MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:211.1 nTPM
HPA:211.1 nTPM
GTEx:240.0 nTPM
FANTOM5:165.0 Scaled Tags Per Million
Pig:264.6 nTPM
Mouse:663.9 nTPM
Allen mouse:7.1 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 211.1
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 192.5
1827 Male, age 72, unknown 216.5
2411 Female, age 72, unknown 199.9
2666 Male, age 74, left hemisphere 198.8
2019 Male, age 18, unknown 197.3
2219 Male, age 76, both hemispheres 197.1
1870 Female, age 42, unknown 194.3
2828 Female, age 72, unknown 186.2
2586 Male, age 75, left hemisphere 186.0
1833 Male, age 53, unknown 177.7
1830 Male, age 51, unknown 171.1
Dorsal raphe nucleus
nTPM: 196.8
2298 Female, age 72, unknown 229.8
2047 Male, age 72, unknown 202.1
2750 Male, age 76, both hemispheres 196.4
1828 Male, age 53, unknown 191.4
2016 Female, age 72, unknown 164.3
Inferior colliculus
nTPM: 189.6
2097 Female, age 72, unknown 205.8
1848 Female, age 42, unknown 187.6
1890 Male, age 53, unknown 187.3
2849 Male, age 72, unknown 177.6
Median raphe nucleus
nTPM: 206.5
2220 Male, age 76, midline 206.5
Pedunculopontine tegmental nucleus
nTPM: 203.7
1921 Female, age 85, both hemispheres 210.8
2334 Male, age 80, both hemispheres 203.8
2338 Male, age 61, both hemispheres 196.4
Periaquaductal grey, anterior
nTPM: 205.8
1795 Male, age 51, unknown 217.6
1947 Male, age 18, unknown 209.1
2502 Female, age 75, unknown 190.7
Periaquaductal grey, dorsal
nTPM: 182.0
1831 Male, age 72, unknown 190.8
1840 Male, age 53, unknown 188.2
2850 Male, age 76, both hemispheres 176.4
2464 Female, age 72, unknown 172.5
Periaquaductal grey, lateral
nTPM: 177.5
2053 Male, age 18, unknown 185.0
2272 Male, age 74, both hemispheres 180.5
2140 Male, age 76, both hemispheres 166.9
Pretectal area
nTPM: 211.1
1816 Male, age 51, unknown 251.3
2007 Male, age 72, unknown 239.4
1944 Female, age 72, unknown 238.1
1817 Female, age 42, unknown 232.1
1815 Male, age 53, unknown 211.9
2667 Female, age 75, unknown 211.4
2224 Female, age 72, unknown 205.6
2273 Male, age 74, both hemispheres 193.6
2825 Male, age 18, unknown 183.9
2407 Male, age 75, both hemispheres 183.1
2316 Male, age 76, right hemisphere 171.8
Red nucleus
nTPM: 186.8
1821 Female, age 72, unknown 208.6
2725 Female, age 75, unknown 204.7
2785 Male, age 18, unknown 198.0
2588 Male, age 74, left hemisphere 193.5
2503 Female, age 72, unknown 189.7
2584 Male, age 75, left hemisphere 181.4
1954 Female, age 42, unknown 181.2
2227 Male, age 72, unknown 178.1
2769 Male, age 72, unknown 178.1
1904 Male, age 53, unknown 177.1
1865 Male, age 51, unknown 176.9
2823 Male, age 76, right hemisphere 174.8
Substantia nigra
nTPM: 210.5
1916 Female, age 42, unknown 244.6
1941 Male, age 53, unknown 234.9
1889 Female, age 72, unknown 233.1
1851 Male, age 51, unknown 226.5
2241 Male, age 72, unknown 205.4
2665 Male, age 74, both hemispheres 202.9
2409 Female, age 72, unknown 195.9
2699 Male, age 18, unknown 188.6
2583 Male, age 75, right hemisphere 186.8
2590 Female, age 75, unknown 186.5
Superior colliculus
nTPM: 193.6
1796 Male, age 53, unknown 216.2
2087 Female, age 72, unknown 209.3
2668 Female, age 75, unknown 207.7
2261 Male, age 18, unknown 206.1
2587 Male, age 74, left hemisphere 193.9
1895 Male, age 76, right hemisphere 186.6
1913 Female, age 42, unknown 185.3
1839 Male, age 51, unknown 182.6
2664 Male, age 75, both hemispheres 181.2
1995 Male, age 72, unknown 167.3
Ventral tegmental area
nTPM: 203.7
2218 Male, age 76, both hemispheres 220.4
2410 Female, age 72, unknown 219.9
1915 Female, age 42, unknown 217.6
2223 Female, age 72, unknown 192.6
1942 Male, age 51, unknown 190.5
2021 Male, age 53, unknown 181.4

MIDBRAIN - GTEx RNA-seqi
Average nTPM 240.0
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 240.0
Samples: 139

Max nTPM: 720.0
Min nTPM: 140.7
Std nTPM: 87.0
Median nTPM: 210.7
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 720.0
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 592.8
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 469.8
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 451.6
GTEX-11DZ1-0011-R2a-SM-DNZZM 50-59 years, male 441.3
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 429.6
GTEX-1B933-0011-R2b-SM-7IGNM 50-59 years, female 392.8
GTEX-1GN73-0011-R2a-SM-CJI2V 60-69 years, male 387.5
GTEX-1EMGI-0011-R2b-SM-9OSVS 60-69 years, male 386.6
GTEX-N7MS-0011-R2a-SM-2HML6 60-69 years, male 368.0
GTEX-1HB9E-0011-R2b-SM-A96RW 50-59 years, male 364.7
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 165.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 165.0
FF:10158-103A5 76 years, female 165.0

MIDBRAIN - Pig RNA-seqi
Average nTPM 264.6
Pig sample Sample description nTPM
Midbrain
nTPM: 250.6
Samples: 4

Max nTPM: 334.7
Min nTPM: 192.6
Sample A Female 232.0
Sample B Female 192.6
Sample C Male 334.7
Sample D Male 243.1
Periaqueductal gray
nTPM: 182.2
Samples: 3

Max nTPM: 219.0
Min nTPM: 154.1
Sample B Female 173.6
Sample C Male 219.0
Sample D Male 154.1
Substantia nigra
nTPM: 223.9
Samples: 4

Max nTPM: 305.4
Min nTPM: 145.7
Sample A Female 305.4
Sample B Female 178.0
Sample C Male 266.4
Sample D Male 145.7
Superior colliculi
nTPM: 264.6
Samples: 4

Max nTPM: 324.6
Min nTPM: 209.5
Sample A Female 288.3
Sample B Female 209.5
Sample C Male 324.6
Sample D Male 236.1

MIDBRAIN - Mouse RNA-seqi
Average nTPM 663.9
Mouse sample Sample description nTPM
Midbrain
nTPM: 664.0
Samples: 4

Max nTPM: 681.7
Min nTPM: 650.9
Sample A Male 657.1
Sample B Male 650.9
Sample C Female 666.1
Sample D Female 681.7

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 7.1
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 7.1
101 Antisense, RP_Baylor_102629, Mouse strain C57BL/6J (56 days, male) 7.1

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.