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BRAIN SPINAL CORD Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA MIDBRAIN
OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
Brain proteome
SPINAL CORD - Expression summary
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:369.6 nTPM
HPA:369.6 nTPM
GTEx:1354.4 nTPM
FANTOM5:1194.4 Scaled Tags Per Million
Pig:255.9 nTPM

SPINAL CORD - Annotated protein expression
Pending normal tissue analysis

SPINAL CORD - HPA Brain RNA-seq
Max nTPM 369.6
Sample id Sample description nTPM
Cervical spinal cord, central gray
nTPM: 303.3
2816 Male, age 47, midline 324.4
1981 Female, age 72, midline 314.4
2565 Male, age 75, midline 312.4
2194 Female, age 79, both hemispheres 300.1
2048 Male, age 55, midline 265.0
Cervical spinal cord, dorsal horn
nTPM: 298.8
2296 Male, age 66, both hemispheres 388.2
2173 Female, age 72, unknown 319.7
1877 Male, age 55, unknown 293.2
2069 Male, age 47, both hemispheres 281.1
2297 Male, age 75, both hemispheres 259.5
2721 Male, age 90, both hemispheres 251.3
Cervical spinal cord, ventral horn
nTPM: 369.6
2480 Male, age 75, both hemispheres 422.1
2295 Male, age 66, both hemispheres 392.9
2809 Male, age 90, both hemispheres 391.9
2068 Male, age 55, unknown 361.2
2820 Female, age 79, both hemispheres 330.3
2098 Female, age 72, unknown 319.5

SPINAL CORD - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 1354.4
GTEx sample id Sample description nTPM
Brain - Spinal cord (cervical c-1)
Average nTPM: 1354.4
Samples: 159

