MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:121.2 nTPM
HPA:121.2 nTPM
GTEx:93.5 nTPM
FANTOM5:96.7 Scaled Tags Per Million
Pig:107.1 nTPM
Mouse:75.5 nTPM
Allen mouse:6.5 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 121.2
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 113.4
2586 Male, age 75, left hemisphere 198.3
2828 Female, age 72, unknown 150.2
2666 Male, age 74, left hemisphere 136.7
1827 Male, age 72, unknown 106.9
1870 Female, age 42, unknown 100.9
2219 Male, age 76, both hemispheres 93.9
1833 Male, age 53, unknown 93.8
1830 Male, age 51, unknown 92.8
2411 Female, age 72, unknown 92.0
2019 Male, age 18, unknown 68.8
Dorsal raphe nucleus
nTPM: 112.8
1828 Male, age 53, unknown 130.8
2047 Male, age 72, unknown 129.0
2016 Female, age 72, unknown 117.0
2298 Female, age 72, unknown 95.8
2750 Male, age 76, both hemispheres 91.6
Inferior colliculus
nTPM: 93.8
2849 Male, age 72, unknown 101.5
1848 Female, age 42, unknown 100.7
1890 Male, age 53, unknown 94.0
2097 Female, age 72, unknown 78.9
Median raphe nucleus
nTPM: 96.7
2220 Male, age 76, midline 96.7
Pedunculopontine tegmental nucleus
nTPM: 85.8
2334 Male, age 80, both hemispheres 95.3
1921 Female, age 85, both hemispheres 89.4
2338 Male, age 61, both hemispheres 72.8
Periaquaductal grey, anterior
nTPM: 106.9
1795 Male, age 51, unknown 117.8
1947 Male, age 18, unknown 115.4
2502 Female, age 75, unknown 87.5
Periaquaductal grey, dorsal
nTPM: 99.2
1840 Male, age 53, unknown 107.4
1831 Male, age 72, unknown 101.1
2850 Male, age 76, both hemispheres 96.4
2464 Female, age 72, unknown 91.9
Periaquaductal grey, lateral
nTPM: 96.4
2053 Male, age 18, unknown 121.4
2140 Male, age 76, both hemispheres 92.5
2272 Male, age 74, both hemispheres 75.4
Pretectal area
nTPM: 96.5
2825 Male, age 18, unknown 123.8
2407 Male, age 75, both hemispheres 106.8
2667 Female, age 75, unknown 101.4
1815 Male, age 53, unknown 100.8
1944 Female, age 72, unknown 100.4
1817 Female, age 42, unknown 99.2
1816 Male, age 51, unknown 93.5
2224 Female, age 72, unknown 90.4
2007 Male, age 72, unknown 86.5
2316 Male, age 76, right hemisphere 85.7
2273 Male, age 74, both hemispheres 73.5
Red nucleus
nTPM: 107.6
2584 Male, age 75, left hemisphere 137.2
2503 Female, age 72, unknown 122.6
2588 Male, age 74, left hemisphere 121.5
2725 Female, age 75, unknown 113.7
2769 Male, age 72, unknown 112.0
2227 Male, age 72, unknown 108.6
1954 Female, age 42, unknown 108.1
2823 Male, age 76, right hemisphere 100.5
1821 Female, age 72, unknown 100.1
1865 Male, age 51, unknown 96.8
1904 Male, age 53, unknown 96.5
2785 Male, age 18, unknown 73.2
Substantia nigra
nTPM: 121.2
2699 Male, age 18, unknown 150.3
2583 Male, age 75, right hemisphere 146.0
2665 Male, age 74, both hemispheres 132.9
1916 Female, age 42, unknown 130.8
1851 Male, age 51, unknown 118.3
2590 Female, age 75, unknown 114.9
2409 Female, age 72, unknown 112.7
2241 Male, age 72, unknown 110.9
1889 Female, age 72, unknown 100.3
1941 Male, age 53, unknown 95.0
Superior colliculus
nTPM: 101.2
2664 Male, age 75, both hemispheres 152.0
1796 Male, age 53, unknown 114.4
2668 Female, age 75, unknown 109.8
2261 Male, age 18, unknown 103.7
1839 Male, age 51, unknown 102.9
2087 Female, age 72, unknown 96.3
2587 Male, age 74, left hemisphere 89.1
1995 Male, age 72, unknown 86.0
1913 Female, age 42, unknown 83.7
1895 Male, age 76, right hemisphere 74.3
Ventral tegmental area
nTPM: 108.6
1942 Male, age 51, unknown 123.3
2410 Female, age 72, unknown 116.1
1915 Female, age 42, unknown 110.1
2021 Male, age 53, unknown 110.0
2218 Male, age 76, both hemispheres 100.0
2223 Female, age 72, unknown 92.3

