MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:119.1 nTPM
HPA:119.1 nTPM
GTEx:133.6 nTPM
FANTOM5:32.9 Scaled Tags Per Million
Pig:104.8 nTPM
Mouse:259.8 nTPM
Allen mouse:18.8 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 119.1
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 110.0
1870 Female, age 42, unknown 114.4
2411 Female, age 72, unknown 114.2
2586 Male, age 75, left hemisphere 111.6
1833 Male, age 53, unknown 110.7
1827 Male, age 72, unknown 110.4
2019 Male, age 18, unknown 110.4
1830 Male, age 51, unknown 109.7
2828 Female, age 72, unknown 109.5
2666 Male, age 74, left hemisphere 106.9
2219 Male, age 76, both hemispheres 101.9
Dorsal raphe nucleus
nTPM: 111.8
2750 Male, age 76, both hemispheres 116.2
2298 Female, age 72, unknown 115.5
2047 Male, age 72, unknown 111.5
1828 Male, age 53, unknown 110.0
2016 Female, age 72, unknown 105.7
Inferior colliculus
nTPM: 108.8
2097 Female, age 72, unknown 111.7
1890 Male, age 53, unknown 109.7
1848 Female, age 42, unknown 108.8
2849 Male, age 72, unknown 104.9
Median raphe nucleus
nTPM: 117.1
2220 Male, age 76, midline 117.1
Pedunculopontine tegmental nucleus
nTPM: 119.1
2338 Male, age 61, both hemispheres 129.6
2334 Male, age 80, both hemispheres 119.2
1921 Female, age 85, both hemispheres 108.5
Periaquaductal grey, anterior
nTPM: 111.5
2502 Female, age 75, unknown 113.9
1947 Male, age 18, unknown 113.6
1795 Male, age 51, unknown 106.8
Periaquaductal grey, dorsal
nTPM: 109.8
2850 Male, age 76, both hemispheres 116.2
1831 Male, age 72, unknown 108.6
2464 Female, age 72, unknown 107.8
1840 Male, age 53, unknown 106.8
Periaquaductal grey, lateral
nTPM: 110.6
2140 Male, age 76, both hemispheres 111.6
2272 Male, age 74, both hemispheres 111.0
2053 Male, age 18, unknown 109.2
Pretectal area
nTPM: 110.8
1817 Female, age 42, unknown 115.2
1815 Male, age 53, unknown 114.3
2273 Male, age 74, both hemispheres 111.7
2316 Male, age 76, right hemisphere 111.5
1816 Male, age 51, unknown 111.2
2007 Male, age 72, unknown 110.3
2224 Female, age 72, unknown 109.6
1944 Female, age 72, unknown 109.4
2667 Female, age 75, unknown 109.4
2825 Male, age 18, unknown 108.8
2407 Male, age 75, both hemispheres 107.9
Red nucleus
nTPM: 113.4
1865 Male, age 51, unknown 118.6
1904 Male, age 53, unknown 118.2
1821 Female, age 72, unknown 118.0
1954 Female, age 42, unknown 117.0
2725 Female, age 75, unknown 114.9
2227 Male, age 72, unknown 113.0
2823 Male, age 76, right hemisphere 112.4
2769 Male, age 72, unknown 112.3
2785 Male, age 18, unknown 111.0
2503 Female, age 72, unknown 110.0
2584 Male, age 75, left hemisphere 108.3
2588 Male, age 74, left hemisphere 107.1
Substantia nigra
nTPM: 115.0
1851 Male, age 51, unknown 121.3
1916 Female, age 42, unknown 119.8
2241 Male, age 72, unknown 117.6
2665 Male, age 74, both hemispheres 116.2
2699 Male, age 18, unknown 115.2
1889 Female, age 72, unknown 114.0
2409 Female, age 72, unknown 113.8
2590 Female, age 75, unknown 113.2
2583 Male, age 75, right hemisphere 111.1
1941 Male, age 53, unknown 107.5
Superior colliculus
nTPM: 109.2
1995 Male, age 72, unknown 113.0
1913 Female, age 42, unknown 112.8
2261 Male, age 18, unknown 111.5
1796 Male, age 53, unknown 111.4
2587 Male, age 74, left hemisphere 110.5
2087 Female, age 72, unknown 108.8
2668 Female, age 75, unknown 108.0
1895 Male, age 76, right hemisphere 107.5
1839 Male, age 51, unknown 107.4
2664 Male, age 75, both hemispheres 101.3
Ventral tegmental area
nTPM: 114.5
1915 Female, age 42, unknown 116.4
2223 Female, age 72, unknown 116.2
2410 Female, age 72, unknown 115.8
2021 Male, age 53, unknown 114.4
2218 Male, age 76, both hemispheres 114.3
1942 Male, age 51, unknown 110.1

MIDBRAIN - GTEx RNA-seqi
Average nTPM 133.6
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 133.6
Samples: 139

Max nTPM: 351.1
Min nTPM: 75.6
Std nTPM: 49.9
Median nTPM: 114.7
GTEX-1LVAO-0011-R2a-SM-EYYX1 60-69 years, male 351.1
GTEX-11TUW-0011-R2b-SM-DO92T 60-69 years, male 312.3
GTEX-13NYS-0011-R2b-SM-5MR4G 60-69 years, male 300.9
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 288.7
GTEX-1H23P-0011-R2a-SM-CKZP3 60-69 years, male 269.5
GTEX-14BIM-0011-R2b-SM-69LQ6 60-69 years, female 268.9
GTEX-13OVJ-0011-R2b-SM-5L3GP 50-59 years, female 258.5
GTEX-12WSF-0011-R2a-SM-5DUVU 70-79 years, male 252.0
GTEX-NL4W-0011-R2a-SM-2I5GV 50-59 years, male 234.6
GTEX-1B996-0011-R2a-SM-7IGON 60-69 years, male 224.5
GTEX-WHSE-0011-R2A-SM-3P5ZL 20-29 years, male 224.0
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 32.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 32.9
FF:10158-103A5 76 years, female 32.9

MIDBRAIN - Pig RNA-seqi
Average nTPM 104.8
Pig sample Sample description nTPM
Midbrain
nTPM: 104.3
Samples: 4

Max nTPM: 164.0
Min nTPM: 76.1
Sample A Female 164.0
Sample B Female 87.7
Sample C Male 89.5
Sample D Male 76.1
Periaqueductal gray
nTPM: 76.4
Samples: 3

Max nTPM: 84.3
Min nTPM: 67.5
Sample B Female 77.4
Sample C Male 84.3
Sample D Male 67.5
Substantia nigra
nTPM: 98.4
Samples: 4

Max nTPM: 116.6
Min nTPM: 88.8
Sample A Female 116.6
Sample B Female 88.8
Sample C Male 93.5
Sample D Male 94.5
Superior colliculi
nTPM: 104.8
Samples: 4

Max nTPM: 122.6
Min nTPM: 89.8
Sample A Female 122.6
Sample B Female 107.2
Sample C Male 99.7
Sample D Male 89.8

MIDBRAIN - Mouse RNA-seqi
Average nTPM 259.8
Mouse sample Sample description nTPM
Midbrain
nTPM: 259.8
Samples: 4

Max nTPM: 265.1
Min nTPM: 247.0
Sample A Male 265.1
Sample B Male 262.5
Sample C Female 264.7
Sample D Female 247.0

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 18.8
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 18.8
68924419 Antisense, RP_050303_02_C11, Mouse strain C57BL/6J (56 days, male) 18.8

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.