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TISSUE PRIMARY DATA SPINAL CORD Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM ENDOMETRIUM
EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MEDULLA OBLONGATA MIDBRAIN NASOPHARYNX ORAL MUCOSA
OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PONS PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE SMOOTH MUSCLE
SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THALAMUS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA WHITE MATTER
ANTIBODIES
AND
VALIDATION
Dictionary
Tissue proteome
SPINAL CORD - Expression summary
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:25.8 nTPM
HPA:25.8 nTPM
GTEx:321.0 nTPM
FANTOM5:407.6 Scaled Tags Per Million
Pig:500.8 nTPM

SPINAL CORD - HPA Brain RNA-seq
Max nTPM 25.8
Sample id Sample description nTPM
Cervical spinal cord, central gray
nTPM: 0.5
2194 Female, age 79, both hemispheres 2.6
1981 Female, age 72, midline 0.0
2048 Male, age 55, midline 0.0
2565 Male, age 75, midline 0.0
2816 Male, age 47, midline 0.0
Cervical spinal cord, dorsal horn
nTPM: 25.8
2297 Male, age 75, both hemispheres 155.2
1877 Male, age 55, unknown 0.0
2069 Male, age 47, both hemispheres 0.0
2173 Female, age 72, unknown 0.0
2296 Male, age 66, both hemispheres 0.0
2721 Male, age 90, both hemispheres 0.0
Cervical spinal cord, ventral horn
nTPM: 20.3
2820 Female, age 79, both hemispheres 122.2
2068 Male, age 55, unknown 0.0
2098 Female, age 72, unknown 0.0
2295 Male, age 66, both hemispheres 0.0
2480 Male, age 75, both hemispheres 0.0
2809 Male, age 90, both hemispheres 0.0

SPINAL CORD - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 321.0
GTEx sample id Sample description nTPM
Brain - Spinal cord (cervical c-1)
Average nTPM: 321.0
Samples: 159

