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BRAIN AMYGDALA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA MIDBRAIN
OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
PRIMARY MOUSE DATA
ANTIBODIES
AND
VALIDATION
Brain proteome
Amygdala
AMYGDALA - Expression summary
Mouse brain, Intensity
Amygdalai

Protein expression in mouse brain using immunofluorescence is reported as mean fluorescence intensity .

Read more
138.028
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:102.0 nTPM
HPA:102.0 nTPM
GTEx:86.5 nTPM
FANTOM5:209.8 Scaled Tags Per Million
Pig:108.7 nTPM
Mouse:196.8 nTPM
Allen mouse:13.9 Expression energy

AMYGDALA - Mouse brain profilei

Protein expression in mouse brain using immunofluorescence is reported as fluorescence intensity .

Read more
, antibody CAB025746
Amygdala mean intensity 138.028
intensityi

Protein expression in mouse brain using immunofluorescence is reported as mean fluorescence intensity .

Read more
FRONT BACK
Nucleus of the lateral olfactory tract -
Basal medial amygdaloid nucleus 135.892
Basal lateral amygdala* -
Basal lateral amygdaloid nucleus 112.187
Cortical amygdala 138.028
Central amygdala 92.687
Medial amygdaloid nucleus 119.886

AMYGDALA - HPA Brain RNA-seq
Max nTPM 102.0
Sample id Sample description nTPM
Amygdala
nTPM: 69.1
2514 Male, age 75, right hemisphere 83.5
2517 Female, age 94, left hemisphere 74.9
1987 Female, age 91, left hemisphere 73.6
2814 Male, age 76, right hemisphere 66.1
2695 Female, age 67, right hemisphere 47.7
Basal amygdala
nTPM: 100.6
2243 Female, age 91, right hemisphere 150.6
2685 Female, age 94, left hemisphere 121.4
2609 Male, age 75, right hemisphere 102.3
2110 Male, age 80, left hemisphere 101.6
1955 Male, age 76, both hemispheres 77.1
2827 Female, age 67, right hemisphere 50.9
Central amygdala
nTPM: 81.9
2515 Male, age 75, right hemisphere 113.8
2826 Female, age 94, left hemisphere 83.5
2239 Male, age 80, left hemisphere 81.4
2701 Female, age 91, right hemisphere 66.4
1905 Male, age 76, both hemispheres 64.6
Corticomedial amygdala
nTPM: 102.0
2242 Female, age 91, right hemisphere 119.1
2829 Male, age 80, left hemisphere 118.8
2428 Male, age 75, right hemisphere 105.7
2429 Female, age 94, left hemisphere 94.8
2240 Male, age 76, both hemispheres 90.6
2535 Female, age 67, right hemisphere 83.2
Lateral amygdala
nTPM: 69.2
2534 Female, age 94, left hemisphere 113.4
1883 Male, age 76, both hemispheres 79.3
2255 Female, age 91, right hemisphere 74.4
2256 Male, age 80, left hemisphere 66.9
2516 Male, age 75, right hemisphere 55.1
2830 Female, age 67, right hemisphere 25.9
Stria terminalis, bed nucleus
nTPM: 97.4
1974 Female, age 91, both hemispheres 118.1
2486 Female, age 94, both hemispheres 106.6
2201 Male, age 74, unknown 67.6

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 86.5
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 86.5
Samples: 152

