BASAL GANGLIA - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:17.6 nTPM
HPA:17.6 nTPM
GTEx:11.8 nTPM
FANTOM5:17.0 Scaled Tags Per Million
Pig:4.1 nTPM
Mouse:7.3 nTPM
Allen mouse:3.9 Expression energy

BASAL GANGLIA - Annotated protein expression
Pending normal tissue analysis

BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 17.6
Sample id Sample description nTPM
Caudate nucleus
nTPM: 14.1
2289 Male, age 61, right hemisphere 15.3
2288 Male, age 75, left hemisphere 14.5
2290 Female, age 72, unknown 14.3
1857 Female, age 85, left hemisphere 14.2
1781 Male, age 74, unknown 14.1
1854 Male, age 80, left hemisphere 14.0
2481 Female, age 94, left hemisphere 13.4
2846 Female, age 79, unknown 13.2
Claustrum
nTPM: 17.2
2568 Male, age 61, both hemispheres 19.6
2292 Female, age 85, both hemispheres 19.4
2645 Female, age 72, unknown 19.1
2491 Male, age 75, both hemispheres 17.6
2284 Female, age 91, both hemispheres 17.5
2198 Male, age 80, both hemispheres 16.4
1956 Male, age 74, unknown 16.0
2196 Female, age 79, unknown 14.6
2392 Female, age 94, both hemispheres 14.6
Globus pallidus, externus
nTPM: 17.6
2567 Female, age 72, unknown 23.6
2646 Male, age 61, right hemisphere 19.2
2772 Female, age 79, unknown 15.6
2395 Male, age 75, both hemispheres 15.3
1996 Male, age 80, right hemisphere 14.4
Globus pallidus, internus
nTPM: 16.6
2566 Female, age 72, unknown 19.8
2111 Female, age 85, right hemisphere 18.5
2037 Male, age 80, right hemisphere 16.8
2778 Female, age 91, both hemispheres 16.5
1818 Male, age 74, unknown 15.9
2287 Male, age 75, right hemisphere 14.7
2483 Female, age 94, right hemisphere 14.3
Nucleus accumbens
nTPM: 14.0
2391 Female, age 94, left hemisphere 15.0
2824 Male, age 61, right hemisphere 15.0
1806 Female, age 85, left hemisphere 14.8
1783 Male, age 74, unknown 14.3
2286 Male, age 75, left hemisphere 13.6
2732 Male, age 80, right hemisphere 13.6
2698 Female, age 72, unknown 13.4
1856 Female, age 91, right hemisphere 12.3
Nucleus basalis of Meynert
nTPM: 16.4
2569 Male, age 61, both hemispheres 18.4
2821 Male, age 75, both hemispheres 16.7
2393 Male, age 80, right hemisphere 15.6
2484 Female, age 94, left hemisphere 14.9
Nucleus of the diagonal band
nTPM: 14.4
2029 Male, age 61, right hemisphere 15.7
2195 Female, age 85, both hemispheres 15.2
2775 Male, age 80, right hemisphere 14.3
1979 Male, age 74, unknown 13.5
1812 Female, age 91, both hemispheres 13.4
Olfactory tubercle
nTPM: 14.7
1998 Female, age 91, both hemispheres 16.2
2487 Female, age 94, left hemisphere 14.6
2856 Male, age 75, right hemisphere 14.4
1846 Male, age 80, right hemisphere 13.4
Putamen
nTPM: 15.5
2489 Female, age 72, unknown 18.0
2647 Male, age 75, left hemisphere 17.8
1829 Male, age 74, unknown 15.8
2466 Female, age 79, unknown 15.6
1937 Female, age 91, right hemisphere 14.3
2482 Female, age 94, left hemisphere 13.8
1838 Male, age 80, right hemisphere 13.4
Septal nuclei
nTPM: 14.5
2059 Female, age 85, both hemispheres 15.4
2199 Male, age 80, right hemisphere 15.3
2031 Female, age 72, unknown 14.6
2629 Female, age 94, right hemisphere 14.6
1960 Male, age 74, unknown 14.3
2394 Male, age 61, left hemisphere 13.8
2009 Female, age 91, both hemispheres 13.3

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 11.8
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 10.7
Samples: 246

Max nTPM: 17.3
Min nTPM: 5.9
Std nTPM: 2.0
Median nTPM: 10.7
GTEX-1B996-0011-R5a-SM-7P8PN 60-69 years, male 17.3
GTEX-13NYB-0011-R5a-SM-5MR45 40-49 years, male 16.3
GTEX-1H3O1-0011-R5b-SM-ADEH8 60-69 years, male 16.0
GTEX-X585-0011-R5A-SM-46MVI 50-59 years, male 15.7
GTEX-13O3O-0011-R5b-SM-5KM44 60-69 years, female 15.1
GTEX-17HHY-0011-R5b-SM-79OMZ 50-59 years, male 15.1
GTEX-14BMV-0011-R5b-SM-62LFT 50-59 years, male 14.8
GTEX-14LLW-0011-R5b-SM-5ZZU6 70-79 years, female 14.5
GTEX-13FXS-0011-R5b-SM-5LZYE 50-59 years, male 14.4
GTEX-12ZZW-0011-R5a-SM-5DUVN 50-59 years, male 14.2
GTEX-14ASI-0011-R5b-SM-6EU2M 60-69 years, male 14.2
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Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 10.2
Samples: 246