MIDBRAIN - GTEx RNA-seqi
Average nTPM 93.5
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 93.5
Samples: 139

Max nTPM: 239.3
Min nTPM: 19.6
Std nTPM: 40.8
Median nTPM: 86.1
GTEX-13SLW-0011-R2b-SM-5O9C6 70-79 years, male 239.3
GTEX-13X6K-0011-R2b-SM-5P9K3 60-69 years, female 213.0
GTEX-13CF2-0011-R2a-SM-5L3DC 60-69 years, male 191.8
GTEX-1LVAO-0011-R2a-SM-EYYX1 60-69 years, male 190.1
GTEX-1H3VE-0011-R2a-SM-CE6SA 40-49 years, male 160.1
GTEX-1C6VR-0011-R2a-SM-7RHGZ 60-69 years, male 160.0
GTEX-1F6I4-0011-R2a-SM-CL536 60-69 years, male 159.0
GTEX-1GZ2Q-0011-R2b-SM-9OSWO 40-49 years, male 158.9
GTEX-14BIN-0011-R2a-SM-5S2RJ 50-59 years, female 154.7
GTEX-1GN2E-0011-R2a-SM-9WG7D 60-69 years, male 152.5
GTEX-11GSP-0011-R2b-SM-9QEGE 60-69 years, female 152.0
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 96.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 96.7
FF:10158-103A5 76 years, female 96.7

MIDBRAIN - Pig RNA-seqi
Average nTPM 107.1
Pig sample Sample description nTPM
Midbrain
nTPM: 101.6
Samples: 4

Max nTPM: 168.3
Min nTPM: 67.8
Sample A Female 67.8
Sample B Female 83.8
Sample C Male 168.3
Sample D Male 86.6
Periaqueductal gray
nTPM: 76.5
Samples: 3

Max nTPM: 86.7
Min nTPM: 60.3
Sample B Female 86.7
Sample C Male 82.4
Sample D Male 60.3
Substantia nigra
nTPM: 107.1
Samples: 4

Max nTPM: 128.8
Min nTPM: 77.9
Sample A Female 110.0
Sample B Female 77.9
Sample C Male 128.8
Sample D Male 111.6
Superior colliculi
nTPM: 96.3
Samples: 4

Max nTPM: 135.8
Min nTPM: 49.2
Sample A Female 94.2
Sample B Female 49.2
Sample C Male 135.8
Sample D Male 106.0

MIDBRAIN - Mouse RNA-seqi
Average nTPM 75.5
Mouse sample Sample description nTPM
Midbrain
nTPM: 75.5
Samples: 4

Max nTPM: 80.3
Min nTPM: 71.4
Sample A Male 80.3
Sample B Male 75.8
Sample C Female 71.4
Sample D Female 74.4

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 6.5
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 6.5
71358662 Antisense, RP_050725_03_F12, Mouse strain C57BL/6J (56 days, male) 6.8
68845287 Antisense, RP_050224_01_E03, Mouse strain C57BL/6J (56 days, male) 6.3

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.