Max nTPM: 3835.2
Min nTPM: 271.6
Std nTPM: 650.0
Median nTPM: 1254.5
GTEX-1H1DF-0011-R9b-SM-CM2RN 40-49 years, female 3835.2
GTEX-1HGF4-0011-R9a-SM-ADEH9 60-69 years, male 3627.7
GTEX-1CAV2-0011-R9b-SM-9WG5M 40-49 years, female 3356.2
GTEX-RU72-0011-R9A-SM-2TF67 50-59 years, female 3163.9
GTEX-148VJ-0011-R9b-SM-5SI77 70-79 years, male 3069.9
GTEX-1GN2E-0011-R9b-SM-9WG7F 60-69 years, male 3024.8
GTEX-13PLJ-0011-R9b-SM-5O9DV 60-69 years, female 2712.7
GTEX-1GF9W-0011-R9b-SM-9WG7J 60-69 years, male 2621.7
GTEX-13O1R-0011-R9b-SM-5KM33 60-69 years, male 2620.6
GTEX-Q2AG-0011-R9A-SM-2HMJ6 40-49 years, female 2598.5
GTEX-1OJC4-0011-R9a-SM-EZ6N1 50-59 years, female 2412.5
GTEX-13CIG-0011-R9a-SM-5K7VU 50-59 years, male 2276.5
GTEX-13NYB-0011-R9b-SM-5MR5P 40-49 years, male 2229.0
GTEX-1I1GS-0011-R9b-SM-CMKHF 60-69 years, male 2203.8
GTEX-11ZVC-0011-R9a-SM-57WC5 50-59 years, female 2195.0
GTEX-1C6VS-0011-R9b-SM-9WG5W 60-69 years, male 2152.4
GTEX-13PL6-0011-R9b-SM-5O9CH 40-49 years, female 2120.7
GTEX-13FTY-0011-R9b-SM-5KM2U 40-49 years, female 2116.8
GTEX-T6MN-0011-R9A-SM-32QOZ 50-59 years, male 2108.7
GTEX-1I1GV-0011-R9b-SM-ARZLE 60-69 years, male 2088.4
GTEX-1J8JJ-0011-R9a-SM-ACKVF 60-69 years, female 2066.4
GTEX-1IGQW-0011-R9b-SM-D4P25 60-69 years, male 2058.5
GTEX-ZE9C-0011-R9a-SM-4WWCY 60-69 years, male 2045.5
GTEX-13QJC-0011-R9b-SM-5PNX3 60-69 years, female 1997.9
GTEX-XLM4-0011-R9A-SM-4AT45 60-69 years, male 1974.3
GTEX-1KANB-0011-R9b-SM-EZ6MO 50-59 years, male 1967.2
GTEX-11EMC-0011-R9b-SM-DO921 60-69 years, female 1889.4
GTEX-1HSMO-0011-R9b-SM-CM2T2 60-69 years, male 1883.7
GTEX-1J8EW-0011-R9b-SM-D4P2F 60-69 years, female 1875.6
GTEX-1HR98-0011-R9b-SM-ARL79 60-69 years, male 1850.7
GTEX-ZF28-0011-R9a-SM-4WWDY 60-69 years, male 1850.3
GTEX-13PVQ-0011-R9b-SM-5LU3B 50-59 years, male 1824.7
GTEX-1HBPM-0011-R9b-SM-ARL7C 60-69 years, female 1780.3
GTEX-YJ89-0011-R9a-SM-4SOK7 60-69 years, male 1776.8
GTEX-14E6C-0011-R9a-SM-6EU33 40-49 years, male 1753.5
GTEX-16Z82-0011-R9a-SM-7DUFA 60-69 years, male 1707.6
GTEX-145LU-0011-R9b-SM-5SI66 50-59 years, male 1692.5
GTEX-1H3O1-0011-R9b-SM-CM2SQ 60-69 years, male 1680.1
GTEX-1GTWX-0011-R9a-SM-ADEH4 60-69 years, male 1673.9
GTEX-14E7W-0011-R9a-SM-62LE6 70-79 years, male 1664.7
GTEX-11WQK-0011-R9b-SM-5BC6N 50-59 years, male 1655.3
GTEX-1H1DG-0011-R9b-SM-ACKVB 70-79 years, male 1646.8
GTEX-1I19N-0011-R9a-SM-CMKHN 70-79 years, male 1642.8
GTEX-17EVQ-0011-R9b-SM-79OJY 70-79 years, male 1605.4
GTEX-13X6I-0011-R9b-SM-5PNZJ 60-69 years, male 1599.6
GTEX-1CB4H-0011-R9a-SM-CKZNL 60-69 years, female 1596.4
GTEX-OXRO-0011-R9A-SM-3NB1X 60-69 years, female 1579.9
GTEX-11ZUS-0011-R9b-SM-5BC76 30-39 years, male 1547.6
GTEX-1H3NZ-0011-R9a-SM-ADEH7 60-69 years, male 1534.5
GTEX-139UW-0011-R9b-SM-5LZYT 60-69 years, male 1522.4
GTEX-1LB8K-0011-R9a-SM-EZ6MP 50-59 years, male 1520.4
GTEX-13OVL-0011-R9a-SM-5P9GX 50-59 years, male 1516.2
GTEX-1F88F-0011-R9b-SM-9WG7L 60-69 years, female 1514.2
GTEX-PWO3-0011-R9A-SM-EVR2V 60-69 years, female 1512.9
GTEX-11UD2-0011-R9b-SM-DO926 50-59 years, male 1508.5
GTEX-1BAJH-0011-R9b-SM-7EPIQ 70-79 years, male 1505.4
