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BRAIN PONS Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA MIDBRAIN
OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
Pons
PONS - Expression summary
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:259.6 nTPM
HPA:259.6 nTPM
FANTOM5:240.5 Scaled Tags Per Million
Pig:104.4 nTPM
Allen mouse:1.0 Expression energy

PONS - HPA Brain RNA-seq
Max nTPM 259.6
Sample id Sample description nTPM
Anterior cochlear nucleus, ventral
nTPM: 248.7
2090 Male, age 80, both hemispheres 252.6
2188 Female, age 91, both hemispheres 251.1
1984 Male, age 76, both hemispheres 245.5
2301 Female, age 85, both hemispheres 245.4
Dorsal cochlear nucleus
nTPM: 251.9
2370 Male, age 61, both hemispheres 258.1
2378 Male, age 80, both hemispheres 252.4
2187 Female, age 91, both hemispheres 251.1
2802 Male, age 74, right hemisphere 249.7
2058 Male, age 76, both hemispheres 248.2
Dorsal tegmental nucleus
nTPM: 259.6
2358 Male, age 61, both hemispheres 285.3
2083 Male, age 80, both hemispheres 255.2
1936 Male, age 76, left hemisphere 251.8
2326 Male, age 74, both hemispheres 246.2
Dorsolateral tegmental area
nTPM: 255.2
2337 Male, age 61, both hemispheres 267.8
2654 Male, age 80, both hemispheres 255.3
2360 Male, age 74, both hemispheres 251.8
2141 Male, age 76, both hemispheres 250.7
2751 Female, age 85, both hemispheres 250.4
Kolliker-Fuse nucleus
nTPM: 256.3
2315 Male, age 76, right hemisphere 261.7
2793 Female, age 91, left hemisphere 255.9
2163 Male, age 80, both hemispheres 251.3
Lateral lemniscal nuclei
nTPM: 250.0
2746 Female, age 85, left hemisphere 256.1
2169 Male, age 76, both hemispheres 251.1
2453 Male, age 74, right hemisphere 250.3
2036 Male, age 80, both hemispheres 250.1
2320 Female, age 91, left hemisphere 242.2
Lateral parabrachial nucleus
nTPM: 254.3
2790 Male, age 61, both hemispheres 256.3
2139 Female, age 85, right hemisphere 255.3
2792 Male, age 76, both hemispheres 253.3
2013 Male, age 80, both hemispheres 252.4
Lateral vestibular nucleus
nTPM: 251.3
2184 Male, age 76, both hemispheres 251.9
2311 Male, age 80, both hemispheres 250.7
Locus coeruleus
nTPM: 253.3
2720 Male, age 74, both hemispheres 256.7
2123 Female, age 91, both hemispheres 256.6
1980 Male, age 76, both hemispheres 252.7
2014 Male, age 55, unknown 252.2
2317 Female, age 72, unknown 252.0
2162 Male, age 80, both hemispheres 251.5
2788 Male, age 74, unknown 251.5
Medial olivary nucleus
nTPM: 257.7
1962 Male, age 76, both hemispheres 259.1
1943 Male, age 61, both hemispheres 258.5
2851 Male, age 80, both hemispheres 257.9
2138 Female, age 91, both hemispheres 255.3
Medial parabrachial nucleus
nTPM: 252.9
2170 Female, age 91, both hemispheres 257.0
2156 Male, age 61, both hemispheres 255.2
2854 Male, age 80, both hemispheres 255.2
2786 Male, age 76, both hemispheres 250.6
2463 Female, age 85, right hemisphere 246.4
Medial periolivary nuclei
nTPM: 250.8
2791 Male, age 74, right hemisphere 255.6
2171 Female, age 85, both hemispheres 251.7
2063 Male, age 76, both hemispheres 251.5
2081 Male, age 80, both hemispheres 250.2
2458 Female, age 91, both hemispheres 244.9
Motor facial nucleus
nTPM: 249.8
2697 Female, age 85, both hemispheres 255.7
2365 Male, age 74, right hemisphere 254.5
2062 Male, age 76, both hemispheres 250.1
2126 Male, age 61, both hemispheres 248.7
2795 Female, age 91, both hemispheres 246.9
2327 Male, age 80, both hemispheres 242.8
Motor trigeminal nucleus
nTPM: 249.3
2335 Male, age 61, both hemispheres 254.5
2079 Male, age 80, both hemispheres 250.2
2560 Male, age 74, both hemispheres 249.5
2309 Male, age 76, both hemispheres 248.2
2321 Female, age 91, both hemispheres 244.3
Nuclei of the trapezoid body
nTPM: 249.6
1983 Male, age 76, both hemispheres 254.3
2735 Female, age 85, both hemispheres 252.6
2159 Male, age 61, both hemispheres 248.7
2166 Male, age 80, both hemispheres 248.2
2368 Female, age 91, both hemispheres 243.9
Paramedian reticular nucleus
nTPM: 253.8
2050 Female, age 85, both hemispheres 256.8
2052 Male, age 76, both hemispheres 254.7
2313 Male, age 61, both hemispheres 252.7
