MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:327.9 nTPM
HPA:327.9 nTPM
GTEx:830.4 nTPM
FANTOM5:864.0 Scaled Tags Per Million
Pig:167.5 nTPM
Mouse:19.1 nTPM
Allen mouse:0.1 Expression energy

MIDBRAIN - Annotated protein expression
Pending normal tissue analysis

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 327.9
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 298.8
1830 Male, age 51, unknown 320.4
1833 Male, age 53, unknown 318.6
2411 Female, age 72, unknown 305.9
1870 Female, age 42, unknown 305.3
2828 Female, age 72, unknown 301.1
2219 Male, age 76, both hemispheres 293.4
2586 Male, age 75, left hemisphere 290.8
2666 Male, age 74, left hemisphere 290.5
2019 Male, age 18, unknown 289.5
1827 Male, age 72, unknown 272.7
Dorsal raphe nucleus
nTPM: 272.6
2750 Male, age 76, both hemispheres 341.3
2016 Female, age 72, unknown 270.4
1828 Male, age 53, unknown 266.1
2047 Male, age 72, unknown 244.0
2298 Female, age 72, unknown 241.1
Inferior colliculus
nTPM: 266.0
2849 Male, age 72, unknown 291.2
1848 Female, age 42, unknown 273.6
1890 Male, age 53, unknown 256.7
2097 Female, age 72, unknown 242.6
Median raphe nucleus
nTPM: 285.6
2220 Male, age 76, midline 285.6
Pedunculopontine tegmental nucleus
nTPM: 274.7
2334 Male, age 80, both hemispheres 302.9
2338 Male, age 61, both hemispheres 261.8
1921 Female, age 85, both hemispheres 259.3
Periaquaductal grey, anterior
nTPM: 257.9
2502 Female, age 75, unknown 261.6
1947 Male, age 18, unknown 256.2
1795 Male, age 51, unknown 256.0
Periaquaductal grey, dorsal
nTPM: 255.7
2464 Female, age 72, unknown 271.4
1831 Male, age 72, unknown 259.0
1840 Male, age 53, unknown 246.8
2850 Male, age 76, both hemispheres 245.5
Periaquaductal grey, lateral
nTPM: 259.4
2053 Male, age 18, unknown 273.3
2272 Male, age 74, both hemispheres 265.5
2140 Male, age 76, both hemispheres 239.4
Pretectal area
nTPM: 257.4
2316 Male, age 76, right hemisphere 281.9
1815 Male, age 53, unknown 272.2
2825 Male, age 18, unknown 265.8
2407 Male, age 75, both hemispheres 261.7
2224 Female, age 72, unknown 259.9
1817 Female, age 42, unknown 257.9
2273 Male, age 74, both hemispheres 253.1
2667 Female, age 75, unknown 248.7
2007 Male, age 72, unknown 247.9
1944 Female, age 72, unknown 243.4
1816 Male, age 51, unknown 238.8
Red nucleus
nTPM: 327.9
2769 Male, age 72, unknown 365.6
2227 Male, age 72, unknown 360.9
2503 Female, age 72, unknown 356.5
2588 Male, age 74, left hemisphere 348.2
1865 Male, age 51, unknown 339.5
2823 Male, age 76, right hemisphere 338.0
1904 Male, age 53, unknown 337.7
2785 Male, age 18, unknown 310.2
1954 Female, age 42, unknown 310.1
1821 Female, age 72, unknown 297.8
2584 Male, age 75, left hemisphere 289.9
2725 Female, age 75, unknown 279.8
Substantia nigra
nTPM: 267.4
2590 Female, age 75, unknown 294.8
2665 Male, age 74, both hemispheres 287.4
2583 Male, age 75, right hemisphere 285.6
2699 Male, age 18, unknown 279.5
1851 Male, age 51, unknown 276.3
1889 Female, age 72, unknown 262.9
1941 Male, age 53, unknown 256.4
1916 Female, age 42, unknown 249.1
2241 Male, age 72, unknown 241.8
2409 Female, age 72, unknown 240.7
Superior colliculus
nTPM: 276.6
1913 Female, age 42, unknown 304.2
1995 Male, age 72, unknown 296.4
2587 Male, age 74, left hemisphere 289.2
2668 Female, age 75, unknown 288.4
1839 Male, age 51, unknown 281.8
1895 Male, age 76, right hemisphere 268.4
1796 Male, age 53, unknown 265.6
2664 Male, age 75, both hemispheres 259.0
2087 Female, age 72, unknown 258.9
2261 Male, age 18, unknown 253.8
Ventral tegmental area
nTPM: 293.4
2223 Female, age 72, unknown 350.4
2218 Male, age 76, both hemispheres 293.4
2410 Female, age 72, unknown 293.2
2021 Male, age 53, unknown 289.7
1942 Male, age 51, unknown 273.6
1915 Female, age 42, unknown 260.2

MIDBRAIN - GTEx RNA-seqi
Average nTPM 830.4
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 830.4
Samples: 139

Max nTPM: 2645.5
Min nTPM: 102.6
Std nTPM: 486.3
Median nTPM: 731.1
GTEX-ZV68-0011-R2a-SM-4YCDK 50-59 years, female 2645.5
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 2412.7
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 2322.6
GTEX-12WSD-0011-R2a-SM-5LZWB 60-69 years, female 2057.2
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 2040.0
GTEX-139TS-0011-R2b-SM-5J1MX 60-69 years, male 2008.2
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 1951.6
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 1895.3
GTEX-OXRO-0011-R2A-SM-3NB1W 60-69 years, female 1890.8
GTEX-YJ89-0011-R2b-SM-4RGLT 60-69 years, male 1822.4
GTEX-1A8G7-0011-R2a-SM-7IGQI 60-69 years, male 1748.3
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 864.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 864.0
FF:10158-103A5 76 years, female 864.0

MIDBRAIN - Pig RNA-seqi
Average nTPM 167.5
Pig sample Sample description nTPM
Midbrain
nTPM: 167.5
Samples: 4

Max nTPM: 414.8
Min nTPM: 58.2
Sample A Female 414.8
Sample B Female 125.5
Sample C Male 71.4
Sample D Male 58.2
Periaqueductal gray
nTPM: 79.6
Samples: 3

Max nTPM: 83.6
Min nTPM: 72.1
Sample B Female 83.6
Sample C Male 72.1
Sample D Male 83.2
Substantia nigra
nTPM: 130.4
Samples: 4

Max nTPM: 200.8
Min nTPM: 83.8
Sample A Female 123.9
Sample B Female 83.8
Sample C Male 113.1
Sample D Male 200.8
Superior colliculi
nTPM: 99.1
Samples: 4

Max nTPM: 131.8
Min nTPM: 57.9
Sample A Female 90.3
Sample B Female 57.9
Sample C Male 116.4
Sample D Male 131.8

MIDBRAIN - Mouse RNA-seqi
Average nTPM 19.1
Mouse sample Sample description nTPM
Midbrain
nTPM: 19.1
Samples: 4

Max nTPM: 25.5
Min nTPM: 14.2
Sample A Male 25.5
Sample B Male 18.0
Sample C Female 14.2
Sample D Female 18.5

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 0.1
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.1
73712816 Antisense, RP_051206_02_D12, Mouse strain C57BL/6J (56 days, male) 0.1

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.