MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:123.9 nTPM
HPA:123.9 nTPM
GTEx:76.2 nTPM
FANTOM5:221.3 Scaled Tags Per Million
Pig:22.4 nTPM
Mouse:72.2 nTPM

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 123.9
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 87.5
1870 Female, age 42, unknown 97.6
2411 Female, age 72, unknown 96.5
1833 Male, age 53, unknown 89.8
2666 Male, age 74, left hemisphere 89.7
1830 Male, age 51, unknown 89.5
2219 Male, age 76, both hemispheres 85.2
1827 Male, age 72, unknown 84.4
2586 Male, age 75, left hemisphere 84.4
2828 Female, age 72, unknown 84.1
2019 Male, age 18, unknown 73.8
Dorsal raphe nucleus
nTPM: 99.9
2750 Male, age 76, both hemispheres 113.5
2047 Male, age 72, unknown 108.7
2298 Female, age 72, unknown 97.2
1828 Male, age 53, unknown 90.9
2016 Female, age 72, unknown 89.4
Inferior colliculus
nTPM: 79.8
2849 Male, age 72, unknown 83.7
1848 Female, age 42, unknown 80.3
1890 Male, age 53, unknown 79.7
2097 Female, age 72, unknown 75.5
Median raphe nucleus
nTPM: 123.9
2220 Male, age 76, midline 123.9
Pedunculopontine tegmental nucleus
nTPM: 93.7
2334 Male, age 80, both hemispheres 97.4
1921 Female, age 85, both hemispheres 93.0
2338 Male, age 61, both hemispheres 90.7
Periaquaductal grey, anterior
nTPM: 84.2
1795 Male, age 51, unknown 87.9
1947 Male, age 18, unknown 86.3
2502 Female, age 75, unknown 78.5
Periaquaductal grey, dorsal
nTPM: 88.1
1840 Male, age 53, unknown 94.1
2850 Male, age 76, both hemispheres 90.6
2464 Female, age 72, unknown 84.4
1831 Male, age 72, unknown 83.4
Periaquaductal grey, lateral
nTPM: 84.4
2053 Male, age 18, unknown 90.2
2140 Male, age 76, both hemispheres 83.8
2272 Male, age 74, both hemispheres 79.1
Pretectal area
nTPM: 80.5
2825 Male, age 18, unknown 99.2
2224 Female, age 72, unknown 93.3
2407 Male, age 75, both hemispheres 84.0
2273 Male, age 74, both hemispheres 83.7
2316 Male, age 76, right hemisphere 79.6
2007 Male, age 72, unknown 76.0
1815 Male, age 53, unknown 75.4
1817 Female, age 42, unknown 75.0
1944 Female, age 72, unknown 74.4
2667 Female, age 75, unknown 72.9
1816 Male, age 51, unknown 72.2
Red nucleus
nTPM: 86.0
2588 Male, age 74, left hemisphere 93.2
2584 Male, age 75, left hemisphere 88.7
2503 Female, age 72, unknown 88.5
2769 Male, age 72, unknown 88.0
2227 Male, age 72, unknown 86.8
2725 Female, age 75, unknown 86.3
1821 Female, age 72, unknown 86.2
2823 Male, age 76, right hemisphere 85.5
1904 Male, age 53, unknown 84.4
1865 Male, age 51, unknown 83.8
1954 Female, age 42, unknown 83.1
2785 Male, age 18, unknown 77.3
Substantia nigra
nTPM: 87.7
2590 Female, age 75, unknown 93.9
1941 Male, age 53, unknown 90.9
2699 Male, age 18, unknown 90.0
1851 Male, age 51, unknown 88.5
2583 Male, age 75, right hemisphere 88.2
2241 Male, age 72, unknown 87.6
2665 Male, age 74, both hemispheres 87.2
1916 Female, age 42, unknown 84.7
2409 Female, age 72, unknown 83.7
1889 Female, age 72, unknown 81.9
Superior colliculus
nTPM: 81.7
2668 Female, age 75, unknown 90.0
2587 Male, age 74, left hemisphere 86.1
1839 Male, age 51, unknown 84.8
2664 Male, age 75, both hemispheres 84.1
1913 Female, age 42, unknown 82.4
1895 Male, age 76, right hemisphere 81.3
1796 Male, age 53, unknown 79.5
1995 Male, age 72, unknown 79.0
2261 Male, age 18, unknown 77.9
2087 Female, age 72, unknown 71.9
Ventral tegmental area
nTPM: 94.4
2021 Male, age 53, unknown 99.9
2223 Female, age 72, unknown 98.0
1942 Male, age 51, unknown 95.5
1915 Female, age 42, unknown 92.3
2218 Male, age 76, both hemispheres 92.1
2410 Female, age 72, unknown 88.7

MIDBRAIN - GTEx RNA-seqi
Average nTPM 76.2
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 76.2
Samples: 139

Max nTPM: 124.0
Min nTPM: 47.0
Std nTPM: 14.1
Median nTPM: 74.4
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 124.0
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 105.6
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 105.6
GTEX-1IGQW-0011-R2b-SM-D4P26 60-69 years, male 105.0
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 104.3
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 104.0
GTEX-1A8G7-0011-R2a-SM-7IGQI 60-69 years, male 102.6
GTEX-1EMGI-0011-R2b-SM-9OSVS 60-69 years, male 99.3
GTEX-1F75B-0011-R2a-SM-ARL8I 50-59 years, male 98.2
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 98.0
GTEX-12WSH-0011-R2a-SM-5GU68 50-59 years, male 96.6
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 221.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 221.3
FF:10158-103A5 76 years, female 221.3

MIDBRAIN - Pig RNA-seqi
Average nTPM 22.4
Pig sample Sample description nTPM
Midbrain
nTPM: 21.1
Samples: 4

Max nTPM: 25.1
Min nTPM: 17.9
Sample A Female 25.1
Sample B Female 20.2
Sample C Male 21.1
Sample D Male 17.9
Periaqueductal gray
nTPM: 20.1
Samples: 3

Max nTPM: 23.4
Min nTPM: 17.3
Sample B Female 19.7
Sample C Male 23.4
Sample D Male 17.3
Substantia nigra
nTPM: 22.4
Samples: 4

Max nTPM: 30.0
Min nTPM: 15.8
Sample A Female 30.0
Sample B Female 18.1
Sample C Male 25.8
Sample D Male 15.8
Superior colliculi
nTPM: 18.4
Samples: 4

Max nTPM: 20.4
Min nTPM: 16.1
Sample A Female 20.4
Sample B Female 16.1
Sample C Male 18.4
Sample D Male 18.7

MIDBRAIN - Mouse RNA-seqi
Average nTPM 72.2
Mouse sample Sample description nTPM
Midbrain
nTPM: 72.2
Samples: 4

Max nTPM: 75.8
Min nTPM: 64.6
Sample A Male 74.6
Sample B Male 73.7
Sample C Female 64.6
Sample D Female 75.8

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The Human Protein Atlas

The Human Protein Atlas project is funded
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