2057 Male, age 80, both hemispheres 251.2
Pontine nuclei
nTPM: 251.0
2787 Female, age 85, both hemispheres 258.1
1863 Male, age 55, unknown 257.4
2115 Male, age 80, left hemisphere 250.9
2109 Female, age 72, unknown 250.6
2727 Male, age 61, right hemisphere 249.0
1968 Male, age 76, left hemisphere 248.6
2454 Male, age 74, left hemisphere 248.3
2319 Female, age 91, both hemispheres 244.9
Pontine raphe nucleus
nTPM: 251.5
2853 Male, age 76, midline 252.9
2122 Female, age 85, midline 250.1
Posteroventral cochlear nucleus
nTPM: 251.9
2371 Male, age 61, both hemispheres 257.6
2341 Male, age 80, both hemispheres 255.2
2135 Female, age 91, both hemispheres 251.0
2070 Male, age 76, both hemispheres 249.3
2752 Female, age 85, both hemispheres 246.2
Principal sensory trigeminal nucleus
nTPM: 248.5
2158 Male, age 61, both hemispheres 251.5
2008 Male, age 80, left hemisphere 248.1
2324 Male, age 76, both hemispheres 248.0
2367 Female, age 91, left hemisphere 246.3
Reticular pontine nucleus, caudal
nTPM: 249.2
2092 Male, age 76, both hemispheres 251.4
2559 Male, age 74, both hemispheres 251.1
2457 Female, age 91, both hemispheres 248.8
2332 Male, age 80, right hemisphere 245.3
Reticular pontine nucleus, oral
nTPM: 252.1
2366 Female, age 91, both hemispheres 255.4
1939 Male, age 80, both hemispheres 252.7
2012 Female, age 85, both hemispheres 251.7
2167 Male, age 76, both hemispheres 250.6
2361 Male, age 74, both hemispheres 250.2
Reticulotegmental nucleus
nTPM: 248.6
2325 Male, age 76, both hemispheres 250.8
2333 Male, age 80, both hemispheres 249.8
2452 Male, age 74, both hemispheres 248.4
2322 Female, age 91, both hemispheres 245.5
Spinal trigeminal nucleus, oral
nTPM: 249.7
2164 Male, age 80, both hemispheres 252.8
1978 Male, age 76, both hemispheres 248.3
2737 Female, age 85, both hemispheres 247.9
Subcoeruleus area
nTPM: 249.3
2369 Female, age 85, left hemisphere 252.8
1958 Male, age 80, both hemispheres 249.5
2323 Female, age 91, left hemisphere 248.8
2451 Male, age 74, both hemispheres 248.3
2089 Male, age 76, left hemisphere 247.1
Superior olive
nTPM: 251.0
2364 Male, age 74, right hemisphere 257.8
1875 Female, age 85, both hemispheres 255.1
2020 Male, age 76, both hemispheres 249.1
2561 Female, age 91, both hemispheres 248.1
2329 Male, age 80, right hemisphere 245.0
Superior vestibular nucleus
nTPM: 256.7
2383 Male, age 74, both hemispheres 262.4
2061 Male, age 76, both hemispheres 255.0
2015 Male, age 80, both hemispheres 252.9
Ventral periolivary nuclei
nTPM: 249.8
2023 Male, age 76, both hemispheres 254.0
2165 Male, age 80, both hemispheres 252.4
2794 Female, age 91, left hemisphere 247.7
2130 Female, age 85, both hemispheres 245.1
Ventrolateral tegmental area, A5 NE cell group
nTPM: 253.5
2359 Male, age 61, both hemispheres 265.5
2840 Female, age 85, both hemispheres 254.5
2161 Male, age 80, both hemispheres 253.5
2449 Male, age 74, both hemispheres 252.8
1959 Male, age 76, both hemispheres 249.2
2456 Female, age 91, both hemispheres 245.6

PONS - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 240.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Locus coeruleus
Scaled Tags Per Million: 240.5
FF:10182-103D2 60 years, female 272.7
FF:10165-103B3 76 years, female 208.3
Pons
Scaled Tags Per Million: 214.4
FF:10033-101E6 18-54 years, mixed 214.4

PONS - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
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Average nTPM 104.4
Pig sample Sample description nTPM
Pons
nTPM: 104.5
Samples: 4

Max nTPM: 128.5
Min nTPM: 73.9
Sample A Female 128.5
Sample B Female 73.9
Sample C Male 102.7
Sample D Male 112.7

PONS - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Read more
Max Expression energy 1.0
Allen experiment id Experiment description Expression energy
Pons
Expression energy: 1.0
1344 Antisense, RP_Baylor_102713, Mouse strain C57BL/6J (56 days, male) 1.0
1343 Antisense, RP_Baylor_102713, Mouse strain C57BL/6J (56 days, male) 0.7

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The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.