Max nTPM: 946.8
Min nTPM: 136.1
Std nTPM: 111.3
Median nTPM: 299.6
GTEX-1GN73-0011-R9a-SM-CKZO5 60-69 years, male 946.8
GTEX-1IKJJ-0011-R9a-SM-ARZLI 60-69 years, male 859.1
GTEX-QVJO-0011-R9A-SM-2S1QH 60-69 years, female 735.1
GTEX-1ICLZ-0011-R9a-SM-ARL7E 60-69 years, male 676.4
GTEX-13OVJ-0011-R9b-SM-5L3GD 50-59 years, female 591.9
GTEX-R55E-0011-R9A-SM-2TC6C 20-29 years, male 572.6
GTEX-1B933-0011-R9a-SM-79OOR 50-59 years, female 518.0
GTEX-1LVA9-0011-R9a-SM-EYYWF 50-59 years, male 475.3
GTEX-1IGQW-0011-R9b-SM-D4P25 60-69 years, male 469.9
GTEX-1LVAO-0011-R9a-SM-EZ6MY 60-69 years, male 467.2
GTEX-1EKGG-0011-R9a-SM-CMKFV 60-69 years, male 465.8
GTEX-14BIM-0011-R9a-SM-6LLJL 60-69 years, female 465.7
GTEX-1HFI6-0011-R9b-SM-CMKH4 40-49 years, male 450.7
GTEX-13NYB-0011-R9b-SM-5MR5P 40-49 years, male 443.7
GTEX-1GZ4I-0011-R9b-SM-B2LY8 50-59 years, male 427.4
GTEX-1F6I4-0011-R9a-SM-CMKFU 60-69 years, male 425.5
GTEX-1OJC4-0011-R9a-SM-EZ6N1 50-59 years, female 424.6
GTEX-NPJ8-0011-R9a-SM-2YUN5 40-49 years, male 420.9
GTEX-13SLX-0011-R9b-SM-5SI6X 50-59 years, female 417.3
GTEX-13VXU-0011-R9b-SM-5SI73 50-59 years, male 408.1
GTEX-1HGF4-0011-R9a-SM-ADEH9 60-69 years, male 406.8
GTEX-14JIY-0011-R9a-SM-6EU34 60-69 years, male 403.4
GTEX-13NYS-0011-R9b-SM-5MR44 60-69 years, male 400.8
GTEX-11GSP-0011-R9b-SM-5NQ77 60-69 years, female 397.7
GTEX-1H3O1-0011-R9b-SM-CM2SQ 60-69 years, male 396.8
GTEX-1J8EW-0011-R9b-SM-D4P2F 60-69 years, female 396.1
GTEX-1JN1M-0011-R9a-SM-EZ6MR 60-69 years, female 394.6
GTEX-12WSD-0011-R9a-SM-5GU6W 60-69 years, female 388.7
GTEX-14BMV-0011-R9b-SM-5ZZUA 50-59 years, male 387.6
GTEX-13JUV-0011-R9a-SM-5LZX3 40-49 years, female 387.5
GTEX-13X6I-0011-R9b-SM-5PNZJ 60-69 years, male 386.6
GTEX-1KANB-0011-R9b-SM-EZ6MO 50-59 years, male 384.8
GTEX-12126-0011-R9b-SM-5BC6P 20-29 years, male 380.2
GTEX-1GZ2Q-0011-R9a-SM-9WG7A 40-49 years, male 379.3
GTEX-13FLV-0011-R9b-SM-5L3DA 50-59 years, male 378.5
GTEX-1192X-0011-R9b-SM-DO934 50-59 years, male 374.9
GTEX-13FTY-0011-R9b-SM-5KM2U 40-49 years, female 371.2
GTEX-1I1GS-0011-R9b-SM-CMKHF 60-69 years, male 367.8
GTEX-1RQEC-0011-R9a-SM-EZ6N3 60-69 years, male 363.7
GTEX-1MJK2-0011-R9b-SM-EZ6MZ 50-59 years, male 362.8
GTEX-1LB8K-0011-R9a-SM-EZ6MP 50-59 years, male 362.5
GTEX-11ZUS-0011-R9b-SM-5BC76 30-39 years, male 360.6
GTEX-11ZTS-0011-R9b-SM-DO93Q 60-69 years, female 354.5
GTEX-1IDJH-0011-R9a-SM-ADEIN 70-79 years, male 353.7
GTEX-1J8JJ-0011-R9a-SM-ACKVF 60-69 years, female 352.0
GTEX-ZVZQ-0011-R9a-SM-51MRH 60-69 years, female 350.4
GTEX-14E7W-0011-R9a-SM-62LE6 70-79 years, male 348.8
GTEX-1I1CD-0011-R9a-SM-CMKHB 60-69 years, female 348.2
GTEX-QVUS-0011-R9A-SM-3GIJA 60-69 years, female 343.0
GTEX-1HBPI-0011-R9b-SM-ARL76 50-59 years, male 342.7
GTEX-1GTWX-0011-R9a-SM-ADEH4 60-69 years, male 337.8
GTEX-1GN2E-0011-R9b-SM-9WG7F 60-69 years, male 337.5
GTEX-1A8G7-0011-R9b-SM-7IGQH 60-69 years, male 335.6
GTEX-1LSNL-0011-R9b-SM-EYYWK 50-59 years, male 335.2
GTEX-1I19N-0011-R9a-SM-CMKHN 70-79 years, male 332.6
GTEX-148VJ-0011-R9b-SM-5SI77 70-79 years, male 331.9
GTEX-1IY9M-0011-R9b-SM-D3L8J 60-69 years, male 331.7
