-1HBPM-0011-R9b-SM-ARL7C 60-69 years, female 151.0
GTEX-1JN1M-0011-R9a-SM-EZ6MR 60-69 years, female 149.9
GTEX-13CIG-0011-R9a-SM-5K7VU 50-59 years, male 149.2
GTEX-OXRO-0011-R9A-SM-3NB1X 60-69 years, female 147.5
GTEX-16XZZ-0011-R9b-SM-7DHKX 60-69 years, male 144.5
GTEX-16NPV-0011-R9b-SM-79ONF 50-59 years, female 141.7
GTEX-13SLW-0011-R9a-SM-5O9BT 70-79 years, male 129.5
GTEX-13JUV-0011-R9a-SM-5LZX3 40-49 years, female 120.5
GTEX-QVJO-0011-R9A-SM-2S1QH 60-69 years, female 113.7
GTEX-1H2FU-0011-R9b-SM-CE6S4 60-69 years, female 107.9
GTEX-1LVAO-0011-R9a-SM-EZ6MY 60-69 years, male 102.8
GTEX-15EO6-0011-R9a-SM-6PALG 50-59 years, male 97.0
GTEX-15DDE-0011-R9b-SM-6M46U 50-59 years, female 93.5
GTEX-15CHQ-0011-R9a-SM-6LLHX 60-69 years, male 88.8
GTEX-1J1OQ-0011-R9b-SM-ARZMK 40-49 years, female 82.5
GTEX-NPJ8-0011-R9a-SM-2YUN5 40-49 years, male 77.0
GTEX-11DZ1-0011-R9a-SM-DO933 50-59 years, male 76.3
GTEX-13OW5-0011-R9b-SM-5O9CL 60-69 years, male 74.9
Show allShow less

SPINAL CORD - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 59.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Spinal cord
Scaled Tags Per Million: 59.4
FF:10181-103D1 60 years, female 89.2
FF:10159-103A6 76 years, female 29.6

SPINAL CORD - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 49.2
Pig sample Sample description nTPM
Dorsal spinal cord
nTPM: 32.2
Samples: 4

Max nTPM: 38.7
Min nTPM: 26.5
Sample A Female 34.7
Sample B Female 26.5
Sample C Male 38.7
Sample D Male 29.0
Ventral spinal cord
nTPM: 49.2
Samples: 4

Max nTPM: 52.7
Min nTPM: 43.4
Sample A Female 48.0
Sample B Female 52.7
Sample C Male 52.5
Sample D Male 43.4

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