We use cookies to enhance the usability of our website. If you continue, we'll assume that you are happy to receive all cookies. More information. Don't show this again.
AP2M1
SECTIONS
  • TISSUE
  • BRAIN
  • SINGLE CELL TYPE
  • TISSUE CELL TYPE
  • PATHOLOGY
  • DISEASE
  • IMMUNE CELL
  • BLOOD PROTEIN
  • SUBCELLULAR
  • CELL LINE
  • STRUCTURE
  • METABOLIC
ABOUT
  • INTRODUCTION
  • HISTORY
  • ORGANIZATION
  • PUBLICATIONS
  • ANTIBODY SUBMISSION
  • ANTIBODY AVAILABILITY
  • ACKNOWLEDGMENTS
  • CONTACT
NEWS
  • NEWS ARTICLES
  • PRESS ROOM
LEARN
  • DICTIONARY
  • PROTEIN CLASSES
  • PROTEIN EVIDENCE
  • METHODS
  • EDUCATIONAL VIDEOS
DATA
  • DOWNLOADABLE DATA
  • PUBLICATION DATA
  • RELEASE HISTORY
  • SARS-COV-2
HELP
  • ANTIBODY VALIDATION
  • ASSAYS & ANNOTATION
  • DISCLAIMER
  • HELP & FAQ
  • PRIVACY STATEMENT
  • LICENCE & CITATION
Fields »
Search result

Field
Term
Gene name
Class
Subclass
Class
Keyword
Chromosome
External id
Tissue
Cell type
Expression
Patient ID
Tissue
Category
Cluster
Reliability
Brain region
Category
Brain region
Category
Brain region
Category
Reliability
Cell type
Category
Cluster
Tissue
Cell type
Enrichment
Cancer
Prognosis
Cancer
Category
Cell type
Category
Cell lineage
Category
Cluster
Annotation
Disease
Location
Searches
Location
Cell line
Type
Phase
Reliability
Cancer type
Category
Cluster
Pathway
Category
Score
Score
Score
Validation
Validation
Validation
Validation
Antibodies
Protein structure
In atlas
Column


  • SUMMARY

  • TISSUE

  • BRAIN

  • SINGLE CELL

  • TISSUE CELL

  • PATHOLOGY

  • DISEASE

  • IMMUNE

  • BLOOD

  • SUBCELL

  • CELL LINE

  • STRUCTURE

  • METABOLIC

  • AP2M1
BRAIN AMYGDALA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA MIDBRAIN
OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
Amygdala
AMYGDALA - Expression summary
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:233.5 nTPM
HPA:233.5 nTPM
GTEx:249.1 nTPM
FANTOM5:271.4 Scaled Tags Per Million
Pig:152.6 nTPM
Mouse:791.8 nTPM
Allen mouse:11.0 Expression energy

AMYGDALA - HPA Brain RNA-seq
Max nTPM 233.5
Sample id Sample description nTPM
Amygdala
nTPM: 202.2
2814 Male, age 76, right hemisphere 222.9
2514 Male, age 75, right hemisphere 201.7
1987 Female, age 91, left hemisphere 199.0
2517 Female, age 94, left hemisphere 194.0
2695 Female, age 67, right hemisphere 193.5
Basal amygdala
nTPM: 192.7
2243 Female, age 91, right hemisphere 208.9
2609 Male, age 75, right hemisphere 199.7
1955 Male, age 76, both hemispheres 199.1
2110 Male, age 80, left hemisphere 196.6
2685 Female, age 94, left hemisphere 189.1
2827 Female, age 67, right hemisphere 162.8
Central amygdala
nTPM: 198.3
1905 Male, age 76, both hemispheres 214.7
2239 Male, age 80, left hemisphere 199.0
2826 Female, age 94, left hemisphere 198.9
2515 Male, age 75, right hemisphere 194.2
2701 Female, age 91, right hemisphere 184.7
Corticomedial amygdala
nTPM: 198.8
2429 Female, age 94, left hemisphere 213.6
2829 Male, age 80, left hemisphere 211.3
2242 Female, age 91, right hemisphere 205.3
2428 Male, age 75, right hemisphere 197.1
2240 Male, age 76, both hemispheres 195.8
2535 Female, age 67, right hemisphere 169.8
Lateral amygdala
nTPM: 194.0
1883 Male, age 76, both hemispheres 224.1
2534 Female, age 94, left hemisphere 219.9
2516 Male, age 75, right hemisphere 199.3
2256 Male, age 80, left hemisphere 174.7
2830 Female, age 67, right hemisphere 174.7
2255 Female, age 91, right hemisphere 171.5
Stria terminalis, bed nucleus
nTPM: 233.5
1974 Female, age 91, both hemispheres 275.4
2486 Female, age 94, both hemispheres 231.7
2201 Male, age 74, unknown 193.3

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 249.1
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 249.1
Samples: 152

