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RPL29
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BRAIN PONS Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA MIDBRAIN
OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
Pons
PONS - Expression summary
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

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No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
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Consensus:696.9 nTPM
HPA:696.9 nTPM
FANTOM5:60.5 Scaled Tags Per Million
Pig:253.2 nTPM

PONS - HPA Brain RNA-seq
Max nTPM 696.9
Sample id Sample description nTPM
Anterior cochlear nucleus, ventral
nTPM: 672.2
2090 Male, age 80, both hemispheres 692.9
2188 Female, age 91, both hemispheres 687.1
2301 Female, age 85, both hemispheres 667.2
1984 Male, age 76, both hemispheres 641.8
Dorsal cochlear nucleus
nTPM: 664.4
2187 Female, age 91, both hemispheres 685.0
2378 Male, age 80, both hemispheres 669.3
2370 Male, age 61, both hemispheres 664.6
2802 Male, age 74, right hemisphere 662.2
2058 Male, age 76, both hemispheres 640.9
Dorsal tegmental nucleus
nTPM: 670.0
2083 Male, age 80, both hemispheres 679.1
2326 Male, age 74, both hemispheres 676.4
2358 Male, age 61, both hemispheres 673.2
1936 Male, age 76, left hemisphere 651.1
Dorsolateral tegmental area
nTPM: 668.4
2337 Male, age 61, both hemispheres 711.7
2654 Male, age 80, both hemispheres 679.4
2360 Male, age 74, both hemispheres 656.6
2751 Female, age 85, both hemispheres 652.8
2141 Male, age 76, both hemispheres 641.6
Kolliker-Fuse nucleus
nTPM: 671.9
2315 Male, age 76, right hemisphere 688.5
2163 Male, age 80, both hemispheres 665.1
2793 Female, age 91, left hemisphere 662.0
Lateral lemniscal nuclei
nTPM: 638.5
2169 Male, age 76, both hemispheres 651.0
2746 Female, age 85, left hemisphere 648.2
2320 Female, age 91, left hemisphere 639.3
2453 Male, age 74, right hemisphere 629.8
2036 Male, age 80, both hemispheres 624.1
Lateral parabrachial nucleus
nTPM: 670.3
2792 Male, age 76, both hemispheres 689.7
2139 Female, age 85, right hemisphere 675.1
2013 Male, age 80, both hemispheres 672.2
2790 Male, age 61, both hemispheres 644.0
Lateral vestibular nucleus
nTPM: 670.0
2311 Male, age 80, both hemispheres 693.7
2184 Male, age 76, both hemispheres 646.3
Locus coeruleus
nTPM: 647.0
2162 Male, age 80, both hemispheres 661.1
2123 Female, age 91, both hemispheres 658.7
2720 Male, age 74, both hemispheres 652.0
2317 Female, age 72, unknown 645.7
1980 Male, age 76, both hemispheres 638.7
2014 Male, age 55, unknown 638.3
2788 Male, age 74, unknown 634.4
Medial olivary nucleus
nTPM: 696.9
1943 Male, age 61, both hemispheres 721.9
1962 Male, age 76, both hemispheres 700.0
2138 Female, age 91, both hemispheres 688.4
2851 Male, age 80, both hemispheres 677.4
Medial parabrachial nucleus
nTPM: 662.5
2170 Female, age 91, both hemispheres 691.4
2156 Male, age 61, both hemispheres 660.8
2854 Male, age 80, both hemispheres 656.5
2786 Male, age 76, both hemispheres 652.7
2463 Female, age 85, right hemisphere 651.2
Medial periolivary nuclei
nTPM: 652.1
2063 Male, age 76, both hemispheres 672.7
2081 Male, age 80, both hemispheres 663.4
2458 Female, age 91, both hemispheres 651.6
2171 Female, age 85, both hemispheres 638.2
2791 Male, age 74, right hemisphere 634.8
Motor facial nucleus
nTPM: 648.7
2126 Male, age 61, both hemispheres 656.6
2062 Male, age 76, both hemispheres 656.1
2365 Male, age 74, right hemisphere 655.9
2697 Female, age 85, both hemispheres 652.0
2795 Female, age 91, both hemispheres 643.9
2327 Male, age 80, both hemispheres 627.4
Motor trigeminal nucleus
nTPM: 651.1
2335 Male, age 61, both hemispheres 667.5
2321 Female, age 91, both hemispheres 652.9
2309 Male, age 76, both hemispheres 648.9
2560 Male, age 74, both hemispheres 646.2
2079 Male, age 80, both hemispheres 639.9
Nuclei of the trapezoid body
nTPM: 649.8
1983 Male, age 76, both hemispheres 681.7
2166 Male, age 80, both hemispheres 650.1
2159 Male, age 61, both hemispheres 644.0
