MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:195.2 nTPM
HPA:195.2 nTPM
GTEx:579.7 nTPM
FANTOM5:177.7 Scaled Tags Per Million
Pig:324.4 nTPM
Mouse:473.1 nTPM
Allen mouse:12.7 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 195.2
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 175.7
2586 Male, age 75, left hemisphere 189.3
1870 Female, age 42, unknown 182.3
2828 Female, age 72, unknown 180.7
2019 Male, age 18, unknown 178.8
2666 Male, age 74, left hemisphere 176.2
1827 Male, age 72, unknown 175.3
2411 Female, age 72, unknown 174.1
2219 Male, age 76, both hemispheres 169.5
1830 Male, age 51, unknown 165.9
1833 Male, age 53, unknown 165.1
Dorsal raphe nucleus
nTPM: 180.8
2298 Female, age 72, unknown 197.0
2750 Male, age 76, both hemispheres 183.7
1828 Male, age 53, unknown 180.7
2016 Female, age 72, unknown 175.6
2047 Male, age 72, unknown 167.1
Inferior colliculus
nTPM: 175.9
2097 Female, age 72, unknown 185.2
1890 Male, age 53, unknown 183.8
1848 Female, age 42, unknown 171.5
2849 Male, age 72, unknown 162.9
Median raphe nucleus
nTPM: 180.5
2220 Male, age 76, midline 180.5
Pedunculopontine tegmental nucleus
nTPM: 191.2
2338 Male, age 61, both hemispheres 202.4
2334 Male, age 80, both hemispheres 200.2
1921 Female, age 85, both hemispheres 171.0
Periaquaductal grey, anterior
nTPM: 195.2
2502 Female, age 75, unknown 214.4
1795 Male, age 51, unknown 189.1
1947 Male, age 18, unknown 181.9
Periaquaductal grey, dorsal
nTPM: 171.5
1831 Male, age 72, unknown 179.3
1840 Male, age 53, unknown 176.6
2464 Female, age 72, unknown 166.0
2850 Male, age 76, both hemispheres 164.4
Periaquaductal grey, lateral
nTPM: 171.6
2272 Male, age 74, both hemispheres 177.8
2053 Male, age 18, unknown 168.8
2140 Male, age 76, both hemispheres 168.4
Pretectal area
nTPM: 176.5
2007 Male, age 72, unknown 192.4
1817 Female, age 42, unknown 189.3
1816 Male, age 51, unknown 185.4
2224 Female, age 72, unknown 185.2
2316 Male, age 76, right hemisphere 178.4
1944 Female, age 72, unknown 175.2
2273 Male, age 74, both hemispheres 173.4
1815 Male, age 53, unknown 172.4
2825 Male, age 18, unknown 168.0
2667 Female, age 75, unknown 162.1
2407 Male, age 75, both hemispheres 159.3
Red nucleus
nTPM: 186.7
2503 Female, age 72, unknown 228.5
2769 Male, age 72, unknown 195.4
2227 Male, age 72, unknown 195.0
2785 Male, age 18, unknown 193.0
1904 Male, age 53, unknown 188.5
1865 Male, age 51, unknown 187.4
1821 Female, age 72, unknown 186.6
2725 Female, age 75, unknown 181.2
2584 Male, age 75, left hemisphere 178.1
1954 Female, age 42, unknown 173.6
2588 Male, age 74, left hemisphere 173.1
2823 Male, age 76, right hemisphere 159.7
Substantia nigra
nTPM: 182.9
1851 Male, age 51, unknown 208.9
1916 Female, age 42, unknown 202.2
2699 Male, age 18, unknown 189.5
1889 Female, age 72, unknown 184.3
2665 Male, age 74, both hemispheres 184.3
2590 Female, age 75, unknown 178.5
1941 Male, age 53, unknown 176.9
2409 Female, age 72, unknown 169.9
2583 Male, age 75, right hemisphere 167.6
2241 Male, age 72, unknown 166.7
Superior colliculus
nTPM: 180.9
1796 Male, age 53, unknown 192.3
2587 Male, age 74, left hemisphere 189.7
1913 Female, age 42, unknown 188.4
2668 Female, age 75, unknown 187.8
2261 Male, age 18, unknown 186.2
1995 Male, age 72, unknown 183.3
2087 Female, age 72, unknown 181.5
2664 Male, age 75, both hemispheres 168.5
1895 Male, age 76, right hemisphere 168.1
1839 Male, age 51, unknown 163.3
Ventral tegmental area
nTPM: 187.6
1915 Female, age 42, unknown 199.5
2223 Female, age 72, unknown 195.1
1942 Male, age 51, unknown 186.7
2410 Female, age 72, unknown 186.6
2218 Male, age 76, both hemispheres 179.0
2021 Male, age 53, unknown 178.8

MIDBRAIN - GTEx RNA-seqi
Average nTPM 579.7
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 579.7
Samples: 139

Max nTPM: 1320.8
Min nTPM: 222.0
Std nTPM: 176.0
Median nTPM: 555.6
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 1320.8
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 1305.3
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 1007.8
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 1001.4
GTEX-11GS4-0011-R2a-SM-DO942 60-69 years, male 946.4
GTEX-14BIM-0011-R2b-SM-69LQ6 60-69 years, female 937.0
GTEX-1F75B-0011-R2a-SM-ARL8I 50-59 years, male 915.3
GTEX-1IGQW-0011-R2b-SM-D4P26 60-69 years, male 915.1
GTEX-OXRO-0011-R2A-SM-3NB1W 60-69 years, female 847.4
GTEX-12WSH-0011-R2a-SM-5GU68 50-59 years, male 845.4
GTEX-T2IS-0011-R2A-SM-32QPF 20-29 years, female 812.2
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 177.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 177.7
FF:10158-103A5 76 years, female 177.7

MIDBRAIN - Pig RNA-seqi
Average nTPM 324.4
Pig sample Sample description nTPM
Midbrain
nTPM: 288.1
Samples: 4

Max nTPM: 407.0
Min nTPM: 209.5
Sample A Female 407.0
Sample B Female 292.7
Sample C Male 243.3
Sample D Male 209.5
Periaqueductal gray
nTPM: 226.3
Samples: 3

Max nTPM: 246.7
Min nTPM: 206.3
Sample B Female 225.8
Sample C Male 246.7
Sample D Male 206.3
Substantia nigra
nTPM: 292.0
Samples: 4

Max nTPM: 365.4
Min nTPM: 249.6
Sample A Female 365.4
Sample B Female 294.4
Sample C Male 249.6
Sample D Male 258.7
Superior colliculi
nTPM: 324.5
Samples: 4

Max nTPM: 392.4
Min nTPM: 266.2
Sample A Female 369.8
Sample B Female 392.4
Sample C Male 269.4
Sample D Male 266.2

MIDBRAIN - Mouse RNA-seqi
Average nTPM 473.1
Mouse sample Sample description nTPM
Midbrain
nTPM: 473.1
Samples: 4

Max nTPM: 532.1
Min nTPM: 422.1
Sample A Male 532.1
Sample B Male 459.5
Sample C Female 422.1
Sample D Female 478.5

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 12.7
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 12.7
69818338 Antisense, RP_050510_04_H06, Mouse strain C57BL/6J (56 days, male) 12.9
74749928 Antisense, RP_060220_04_F02, Mouse strain C57BL/6J (56 days, male) 12.6

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.