BASAL GANGLIA - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:99.3 nTPM
HPA:99.3 nTPM
GTEx:199.0 nTPM
FANTOM5:188.6 Scaled Tags Per Million

BASAL GANGLIA - Annotated protein expression
Pending normal tissue analysis

BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 99.3
Sample id Sample description nTPM
Caudate nucleus
nTPM: 93.0
2846 Female, age 79, unknown 105.8
2290 Female, age 72, unknown 97.7
1781 Male, age 74, unknown 94.1
1854 Male, age 80, left hemisphere 92.9
1857 Female, age 85, left hemisphere 92.6
2288 Male, age 75, left hemisphere 89.3
2289 Male, age 61, right hemisphere 86.6
2481 Female, age 94, left hemisphere 84.7
Claustrum
nTPM: 99.3
2284 Female, age 91, both hemispheres 105.8
2645 Female, age 72, unknown 103.0
1956 Male, age 74, unknown 102.4
2198 Male, age 80, both hemispheres 100.8
2196 Female, age 79, unknown 99.3
2392 Female, age 94, both hemispheres 99.2
2568 Male, age 61, both hemispheres 97.1
2292 Female, age 85, both hemispheres 96.4
2491 Male, age 75, both hemispheres 89.4
Globus pallidus, externus
nTPM: 85.6
2567 Female, age 72, unknown 87.4
2395 Male, age 75, both hemispheres 86.1
2772 Female, age 79, unknown 86.0
2646 Male, age 61, right hemisphere 84.9
1996 Male, age 80, right hemisphere 83.4
Globus pallidus, internus
nTPM: 86.6
2483 Female, age 94, right hemisphere 90.9
2566 Female, age 72, unknown 90.7
2287 Male, age 75, right hemisphere 87.4
1818 Male, age 74, unknown 86.9
2037 Male, age 80, right hemisphere 85.2
2778 Female, age 91, both hemispheres 84.7
2111 Female, age 85, right hemisphere 80.5
Nucleus accumbens
nTPM: 92.3
1856 Female, age 91, right hemisphere 105.1
2698 Female, age 72, unknown 97.2
1783 Male, age 74, unknown 95.6
1806 Female, age 85, left hemisphere 91.2
2286 Male, age 75, left hemisphere 90.4
2824 Male, age 61, right hemisphere 89.8
2732 Male, age 80, right hemisphere 85.7
2391 Female, age 94, left hemisphere 83.5
Nucleus basalis of Meynert
nTPM: 90.1
2393 Male, age 80, right hemisphere 91.6
2484 Female, age 94, left hemisphere 90.3
2569 Male, age 61, both hemispheres 89.4
2821 Male, age 75, both hemispheres 89.1
Nucleus of the diagonal band
nTPM: 93.3
2029 Male, age 61, right hemisphere 98.8
1812 Female, age 91, both hemispheres 96.2
2195 Female, age 85, both hemispheres 93.5
2775 Male, age 80, right hemisphere 92.4
1979 Male, age 74, unknown 85.4
Olfactory tubercle
nTPM: 96.4
1846 Male, age 80, right hemisphere 105.6
1998 Female, age 91, both hemispheres 96.8
2487 Female, age 94, left hemisphere 93.1
2856 Male, age 75, right hemisphere 90.1
Putamen
nTPM: 93.3
2647 Male, age 75, left hemisphere 105.9
2466 Female, age 79, unknown 94.5
1838 Male, age 80, right hemisphere 93.3
1937 Female, age 91, right hemisphere 91.5
2489 Female, age 72, unknown 91.4
1829 Male, age 74, unknown 90.3
2482 Female, age 94, left hemisphere 86.2
Septal nuclei
nTPM: 92.4
2031 Female, age 72, unknown 98.5
2009 Female, age 91, both hemispheres 95.3
1960 Male, age 74, unknown 95.2
2629 Female, age 94, right hemisphere 91.3
2394 Male, age 61, left hemisphere 91.1
2059 Female, age 85, both hemispheres 88.3
2199 Male, age 80, right hemisphere 87.2

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 199.0
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 179.5
Samples: 246