GTEX-131XW-0011-R9a-SM-5N9EO 50-59 years, female 329.0
GTEX-RNOR-0011-R9A-SM-2TF52 50-59 years, female 328.3
GTEX-131YS-0011-R9b-SM-5EQLY 60-69 years, female 327.2
GTEX-1HBPH-0011-R9a-SM-CMKH3 40-49 years, female 325.5
GTEX-13O1R-0011-R9b-SM-5KM33 60-69 years, male 323.0
GTEX-13OVL-0011-R9a-SM-5P9GX 50-59 years, male 322.7
GTEX-1EU9M-0011-R9a-SM-9WG61 60-69 years, male 320.8
GTEX-YFC4-0011-R9a-SM-4SOK4 40-49 years, female 320.3
GTEX-12WSC-0011-R9a-SM-5GU4U 50-59 years, male 319.6
GTEX-NL4W-0011-R9a-SM-2I3G1 50-59 years, male 315.2
GTEX-11WQK-0011-R9b-SM-5BC6N 50-59 years, male 313.9
GTEX-1JJ6O-0011-R9a-SM-EYYXP 60-69 years, male 311.9
GTEX-13SLW-0011-R9a-SM-5O9BT 70-79 years, male 311.7
GTEX-11UD2-0011-R9b-SM-DO926 50-59 years, male 311.6
GTEX-1B8L1-0011-R9b-SM-9WG5U 60-69 years, male 310.0
GTEX-Q2AG-0011-R9A-SM-2HMJ6 40-49 years, female 307.6
GTEX-14PJM-0011-R9b-SM-6EU35 50-59 years, female 306.4
GTEX-1HSMO-0011-R9b-SM-CM2T2 60-69 years, male 304.8
GTEX-1GZHY-0011-R9a-SM-9WG5R 50-59 years, female 303.3
GTEX-11ZVC-0011-R9a-SM-57WC5 50-59 years, female 302.7
GTEX-15DDE-0011-R9b-SM-6M46U 50-59 years, female 301.6
GTEX-1GN1U-0011-R9b-SM-CMKFW 50-59 years, female 300.5
GTEX-1HR98-0011-R9b-SM-ARL79 60-69 years, male 299.6
GTEX-1A32A-0011-R9b-SM-7MGXD 50-59 years, female 298.4
GTEX-1EWIQ-0011-R9a-SM-ARL8L 70-79 years, female 297.8
GTEX-1I1GV-0011-R9b-SM-ARZLE 60-69 years, male 297.4
GTEX-11DZ1-0011-R9a-SM-DO933 50-59 years, male 294.9
GTEX-145LU-0011-R9b-SM-5SI66 50-59 years, male 294.3
GTEX-12WSH-0011-R9b-SM-5LZUG 50-59 years, male 293.2
GTEX-11EMC-0011-R9b-SM-DO921 60-69 years, female 293.1
GTEX-1H1ZS-0011-R9a-SM-CM2SO 70-79 years, male 292.6
GTEX-11ONC-0011-R9b-SM-5NQ8J 60-69 years, male 290.7
GTEX-14PN4-0011-R9a-SM-6LLH9 50-59 years, male 290.6
GTEX-PWO3-0011-R9A-SM-EVR2V 60-69 years, female 290.6
GTEX-1H1DF-0011-R9b-SM-CM2RN 40-49 years, female 286.2
GTEX-1JMLX-0011-R9a-SM-EYYXM 50-59 years, male 280.9
GTEX-1GF9V-0011-R9a-SM-CL53K 60-69 years, male 280.4
GTEX-139T4-0011-R9b-SM-5HL6S 50-59 years, female 280.0
GTEX-1H3NZ-0011-R9a-SM-ADEH7 60-69 years, male 278.6
GTEX-1H1DG-0011-R9b-SM-ACKVB 70-79 years, male 277.5
GTEX-13N1W-0011-R9b-SM-5MR4R 70-79 years, male 276.7
GTEX-1C6VQ-0011-R9a-SM-7SB85 50-59 years, male 276.1
GTEX-1CB4H-0011-R9a-SM-CKZNL 60-69 years, female 275.2
GTEX-1F88F-0011-R9b-SM-9WG7L 60-69 years, female 275.1
GTEX-1R46S-0011-R9a-SM-EZ6N7 60-69 years, female 272.5
GTEX-16Z82-0011-R9a-SM-7DUFA 60-69 years, male 270.5
GTEX-14BIN-0011-R9a-SM-5SI76 50-59 years, female 270.2
GTEX-1CAV2-0011-R9b-SM-9WG5M 40-49 years, female 270.2
GTEX-T6MN-0011-R9A-SM-32QOZ 50-59 years, male 266.6
GTEX-1I1HK-0011-R9a-SM-CMKHK 60-69 years, male 265.5
GTEX-13NZA-0011-R9b-SM-5MR5I 60-69 years, male 265.3
GTEX-13N2G-0011-R9b-SM-5MR4E 60-69 years, male 263.2
GTEX-QDT8-0011-R9A-SM-CYPRD 30-39 years, female 263.1
GTEX-WL46-0011-R9A-SM-3MJFP 50-59 years, male 262.1
GTEX-14ABY-0011-R9a-SM-5PNZK 50-59 years, male 261.8
GTEX-XLM4-0011-R9A-SM-4AT45 60-69 years, male 261.4
GTEX-14E6C-0011-R9a-SM-6EU33 40-49 years, male 260.1
GTEX-TSE9-0011-R9A-SM-3DB7Q 60-69 years, female 259.3
