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BRAIN AMYGDALA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX HIPPOCAMPAL FORMATION HYPOTHALAMUS
MEDULLA OBLONGATA MIDBRAIN PONS SPINAL CORD THALAMUS WHITE MATTER
Brain proteome
Amygdala
AMYGDALA - Expression summary
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:95.6 nTPM
HPA:95.6 nTPM
GTEx:177.0 nTPM
FANTOM5:72.5 Scaled Tags Per Million

AMYGDALA - Annotated protein expression
Pending normal tissue analysis

AMYGDALA - HPA Brain RNA-seq
Max nTPM 95.6
Sample id Sample description nTPM
Amygdala
nTPM: 90.8
2695 Female, age 67, right hemisphere 101.0
2517 Female, age 94, left hemisphere 91.0
2814 Male, age 76, right hemisphere 90.6
1987 Female, age 91, left hemisphere 87.6
2514 Male, age 75, right hemisphere 83.7
Basal amygdala
nTPM: 92.7
2243 Female, age 91, right hemisphere 95.5
2827 Female, age 67, right hemisphere 95.4
2110 Male, age 80, left hemisphere 93.3
2685 Female, age 94, left hemisphere 92.3
1955 Male, age 76, both hemispheres 92.0
2609 Male, age 75, right hemisphere 87.6
Central amygdala
nTPM: 95.3
2826 Female, age 94, left hemisphere 112.8
2239 Male, age 80, left hemisphere 95.1
2701 Female, age 91, right hemisphere 93.0
2515 Male, age 75, right hemisphere 88.2
1905 Male, age 76, both hemispheres 87.3
Corticomedial amygdala
nTPM: 93.9
2829 Male, age 80, left hemisphere 101.2
2242 Female, age 91, right hemisphere 96.7
2535 Female, age 67, right hemisphere 94.7
2428 Male, age 75, right hemisphere 92.8
2240 Male, age 76, both hemispheres 89.4
2429 Female, age 94, left hemisphere 88.5
Lateral amygdala
nTPM: 95.6
2830 Female, age 67, right hemisphere 109.0
2534 Female, age 94, left hemisphere 101.9
2516 Male, age 75, right hemisphere 92.9
2256 Male, age 80, left hemisphere 90.9
1883 Male, age 76, both hemispheres 89.9
2255 Female, age 91, right hemisphere 89.2
Stria terminalis, bed nucleus
nTPM: 92.8
2201 Male, age 74, unknown 94.8
1974 Female, age 91, both hemispheres 92.5
2486 Female, age 94, both hemispheres 91.0

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 177.0
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 177.0
Samples: 152

Max nTPM: 899.7
Min nTPM: 75.2
Std nTPM: 84.7
Median nTPM: 161.1
GTEX-X4EP-0011-R4B-SM-3P627 60-69 years, female 899.7
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 387.0
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 365.3
GTEX-1JJEA-0011-R4a-SM-EXUTC 60-69 years, male 350.4
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 339.3
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 323.9
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 305.7
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 296.5
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 286.2
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 283.9
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 279.0
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 278.1
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 266.0
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 262.5
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 260.4
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 257.0
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 251.2
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 248.7
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 246.4
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 245.8
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 241.8
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 241.6
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 236.8
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 236.6
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 236.3
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 235.6
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 233.1
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 222.2
GTEX-183WM-0011-R4a-SM-7LG6S 70-79 years, female 222.0
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 220.3
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 219.8
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 218.7
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 216.7
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 213.6
GTEX-1JN6P-0011-R4a-SM-EZ6MS 60-69 years, male 209.0
GTEX-18464-0011-R4a-SM-7LG6T 50-59 years, male 208.7
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 208.3
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 207.2
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 207.1
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 207.1
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 207.0
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 204.0
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 203.1
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 202.9
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 200.5
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 198.3
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 194.4
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 191.8
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 191.6
GTEX-ZE9C-0011-R4a-SM-4WKH6 60-69 years, male 190.9
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 189.8
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 189.8
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 188.2
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 185.8
GTEX-T5JC-0011-R4A-SM-32PLT 20-29 years, male 183.1
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 183.0
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 182.4
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 182.1
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 181.7
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 181.7
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 180.3
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 176.8
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 174.9
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 171.1
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 169.3
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 168.1
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 167.2
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 166.2
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 166.0
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 165.5
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 165.4
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 163.6
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 163.0
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 162.6
GTEX-Y8DK-0011-R4A-SM-EXUR1 60-69 years, male 161.8
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 161.3
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 160.9
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 158.7
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 158.6
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 158.0
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 156.6
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 154.8
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 153.8
GTEX-NL3H-0011-R4a-SM-2I3GK 60-69 years, male 152.2
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 151.7
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 150.8
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 148.9
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 148.6
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 148.3
GTEX-145MI-0011-R4b-SM-5PNZH 60-69 years, female 148.1
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 147.1
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 146.8
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 146.8
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 144.4
GTEX-P44G-0011-R4A-SM-2I3FB 30-39 years, male 143.1
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 141.6
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 141.5
GTEX-15DDE-0011-R4b-SM-7KULI 50-59 years, female 141.0
GTEX-1CB4J-0011-R4b-SM-9WG5P 60-69 years, male 139.4
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 137.9
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 137.9
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 137.9
GTEX-1H2FU-0011-R4a-SM-CL551 60-69 years, female 136.9
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 136.3
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 135.3
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 134.1
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 133.2
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 132.3
GTEX-QDT8-0011-R4A-SM-32PKM 30-39 years, female 131.7
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 131.5
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 129.0
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 127.8
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 126.8
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 125.8
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 124.9
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 123.5
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 123.2
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 122.8
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 120.8
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 119.0
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 118.9
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 118.0
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 117.3
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 116.1
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 113.8
GTEX-R55E-0011-R4A-SM-2TC5H 20-29 years, male 113.6
GTEX-T6MN-0011-R4A-SM-32QPG 50-59 years, male 113.0
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 112.4
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 111.3
GTEX-UTHO-0011-R4A-SM-3GIJP 60-69 years, male 111.2
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 111.1
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 110.5
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 109.9
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 109.5
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 108.4
GTEX-P44H-0011-R4A-SM-2XCEW 40-49 years, male 107.1
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 106.0
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 105.7
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 105.2
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 103.7
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 101.7
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 101.7
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 101.2
GTEX-QMR6-0011-R4A-SM-32PKU 50-59 years, male 101.2
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 96.1
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 95.7
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 94.2
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 94.1
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 90.0
GTEX-N7MS-0011-R4a-SM-2HMKW 60-69 years, male 86.1
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 85.0
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 75.2
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AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 72.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 72.5
FF:10151-102I7 76 years, female 72.5

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