Max nTPM: 505.9
Min nTPM: 146.3
Std nTPM: 73.9
Median nTPM: 236.1
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 505.9
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 481.4
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 467.3
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 451.8
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 412.6
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 408.4
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 405.1
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 403.0
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 384.6
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 378.1
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 363.5
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 360.7
GTEX-R55E-0011-R4A-SM-2TC5H 20-29 years, male 359.9
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 355.0
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 351.3
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 348.7
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 346.0
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 330.7
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 329.8
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 328.5
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 327.9
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 327.9
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 327.6
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 327.2
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 325.2
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 323.6
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 321.0
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 318.5
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 315.9
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 315.2
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 315.0
GTEX-T5JC-0011-R4A-SM-32PLT 20-29 years, male 314.4
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 312.8
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 309.9
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 309.3
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 304.1
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 291.4
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 289.5
GTEX-P44G-0011-R4A-SM-2I3FB 30-39 years, male 287.4
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 286.1
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 285.0
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 281.0
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 279.3
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 276.5
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 276.4
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 275.8
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 274.2
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 273.9
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 269.3
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 269.2
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 266.7
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 265.7
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 262.7
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 262.2
GTEX-NL3H-0011-R4a-SM-2I3GK 60-69 years, male 260.6
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 260.0
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 258.8
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 258.6
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 258.2
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 254.6
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 254.3
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 252.4
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 251.3
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 250.8
GTEX-N7MS-0011-R4a-SM-2HMKW 60-69 years, male 248.2
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 247.7
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 247.7
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 246.3
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 245.9
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 243.5
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 243.0
GTEX-P44H-0011-R4A-SM-2XCEW 40-49 years, male 241.7
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 240.9
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 238.9
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 237.5
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 237.5
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 234.7
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 234.5
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 232.5
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 231.0
GTEX-UTHO-0011-R4A-SM-3GIJP 60-69 years, male 227.8
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 226.5
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 224.1
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 223.2
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 222.8
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 221.7
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 221.1
GTEX-15DDE-0011-R4b-SM-7KULI 50-59 years, female 220.0
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 220.0
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 216.9
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 216.9
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 214.0
GTEX-Y8DK-0011-R4A-SM-EXUR1 60-69 years, male 214.0
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 213.3
GTEX-T6MN-0011-R4A-SM-32QPG 50-59 years, male 213.2
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 213.1
GTEX-QDT8-0011-R4A-SM-32PKM 30-39 years, female 213.0
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 209.1
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 203.9
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 203.9
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 201.5
GTEX-18464-0011-R4a-SM-7LG6T 50-59 years, male 200.9
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 200.1
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 198.1
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 197.8
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 197.6
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 196.7
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 196.5
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 195.4
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 194.8
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 194.1
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 193.9
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 192.9
GTEX-QMR6-0011-R4A-SM-32PKU 50-59 years, male 191.0
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 190.5
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 188.8
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 187.0
GTEX-X4EP-0011-R4B-SM-3P627 60-69 years, female 186.8
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 186.1
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 185.3
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 184.6
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 184.0
GTEX-145MI-0011-R4b-SM-5PNZH 60-69 years, female 183.5
GTEX-1JJEA-0011-R4a-SM-EXUTC 60-69 years, male 183.5
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 182.6
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 182.2
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 179.4
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 179.0
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 178.9
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 174.1
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 173.7
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 173.0
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 171.7
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 171.1
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 170.9
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 170.2
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 168.5
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 168.3
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 167.8
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 167.3
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 166.5
GTEX-183WM-0011-R4a-SM-7LG6S 70-79 years, female 164.6
GTEX-1H2FU-0011-R4a-SM-CL551 60-69 years, female 164.0
GTEX-1JN6P-0011-R4a-SM-EZ6MS 60-69 years, male 163.0
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 161.7
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 161.7
GTEX-ZE9C-0011-R4a-SM-4WKH6 60-69 years, male 158.5
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 150.7
GTEX-1CB4J-0011-R4b-SM-9WG5P 60-69 years, male 150.1
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 147.7
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 147.1
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 146.3
Show allShow less

AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 271.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 271.4
FF:10151-102I7 76 years, female 271.4

AMYGDALA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 152.6
Pig sample Sample description nTPM
Amygdala
nTPM: 152.6
Samples: 4

Max nTPM: 219.3
Min nTPM: 120.7
Sample A Female 219.3
Sample B Female 120.7
Sample C Male 133.5
Sample D Male 137.0

AMYGDALA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 791.8
Mouse sample Sample description nTPM
Amygdala
nTPM: 791.8
Samples: 4

Max nTPM: 834.8
Min nTPM: 734.1
Sample A Male 834.8
Sample B Male 806.7
Sample C Female 734.1
Sample D Female 791.6

AMYGDALA - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Read more
Max Expression energy 11.0
Allen experiment id Experiment description Expression energy
Cortical subplate
Expression energy: 11.0
101 Antisense, RP_Baylor_102629, Mouse strain C57BL/6J (56 days, male) 11.0

Contact

  • NEWS ARTICLES
  • PRESS ROOM
  • contact@proteinatlas.org

The Project

  • INTRODUCTION
  • ORGANIZATION
  • PUBLICATIONS

The Human Protein Atlas

  • DOWNLOADABLE DATA
  • LICENCE & CITATION
  • HELP & FAQ
The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.