Max nTPM: 21.9
Min nTPM: 4.7
Std nTPM: 2.1
Median nTPM: 9.9
GTEX-X4EP-0011-R6A-SM-3P629 60-69 years, female 21.9
GTEX-17EVQ-0011-R6a-SM-7189U 70-79 years, male 18.8
GTEX-13N2G-0011-R6b-SM-5MR3P 60-69 years, male 15.8
GTEX-16Z82-0011-R6a-SM-7IGLV 60-69 years, male 15.6
GTEX-13O3O-0011-R6b-SM-5P9GY 60-69 years, female 15.4
GTEX-12WSE-0011-R6b-SM-5LZV5 20-29 years, male 15.2
GTEX-11DXW-0011-R6a-SM-DO11N 40-49 years, male 15.0
GTEX-18465-0011-R6a-SM-7LG6M 50-59 years, male 14.2
GTEX-18A6Q-0011-R6a-SM-7LG6R 60-69 years, male 14.2
GTEX-1GMRU-0011-R6b-SM-A9G3B 50-59 years, male 14.1
GTEX-1R46S-0011-R6a-SM-EZ6N6 60-69 years, female 14.1
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Brain - Putamen (basal ganglia)
Average nTPM: 11.8
Samples: 205

Max nTPM: 18.3
Min nTPM: 6.8
Std nTPM: 2.1
Median nTPM: 11.6
GTEX-13O3O-0011-R7b-SM-5P9GZ 60-69 years, female 18.3
GTEX-1B996-0011-R7b-SM-7IGNT 60-69 years, male 17.7
GTEX-1GMR8-0011-R7b-SM-CJI2I 50-59 years, female 17.7
GTEX-13N2G-0011-R7a-SM-5MR42 60-69 years, male 17.3
GTEX-1HCU6-0011-R7b-SM-ARL77 60-69 years, female 16.9
GTEX-12WSF-0011-R7b-SM-5HL99 70-79 years, male 16.1
GTEX-17F97-0011-R7b-SM-7MGVY 50-59 years, male 15.9
GTEX-13S7M-0011-R7a-SM-5O9DK 60-69 years, female 15.8
GTEX-18465-0011-R7b-SM-7LG6V 50-59 years, male 15.8
GTEX-1H3NZ-0011-R7a-SM-A9SKD 60-69 years, male 15.8
GTEX-132Q8-0011-R7b-SM-5N9F1 60-69 years, male 15.5
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BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 17.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 12.1
FF:10164-103B2 76 years, female 12.1
Globus pallidus
Scaled Tags Per Million: 17.0
FF:10161-103A8 76 years, female 21.5
FF:10175-103C4 60 years, female 12.6
Nucleus accumbens
Scaled Tags Per Million: 14.9
FF:10037-101F1 23-56 years, mixed 14.9
Putamen
Scaled Tags Per Million: 14.1
FF:10176-103C5 60 years, female 14.1

BASAL GANGLIA - Pig RNA-seqi
Average nTPM 4.1
Pig sample Sample description nTPM
Caudate
nTPM: 4.0
Samples: 4

Max nTPM: 4.4
Min nTPM: 3.4
Sample A Female 3.4
Sample B Female 4.4
Sample C Male 4.4
Sample D Male 3.7
Putamen
nTPM: 4.2
Samples: 4

Max nTPM: 4.9
Min nTPM: 3.7
Sample A Female 3.9
Sample B Female 3.7
Sample C Male 4.1
Sample D Male 4.9
Septum
nTPM: 3.9
Samples: 4

Max nTPM: 4.3
Min nTPM: 3.7
Sample A Female 3.7
Sample B Female 3.9
Sample C Male 4.3
Sample D Male 3.8
Ventral pallidum
nTPM: 4.1
Samples: 4

Max nTPM: 4.8
Min nTPM: 3.1
Sample A Female 3.1
Sample B Female 4.5
Sample C Male 4.8
Sample D Male 3.9

BASAL GANGLIA - Mouse RNA-seqi
Average nTPM 7.3
Mouse sample Sample description nTPM
Caudate putamen
nTPM: 7.4
Samples: 4

Max nTPM: 8.1
Min nTPM: 6.2
Sample A Male 7.2
Sample B Male 8.1
Sample C Female 7.9
Sample D Female 6.2
Septum
nTPM: 5.2
Samples: 4

Max nTPM: 5.6
Min nTPM: 4.8
Sample A Male 4.8
Sample B Male 5.1
Sample C Female 5.4
Sample D Female 5.6
Ventral forebrain
nTPM: 6.2
Samples: 4

Max nTPM: 6.6
Min nTPM: 5.8
Sample A Male 6.6
Sample B Male 5.8
Sample C Female 6.3
Sample D Female 6.1

BASAL GANGLIA - Allen Mouse ISHi
Max Expression energy 3.9
Allen experiment id Experiment description Expression energy
Striatum
Expression energy: 3.9
69059805 Antisense, RP_050317_04_A10, Mouse strain C57BL/6J (56 days, male) 3.9
Pallidum
Expression energy: 3.2
69059805 Antisense, RP_050317_04_A10, Mouse strain C57BL/6J (56 days, male) 3.2

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The Human Protein Atlas

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