GTEX-TSE9-0011-R9A-SM-3DB7Q 60-69 years, female 1479.4
GTEX-13CZV-0011-R9a-SM-5LZXT 60-69 years, male 1473.5
GTEX-11ONC-0011-R9b-SM-5NQ8J 60-69 years, male 1470.4
GTEX-1A32A-0011-R9b-SM-7MGXD 50-59 years, female 1435.7
GTEX-1F52S-0011-R9a-SM-9WG62 60-69 years, female 1425.1
GTEX-1HBPH-0011-R9a-SM-CMKH3 40-49 years, female 1415.6
GTEX-1LVAO-0011-R9a-SM-EZ6MY 60-69 years, male 1398.3
GTEX-14BIM-0011-R9a-SM-6LLJL 60-69 years, female 1360.7
GTEX-WL46-0011-R9A-SM-3MJFP 50-59 years, male 1355.9
GTEX-13S7M-0011-R9a-SM-5O9DW 60-69 years, female 1324.5
GTEX-11ZTS-0011-R9b-SM-DO93Q 60-69 years, female 1321.4
GTEX-1EKGG-0011-R9a-SM-CMKFV 60-69 years, male 1319.2
GTEX-1EU9M-0011-R9a-SM-9WG61 60-69 years, male 1301.0
GTEX-13NZA-0011-R9b-SM-5MR5I 60-69 years, male 1297.6
GTEX-13N1W-0011-R9b-SM-5MR4R 70-79 years, male 1296.5
GTEX-ZVZQ-0011-R9a-SM-51MRH 60-69 years, female 1291.4
GTEX-12WSH-0011-R9b-SM-5LZUG 50-59 years, male 1287.8
GTEX-1EWIQ-0011-R9a-SM-ARL8L 70-79 years, female 1287.3
GTEX-131XW-0011-R9a-SM-5N9EO 50-59 years, female 1274.6
GTEX-1C6VQ-0011-R9a-SM-7SB85 50-59 years, male 1274.4
GTEX-1LSNL-0011-R9b-SM-EYYWK 50-59 years, male 1263.1
GTEX-1IDJH-0011-R9a-SM-ADEIN 70-79 years, male 1261.4
GTEX-1GZ4I-0011-R9b-SM-B2LY8 50-59 years, male 1257.0
GTEX-14PJM-0011-R9b-SM-6EU35 50-59 years, female 1254.5
GTEX-139T4-0011-R9b-SM-5HL6S 50-59 years, female 1216.8
GTEX-1H23P-0011-R9a-SM-CM2T1 60-69 years, male 1215.4
GTEX-1MJK2-0011-R9b-SM-EZ6MZ 50-59 years, male 1211.8
GTEX-16NPV-0011-R9b-SM-79ONF 50-59 years, female 1210.0
GTEX-NL4W-0011-R9a-SM-2I3G1 50-59 years, male 1208.8
GTEX-NPJ8-0011-R9a-SM-2YUN5 40-49 years, male 1207.3
GTEX-14ABY-0011-R9a-SM-5PNZK 50-59 years, male 1193.6
GTEX-1CAMQ-0011-R9a-SM-9WG5Z 40-49 years, male 1169.6
GTEX-1F6I4-0011-R9a-SM-CMKFU 60-69 years, male 1145.2
GTEX-13N2G-0011-R9b-SM-5MR4E 60-69 years, male 1144.4
GTEX-1I1CD-0011-R9a-SM-CMKHB 60-69 years, female 1138.6
GTEX-1GZHY-0011-R9a-SM-9WG5R 50-59 years, female 1129.4
GTEX-13JUV-0011-R9a-SM-5LZX3 40-49 years, female 1121.4
GTEX-1192X-0011-R9b-SM-DO934 50-59 years, male 1120.0
GTEX-14BIN-0011-R9a-SM-5SI76 50-59 years, female 1119.3
GTEX-1GF9V-0011-R9a-SM-CL53K 60-69 years, male 1109.4
GTEX-131YS-0011-R9b-SM-5EQLY 60-69 years, female 1105.7
GTEX-1GZ2Q-0011-R9a-SM-9WG7A 40-49 years, male 1104.9
GTEX-1JMLX-0011-R9a-SM-EYYXM 50-59 years, male 1100.1
GTEX-11GSP-0011-R9b-SM-5NQ77 60-69 years, female 1068.1
GTEX-14JIY-0011-R9a-SM-6EU34 60-69 years, male 1058.0
GTEX-1EH9U-0011-R9b-SM-9WG5T 60-69 years, male 1051.1
GTEX-1LVA9-0011-R9a-SM-EYYWF 50-59 years, male 1043.3
GTEX-1JJ6O-0011-R9a-SM-EYYXP 60-69 years, male 1042.7
GTEX-1RQEC-0011-R9a-SM-EZ6N3 60-69 years, male 1022.4
GTEX-14PJO-0011-R9b-SM-62LE9 60-69 years, male 973.4
GTEX-QVUS-0011-R9A-SM-3GIJA 60-69 years, female 968.7
GTEX-1IY9M-0011-R9b-SM-D3L8J 60-69 years, male 963.9
GTEX-147GR-0011-R9a-SM-5S2UY 60-69 years, male 961.2
GTEX-1J1OQ-0011-R9b-SM-ARZMK 40-49 years, female 959.7
GTEX-1B8L1-0011-R9b-SM-9WG5U 60-69 years, male 958.6
GTEX-13VXU-0011-R9b-SM-5SI73 50-59 years, male 952.3
GTEX-QDT8-0011-R9A-SM-CYPRD 30-39 years, female 951.7
GTEX-13FLV-0011-R9b-SM-5L3DA 50-59 years, male 943.4