Max nTPM: 260.6
Min nTPM: 16.2
Std nTPM: 38.2
Median nTPM: 81.7
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 260.6
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 251.3
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 204.3
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 180.1
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 178.1
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 176.9
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 165.7
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 155.4
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 152.2
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 147.4
GTEX-R55E-0011-R4A-SM-2TC5H 20-29 years, male 146.8
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 145.4
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 139.6
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 130.7
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 129.4
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 128.9
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 128.8
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 126.8
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 123.5
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 123.1
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 122.5
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 121.9
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 118.9
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 115.8
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 114.6
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 114.5
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 114.4
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 110.9
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 110.9
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 110.6
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 110.1
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 109.5
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 109.2
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 105.5
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 104.3
GTEX-NL3H-0011-R4a-SM-2I3GK 60-69 years, male 104.3
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 102.8
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 102.7
GTEX-P44G-0011-R4A-SM-2I3FB 30-39 years, male 102.7
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 101.7
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 100.0
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 99.0
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 98.9
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 96.8
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 96.2
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 95.9
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 94.8
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 93.1
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 93.0
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 91.8
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 91.7
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 91.4
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 91.1
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 90.6
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 90.3
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 89.1
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 88.1
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 86.1
GTEX-T5JC-0011-R4A-SM-32PLT 20-29 years, male 86.0
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 86.0
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 85.8
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 85.8
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 85.7
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 85.5
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 85.4
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 85.0
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 84.5
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 83.7
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 83.6
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 83.2
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 83.2
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 82.7
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 82.5
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 82.1
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 81.9
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 81.7
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 81.7
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 81.6
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 81.6
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 81.3
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 80.6
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 79.8
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 79.4
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 77.8
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 77.7
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 77.4
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 77.4
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 76.9
GTEX-QDT8-0011-R4A-SM-32PKM 30-39 years, female 75.9
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 75.4
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 75.3
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 75.0
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 74.9
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 73.9
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 73.7
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 71.6
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 71.1
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 69.9
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 69.6
GTEX-18464-0011-R4a-SM-7LG6T 50-59 years, male 68.6
GTEX-UTHO-0011-R4A-SM-3GIJP 60-69 years, male 68.4
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 67.9
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 67.6
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 66.0
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 65.5
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 65.4
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 65.1
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 65.1
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 64.9
GTEX-P44H-0011-R4A-SM-2XCEW 40-49 years, male 64.7
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 64.2
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 63.8
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 62.6
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 62.0
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 60.9
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 60.8
GTEX-T6MN-0011-R4A-SM-32QPG 50-59 years, male 60.6
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 58.8
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 57.8
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 57.8
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 57.4
GTEX-N7MS-0011-R4a-SM-2HMKW 60-69 years, male 56.7
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 56.1
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 53.9
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 53.5
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 53.2
GTEX-1JJEA-0011-R4a-SM-EXUTC 60-69 years, male 53.2
GTEX-1H2FU-0011-R4a-SM-CL551 60-69 years, female 53.0
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 52.5
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 52.1
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 51.8
GTEX-QMR6-0011-R4A-SM-32PKU 50-59 years, male 51.6
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 51.6
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 51.3
GTEX-1JN6P-0011-R4a-SM-EZ6MS 60-69 years, male 50.9
GTEX-ZE9C-0011-R4a-SM-4WKH6 60-69 years, male 50.6
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 50.5
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 49.4
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 48.3
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 48.2
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 47.8
GTEX-Y8DK-0011-R4A-SM-EXUR1 60-69 years, male 43.5
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 43.3
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 42.5
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 42.3
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 39.1
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 37.4
GTEX-15DDE-0011-R4b-SM-7KULI 50-59 years, female 35.9
GTEX-1CB4J-0011-R4b-SM-9WG5P 60-69 years, male 21.8
GTEX-183WM-0011-R4a-SM-7LG6S 70-79 years, female 20.4
GTEX-145MI-0011-R4b-SM-5PNZH 60-69 years, female 16.8
GTEX-X4EP-0011-R4B-SM-3P627 60-69 years, female 16.2
Show allShow less

AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 209.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 209.8
FF:10151-102I7 76 years, female 209.8

AMYGDALA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 108.7
Pig sample Sample description nTPM
Amygdala
nTPM: 108.7
Samples: 4

Max nTPM: 191.3
Min nTPM: 66.8
Sample A Female 191.3
Sample B Female 66.8
Sample C Male 84.0
Sample D Male 92.8

AMYGDALA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 196.8
Mouse sample Sample description nTPM
Amygdala
nTPM: 196.9
Samples: 4

Max nTPM: 224.3
Min nTPM: 183.4
Sample A Male 224.3
Sample B Male 186.8
Sample C Female 183.4
Sample D Female 192.9

AMYGDALA - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Read more
Max Expression energy 13.9
Allen experiment id Experiment description Expression energy
Cortical subplate
Expression energy: 13.9
69169911 Antisense, RP_050321_04_D11, Mouse strain C57BL/6J (56 days, male) 13.9

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