2368 Female, age 91, both hemispheres 641.3
2735 Female, age 85, both hemispheres 631.8
Paramedian reticular nucleus
nTPM: 655.4
2057 Male, age 80, both hemispheres 665.4
2052 Male, age 76, both hemispheres 661.3
2313 Male, age 61, both hemispheres 651.1
2050 Female, age 85, both hemispheres 643.5
Pontine nuclei
nTPM: 652.4
2319 Female, age 91, both hemispheres 663.9
2115 Male, age 80, left hemisphere 662.2
1968 Male, age 76, left hemisphere 657.5
2454 Male, age 74, left hemisphere 652.0
1863 Male, age 55, unknown 650.9
2787 Female, age 85, both hemispheres 649.6
2109 Female, age 72, unknown 649.0
2727 Male, age 61, right hemisphere 634.5
Pontine raphe nucleus
nTPM: 644.3
2853 Male, age 76, midline 646.4
2122 Female, age 85, midline 642.2
Posteroventral cochlear nucleus
nTPM: 679.7
2135 Female, age 91, both hemispheres 705.6
2341 Male, age 80, both hemispheres 701.9
2371 Male, age 61, both hemispheres 684.5
2070 Male, age 76, both hemispheres 653.7
2752 Female, age 85, both hemispheres 652.7
Principal sensory trigeminal nucleus
nTPM: 643.2
2367 Female, age 91, left hemisphere 652.7
2324 Male, age 76, both hemispheres 650.3
2158 Male, age 61, both hemispheres 646.4
2008 Male, age 80, left hemisphere 623.3
Reticular pontine nucleus, caudal
nTPM: 655.9
2457 Female, age 91, both hemispheres 673.5
2092 Male, age 76, both hemispheres 669.0
2559 Male, age 74, both hemispheres 654.8
2332 Male, age 80, right hemisphere 626.3
Reticular pontine nucleus, oral
nTPM: 658.3
2361 Male, age 74, both hemispheres 668.6
2167 Male, age 76, both hemispheres 668.3
2366 Female, age 91, both hemispheres 667.4
1939 Male, age 80, both hemispheres 651.6
2012 Female, age 85, both hemispheres 635.8
Reticulotegmental nucleus
nTPM: 652.5
2452 Male, age 74, both hemispheres 665.9
2322 Female, age 91, both hemispheres 655.4
2325 Male, age 76, both hemispheres 645.3
2333 Male, age 80, both hemispheres 643.3
Spinal trigeminal nucleus, oral
nTPM: 644.3
2164 Male, age 80, both hemispheres 657.9
1978 Male, age 76, both hemispheres 640.7
2737 Female, age 85, both hemispheres 634.3
Subcoeruleus area
nTPM: 652.5
2451 Male, age 74, both hemispheres 682.0
2369 Female, age 85, left hemisphere 660.3
1958 Male, age 80, both hemispheres 642.0
2089 Male, age 76, left hemisphere 640.5
2323 Female, age 91, left hemisphere 637.7
Superior olive
nTPM: 645.9
2020 Male, age 76, both hemispheres 665.3
2364 Male, age 74, right hemisphere 651.9
2561 Female, age 91, both hemispheres 651.5
2329 Male, age 80, right hemisphere 636.3
1875 Female, age 85, both hemispheres 624.2
Superior vestibular nucleus
nTPM: 671.4
2383 Male, age 74, both hemispheres 674.5
2015 Male, age 80, both hemispheres 673.7
2061 Male, age 76, both hemispheres 666.0
Ventral periolivary nuclei
nTPM: 645.4
2023 Male, age 76, both hemispheres 653.1
2165 Male, age 80, both hemispheres 650.1
2794 Female, age 91, left hemisphere 640.9
2130 Female, age 85, both hemispheres 637.6
Ventrolateral tegmental area, A5 NE cell group
nTPM: 651.0
2359 Male, age 61, both hemispheres 661.1
2161 Male, age 80, both hemispheres 658.9
2456 Female, age 91, both hemispheres 653.8
1959 Male, age 76, both hemispheres 650.6
2840 Female, age 85, both hemispheres 644.9
2449 Male, age 74, both hemispheres 636.8

PONS - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

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Max Scaled Tags Per Million 60.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Locus coeruleus
Scaled Tags Per Million: 60.5
FF:10165-103B3 76 years, female 65.5
FF:10182-103D2 60 years, female 55.5
Pons
Scaled Tags Per Million: 46.7
FF:10033-101E6 18-54 years, mixed 46.7

PONS - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
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Average nTPM 253.2
Pig sample Sample description nTPM
Pons
nTPM: 253.2
Samples: 4

Max nTPM: 315.2
Min nTPM: 181.4
Sample A Female 258.5
Sample B Female 181.4
Sample C Male 315.2
Sample D Male 257.8

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The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.