GTEX-1A8G7-0011-R9b-SM-7IGQH 60-69 years, male 932.0
GTEX-XMD1-0011-R9A-SM-4AT49 60-69 years, male 923.9
GTEX-13FXS-0011-R9a-SM-5K7UI 50-59 years, male 923.1
GTEX-18464-0011-R9a-SM-731BK 50-59 years, male 920.5
GTEX-15DCD-0011-R9b-SM-7KUED 70-79 years, female 892.9
GTEX-15ER7-0011-R9b-SM-6PALF 20-29 years, female 890.3
GTEX-12WSC-0011-R9a-SM-5GU4U 50-59 years, male 889.8
GTEX-1HBPI-0011-R9b-SM-ARL76 50-59 years, male 885.8
GTEX-1I1HK-0011-R9a-SM-CMKHK 60-69 years, male 880.7
GTEX-15G19-0011-R9b-SM-7KUEE 60-69 years, male 852.6
GTEX-12126-0011-R9b-SM-5BC6P 20-29 years, male 852.4
GTEX-T5JC-0011-R9A-SM-32PLV 20-29 years, male 835.5
GTEX-OHPN-0011-R9A-SM-5TDEJ 60-69 years, female 814.8
GTEX-1HFI6-0011-R9b-SM-CMKH4 40-49 years, male 806.5
GTEX-14BMV-0011-R9b-SM-5ZZUA 50-59 years, male 806.1
GTEX-1JN1M-0011-R9a-SM-EZ6MR 60-69 years, female 800.2
GTEX-13RTJ-0011-R9a-SM-5Q5AY 60-69 years, male 794.0
GTEX-13SLX-0011-R9b-SM-5SI6X 50-59 years, female 786.4
GTEX-12WSD-0011-R9a-SM-5GU6W 60-69 years, female 782.3
GTEX-1GN1U-0011-R9b-SM-CMKFW 50-59 years, female 774.1
GTEX-14BIL-0011-R9a-SM-5SI7A 50-59 years, male 768.9
GTEX-16XZZ-0011-R9b-SM-7DHKX 60-69 years, male 759.0
GTEX-1R46S-0011-R9a-SM-EZ6N7 60-69 years, female 749.5
GTEX-1B933-0011-R9a-SM-79OOR 50-59 years, female 735.7
GTEX-NPJ7-0011-R9a-SM-2TC5R 60-69 years, female 734.1
GTEX-14PN4-0011-R9a-SM-6LLH9 50-59 years, male 720.2
GTEX-15DYW-0011-R9b-SM-6PALB 60-69 years, female 715.3
GTEX-1ICLZ-0011-R9a-SM-ARL7E 60-69 years, male 708.7
GTEX-YFC4-0011-R9a-SM-4SOK4 40-49 years, female 680.7
GTEX-13SLW-0011-R9a-SM-5O9BT 70-79 years, male 673.4
GTEX-15EO6-0011-R9a-SM-6PALG 50-59 years, male 673.3
GTEX-13OVJ-0011-R9b-SM-5L3GD 50-59 years, female 656.9
GTEX-R55E-0011-R9A-SM-2TC6C 20-29 years, male 625.9
GTEX-ZAB4-0011-R9a-SM-4SOKG 40-49 years, male 600.6
GTEX-1H2FU-0011-R9b-SM-CE6S4 60-69 years, female 569.1
GTEX-13NYS-0011-R9b-SM-5MR44 60-69 years, male 564.7
GTEX-15DDE-0011-R9b-SM-6M46U 50-59 years, female 542.9
GTEX-RNOR-0011-R9A-SM-2TF52 50-59 years, female 512.1
GTEX-11DZ1-0011-R9a-SM-DO933 50-59 years, male 494.1
GTEX-1H1ZS-0011-R9a-SM-CM2SO 70-79 years, male 483.8
GTEX-QVJO-0011-R9A-SM-2S1QH 60-69 years, female 415.3
GTEX-15CHQ-0011-R9a-SM-6LLHX 60-69 years, male 383.7
GTEX-13OW5-0011-R9b-SM-5O9CL 60-69 years, male 343.9
GTEX-1IKJJ-0011-R9a-SM-ARZLI 60-69 years, male 342.7
GTEX-1GN73-0011-R9a-SM-CKZO5 60-69 years, male 271.6
Show allShow less

SPINAL CORD - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 1194.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Spinal cord
Scaled Tags Per Million: 1194.4
FF:10181-103D1 60 years, female 1520.1
FF:10159-103A6 76 years, female 868.7

SPINAL CORD - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 255.9
Pig sample Sample description nTPM
Dorsal spinal cord
nTPM: 205.6
Samples: 4

Max nTPM: 224.0
Min nTPM: 181.4
Sample A Female 181.4
Sample B Female 224.0
Sample C Male 222.5
Sample D Male 194.5
Ventral spinal cord
nTPM: 255.9
Samples: 4

Max nTPM: 325.1
Min nTPM: 220.5
Sample A Female 228.1
Sample B Female 249.7
Sample C Male 220.5
Sample D Male 325.1

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