Max nTPM: 360.1
Min nTPM: 46.9
Std nTPM: 52.7
Median nTPM: 176.7
GTEX-1H3O1-0011-R5b-SM-ADEH8 60-69 years, male 360.1
GTEX-1C6WA-0011-R5a-SM-9WG5X 60-69 years, male 344.4
GTEX-1CAV2-0011-R5b-SM-9QEH4 40-49 years, female 326.5
GTEX-1HBPI-0011-R5a-SM-CKZOW 50-59 years, male 318.9
GTEX-14JG1-0011-R5a-SM-62LED 40-49 years, male 314.2
GTEX-14JIY-0011-R5b-SM-62LE7 60-69 years, male 293.0
GTEX-1JMQJ-0011-R5a-SM-EYYXO 50-59 years, male 288.4
GTEX-ZUA1-0011-R5b-SM-51MTG 40-49 years, male 285.7
GTEX-1J1OQ-0011-R5a-SM-D3L8K 40-49 years, female 277.0
GTEX-1R9K4-0011-R5b-SM-EZ6N8 60-69 years, male 274.8
GTEX-1F7RK-0011-R5b-SM-9WG5S 20-29 years, female 274.6
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Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 199.0
Samples: 246

Max nTPM: 417.2
Min nTPM: 39.4
Std nTPM: 57.5
Median nTPM: 196.4
GTEX-13FHO-0011-R6b-SM-5LZX1 60-69 years, male 417.2
GTEX-13IVO-0011-R6b-SM-5K7X9 70-79 years, male 378.7
GTEX-X4XY-0011-R6B-SM-46MVB 60-69 years, male 362.4
GTEX-17EVQ-0011-R6a-SM-7189U 70-79 years, male 354.0
GTEX-1J8Q2-0011-R6a-SM-CKZPG 60-69 years, male 350.6
GTEX-17MF6-0011-R6b-SM-7LG6G 40-49 years, male 332.9
GTEX-12ZZW-0011-R6a-SM-5DUVZ 50-59 years, male 323.0
GTEX-1AX9I-0011-R6a-SM-7P8PK 60-69 years, male 319.5
GTEX-12WSH-0011-R6b-SM-5P9F4 50-59 years, male 316.0
GTEX-1E2YA-0011-R6b-SM-CE6R2 50-59 years, male 306.8
GTEX-1F75A-0011-R6b-SM-9QEHD 50-59 years, male 300.6
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Brain - Putamen (basal ganglia)
Average nTPM: 193.2
Samples: 205

Max nTPM: 409.4
Min nTPM: 84.3
Std nTPM: 51.8
Median nTPM: 190.5
GTEX-17F97-0011-R7b-SM-7MGVY 50-59 years, male 409.4
GTEX-S7SE-0011-R7A-SM-2XCDI 50-59 years, male 328.0
GTEX-1IY9M-0011-R7a-SM-D4P49 60-69 years, male 325.7
GTEX-12WSI-0011-R7b-SM-5GU78 50-59 years, male 311.7
GTEX-1AX9I-0011-R7b-SM-7P8Q3 60-69 years, male 310.7
GTEX-12ZZW-0011-R7a-SM-5DUWC 50-59 years, male 307.8
GTEX-13FHO-0011-R7b-SM-5LZXD 60-69 years, male 298.8
GTEX-1E2YA-0011-R7a-SM-CJI1Z 50-59 years, male 298.1
GTEX-WHSE-0011-R7A-SM-3P5YZ 20-29 years, male 295.9
GTEX-WL46-0011-R7A-SM-3LK7X 50-59 years, male 294.5
GTEX-1IDJH-0011-R7a-SM-A9SM1 70-79 years, male 289.9
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BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 188.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 83.9
FF:10164-103B2 76 years, female 83.9
Globus pallidus
Scaled Tags Per Million: 47.1
FF:10175-103C4 60 years, female 67.8
FF:10161-103A8 76 years, female 26.3
Nucleus accumbens
Scaled Tags Per Million: 188.6
FF:10037-101F1 23-56 years, mixed 188.6
Putamen
Scaled Tags Per Million: 131.0
FF:10176-103C5 60 years, female 131.0

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The Human Protein Atlas

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