GTEX-1J1OQ-0011-R9b-SM-ARZMK 40-49 years, female 256.1
GTEX-17EVQ-0011-R9b-SM-79OJY 70-79 years, male 255.4
GTEX-13PVQ-0011-R9b-SM-5LU3B 50-59 years, male 254.6
GTEX-16NPV-0011-R9b-SM-79ONF 50-59 years, female 253.8
GTEX-147GR-0011-R9a-SM-5S2UY 60-69 years, male 253.7
GTEX-1F52S-0011-R9a-SM-9WG62 60-69 years, female 253.4
GTEX-RU72-0011-R9A-SM-2TF67 50-59 years, female 252.0
GTEX-13PLJ-0011-R9b-SM-5O9DV 60-69 years, female 251.4
GTEX-NPJ7-0011-R9a-SM-2TC5R 60-69 years, female 249.6
GTEX-YJ89-0011-R9a-SM-4SOK7 60-69 years, male 246.9
GTEX-13PL6-0011-R9b-SM-5O9CH 40-49 years, female 246.3
GTEX-1BAJH-0011-R9b-SM-7EPIQ 70-79 years, male 242.6
GTEX-XMD1-0011-R9A-SM-4AT49 60-69 years, male 238.9
GTEX-139UW-0011-R9b-SM-5LZYT 60-69 years, male 237.9
GTEX-13CIG-0011-R9a-SM-5K7VU 50-59 years, male 237.8
GTEX-1C6VS-0011-R9b-SM-9WG5W 60-69 years, male 237.3
GTEX-1CAMQ-0011-R9a-SM-9WG5Z 40-49 years, male 236.8
GTEX-13FXS-0011-R9a-SM-5K7UI 50-59 years, male 235.2
GTEX-T5JC-0011-R9A-SM-32PLV 20-29 years, male 233.9
GTEX-1GF9W-0011-R9b-SM-9WG7J 60-69 years, male 231.8
GTEX-15ER7-0011-R9b-SM-6PALF 20-29 years, female 231.1
GTEX-15G19-0011-R9b-SM-7KUEE 60-69 years, male 231.0
GTEX-15DCD-0011-R9b-SM-7KUED 70-79 years, female 228.7
GTEX-13QJC-0011-R9b-SM-5PNX3 60-69 years, female 226.7
GTEX-1EH9U-0011-R9b-SM-9WG5T 60-69 years, male 226.1
GTEX-ZE9C-0011-R9a-SM-4WWCY 60-69 years, male 225.6
GTEX-1HBPM-0011-R9b-SM-ARL7C 60-69 years, female 224.0
GTEX-15EO6-0011-R9a-SM-6PALG 50-59 years, male 223.6
GTEX-13RTJ-0011-R9a-SM-5Q5AY 60-69 years, male 223.1
GTEX-13CZV-0011-R9a-SM-5LZXT 60-69 years, male 221.8
GTEX-18464-0011-R9a-SM-731BK 50-59 years, male 219.7
GTEX-ZF28-0011-R9a-SM-4WWDY 60-69 years, male 217.2
GTEX-ZAB4-0011-R9a-SM-4SOKG 40-49 years, male 212.7
GTEX-OXRO-0011-R9A-SM-3NB1X 60-69 years, female 210.7
GTEX-14PJO-0011-R9b-SM-62LE9 60-69 years, male 203.5
GTEX-13S7M-0011-R9a-SM-5O9DW 60-69 years, female 200.2
GTEX-13OW5-0011-R9b-SM-5O9CL 60-69 years, male 195.2
GTEX-15CHQ-0011-R9a-SM-6LLHX 60-69 years, male 194.8
GTEX-14BIL-0011-R9a-SM-5SI7A 50-59 years, male 193.8
GTEX-15DYW-0011-R9b-SM-6PALB 60-69 years, female 192.1
GTEX-1H23P-0011-R9a-SM-CM2T1 60-69 years, male 181.6
GTEX-16XZZ-0011-R9b-SM-7DHKX 60-69 years, male 168.7
GTEX-1H2FU-0011-R9b-SM-CE6S4 60-69 years, female 166.4
GTEX-OHPN-0011-R9A-SM-5TDEJ 60-69 years, female 136.1
Show allShow less

SPINAL CORD - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 407.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Spinal cord
Scaled Tags Per Million: 407.6
FF:10181-103D1 60 years, female 595.9
FF:10159-103A6 76 years, female 219.2

SPINAL CORD - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 500.8
Pig sample Sample description nTPM
Dorsal spinal cord
nTPM: 500.8
Samples: 4

Max nTPM: 755.7
Min nTPM: 283.1
Sample A Female 755.7
Sample B Female 367.7
Sample C Male 283.1
Sample D Male 596.8
Ventral spinal cord
nTPM: 500.5
Samples: 4

Max nTPM: 573.1
Min nTPM: 449.3
Sample A Female 573.1
Sample B Female 494.1
Sample C Male 485.6
Sample D Male 449.3

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